Wall clock time and date at job start Mon Mar 30 2020 01:00:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35742 * 116.99788 * 2 1
4 4 C 1.39278 * 120.84683 * 0.02562 * 3 2 1
5 5 C 1.37952 * 119.08994 * 180.02562 * 4 3 2
6 6 N 1.31977 * 120.82756 * 359.97438 * 5 4 3
7 7 C 1.31947 * 121.85817 * 359.97438 * 6 5 4
8 8 C 1.50701 * 119.58440 * 180.02562 * 7 6 5
9 9 S 1.81404 * 109.47098 * 90.00156 * 8 7 6
10 10 C 1.81397 * 103.00143 * 179.97438 * 9 8 7
11 11 C 1.52997 * 109.47527 * 179.97438 * 10 9 8
12 12 C 1.52993 * 109.47431 * 179.97438 * 11 10 9
13 13 C 1.50697 * 109.47166 * 179.97438 * 12 11 10
14 14 H 1.07997 * 120.00391 * 0.02562 * 13 12 11
15 15 C 1.37879 * 119.99888 * 180.02562 * 13 12 11
16 16 N 1.31510 * 120.00302 * 359.97438 * 15 13 12
17 17 Si 1.86805 * 119.99788 * 180.02562 * 15 13 12
18 18 H 1.48501 * 109.47077 * 89.99764 * 17 15 13
19 19 H 1.48505 * 109.46982 * 209.99728 * 17 15 13
20 20 H 1.48499 * 109.47080 * 329.99893 * 17 15 13
21 21 C 1.37986 * 120.82785 * 0.27722 * 7 6 5
22 22 H 