Wall clock time and date at job start Mon Mar 30 2020 01:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35742 * 116.99788 * 2 1 4 4 C 1.39278 * 120.84683 * 0.02562 * 3 2 1 5 5 C 1.37952 * 119.08994 * 180.02562 * 4 3 2 6 6 N 1.31977 * 120.82756 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.85817 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.58440 * 180.02562 * 7 6 5 9 9 S 1.81404 * 109.47098 * 90.00156 * 8 7 6 10 10 C 1.81397 * 103.00143 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47527 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47431 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47166 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00391 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99888 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00302 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47077 * 89.99764 * 17 15 13 19 19 H 1.48505 * 109.46982 * 209.99728 * 17 15 13 20 20 H 1.48499 * 109.47080 * 329.99893 * 17 15 13 21 21 C 1.37986 * 120.82785 * 0.27722 * 7 6 5 22 22 H 1.09001 * 109.46863 * 300.00265 * 1 2 3 23 23 H 1.08997 * 109.46830 * 60.00449 * 1 2 3 24 24 H 1.08998 * 109.46763 * 179.97438 * 1 2 3 25 25 H 1.08005 * 120.45818 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.58328 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47060 * 210.00105 * 8 7 6 28 28 H 1.09001 * 109.47380 * 330.00193 * 8 7 6 29 29 H 1.09007 * 109.46846 * 299.99983 * 10 9 8 30 30 H 1.09007 * 109.47453 * 59.99610 * 10 9 8 31 31 H 1.08996 * 109.46730 * 300.00157 * 11 10 9 32 32 H 1.08998 * 109.46901 * 59.99649 * 11 10 9 33 33 H 1.08997 * 109.47150 * 300.00312 * 12 11 10 34 34 H 1.08998 * 109.47082 * 60.00106 * 12 11 10 35 35 H 0.97001 * 120.00368 * 179.97438 * 16 15 13 36 36 H 1.07992 * 120.46215 * 179.71135 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0000 6 7 3.2865 3.6458 -0.0005 7 6 4.0231 2.5510 -0.0001 8 6 5.5257 2.6652 -0.0001 9 16 6.1287 2.7118 1.7102 10 6 7.9260 2.8475 1.5057 11 6 8.5934 2.8994 2.8815 12 6 10.1093 3.0132 2.7090 13 6 10.7665 3.0649 4.0641 14 1 10.1634 3.0206 4.9589 15 6 12.1379 3.1689 4.1616 16 7 12.8725 3.2223 3.0721 17 14 12.9527 3.2323 5.8414 18 1 13.2743 1.8530 6.2880 19 1 14.2031 4.0288 5.7554 20 1 12.0285 3.8653 6.8163 21 6 3.4347 1.3029 -0.0047 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2244 2.3566 0.0014 26 1 1.4007 4.5173 0.0008 27 1 5.9555 1.8051 -0.5136 28 1 5.8206 3.5800 -0.5143 29 1 8.2953 1.9825 0.9547 30 1 8.1612 3.7575 0.9536 31 1 8.2240 3.7645 3.4320 32 1 8.3582 1.9896 3.4339 33 1 10.4783 2.1478 2.1586 34 1 10.3448 3.9227 2.1565 35 1 13.8373 3.2958 3.1407 36 1 4.0432 0.4107 -0.0090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116611085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:43 Heat of formation + Delta-G solvation = -42.270974 kcal Electronic energy + Delta-G solvation = -16574.849299 eV Core-core repulsion = 13763.232388 eV Total energy + Delta-G solvation = -2811.616910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65180 -39.34693 -36.35844 -34.04384 -33.90201 -32.55941 -29.60270 -29.21748 -27.84314 -25.36004 -24.53364 -22.93783 -21.98343 -19.10080 -18.53527 -18.10013 -17.15636 -16.82726 -16.72549 -16.54120 -16.25571 -15.90682 -15.51145 -15.01804 -14.54632 -14.45606 -14.21381 -14.16238 -13.56447 -13.39811 -13.09056 -12.76316 -12.73269 -12.51308 -12.37382 -12.19668 -11.65006 -11.48515 -11.22860 -10.94338 -10.57737 -10.55899 -10.05021 -9.91779 -8.67662 -8.20835 -6.31752 -0.23667 0.28107 0.86738 1.40665 1.41920 1.53301 1.61110 2.12044 2.41428 2.81675 3.12459 3.15283 3.63429 3.79740 4.03187 4.05413 4.07690 4.11657 4.29084 4.34103 4.36744 4.49054 4.60121 4.69946 4.75615 4.81843 4.82908 4.97846 5.01913 5.13915 5.46275 5.49312 5.68958 5.82620 6.19040 6.22864 6.83741 6.98552 7.37262 8.90920 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.046347 B = 0.002673 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.991265 B =10471.716457 C =10659.051405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.160 3.840 4 C -0.252 4.252 5 C 0.131 3.869 6 N -0.524 5.524 7 C 0.165 3.835 8 C -0.033 4.033 9 S -0.276 6.276 10 C -0.067 4.067 11 C -0.081 4.081 12 C 0.031 3.969 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.200 4.200 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.173 0.827 26 H 0.189 0.811 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.055 0.945 33 H -0.001 1.001 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.464 -4.348 -9.352 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.107 3.893 4 C -0.273 4.273 5 C -0.025 4.025 6 N -0.238 5.238 7 C 0.028 3.972 8 C -0.181 4.181 9 S -0.048 6.048 10 C -0.215 4.215 11 C -0.120 4.120 12 C -0.008 4.008 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.223 4.223 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.139 0.861 25 H 0.191 0.809 26 H 0.206 0.794 27 H 0.134 0.866 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.390 -3.806 -8.486 28.926 hybrid contribution 0.922 -0.579 -0.429 1.170 sum -26.469 -4.385 -8.916 28.272 Atomic orbital electron populations 1.23487 0.75450 1.06136 1.02895 1.86070 1.24309 1.25921 1.87592 1.19414 0.92143 0.85654 0.92124 1.22551 1.03134 0.92160 1.09460 1.23106 0.89129 0.98813 0.91501 1.67489 1.08543 1.32083 1.15658 1.20163 0.94290 0.88293 0.94407 1.22177 0.92459 1.07442 0.95994 1.87085 1.07646 1.97690 1.12361 1.23403 0.91185 1.05078 1.01879 1.21164 0.95721 1.01180 0.93891 1.18977 0.90535 0.95363 0.95892 1.21663 0.92500 1.50447 0.93726 0.92386 1.25962 0.98230 0.94667 1.00862 1.70081 1.05942 1.51280 1.29863 0.85445 0.77829 0.78457 0.79318 1.19664 1.20555 1.18943 1.21358 0.93185 0.99424 1.08323 0.91201 0.90817 0.86058 0.80927 0.79397 0.86575 0.87867 0.89556 0.90017 0.92843 0.92588 0.98289 0.98456 0.92670 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.22 16 2 O -0.33 -5.66 10.51 -90.66 -0.95 -6.61 16 3 C 0.16 3.14 6.74 22.76 0.15 3.29 16 4 C -0.25 -3.82 9.11 22.45 0.20 -3.62 16 5 C 0.13 2.37 11.17 84.60 0.95 3.32 16 6 N -0.52 -13.23 10.27 -184.12 -1.89 -15.12 16 7 C 0.17 4.17 6.04 42.48 0.26 4.42 16 8 C -0.03 -0.83 6.23 71.24 0.44 -0.39 16 9 S -0.28 -8.92 21.72 -56.49 -1.23 -10.15 16 10 C -0.07 -2.37 5.94 71.98 0.43 -1.94 16 11 C -0.08 -3.48 5.16 30.59 0.16 -3.32 16 12 C 0.03 1.67 4.97 29.85 0.15 1.81 16 13 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 15 C 0.00 0.04 5.46 84.66 0.46 0.50 16 16 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 17 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 C -0.20 -4.58 9.70 22.45 0.22 -4.36 16 22 H 0.07 0.38 7.71 -2.39 -0.02 0.37 16 23 H 0.07 0.33 7.71 -2.39 -0.02 0.31 16 24 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.17 1.31 6.47 -2.91 -0.02 1.29 16 26 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 27 H 0.12 2.45 8.07 -2.39 -0.02 2.43 16 28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 33 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -70.65 323.38 4.06 -66.59 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.05 Total: 5.61 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 4.77 Total: -30.52 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.61 Total: -71.85 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.95 Total: -6.61 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.23 Total: -10.15 kcal Total: -70.65 4.06 -66.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116611085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.321 kcal (2) G-P(sol) polarization free energy of solvation -70.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds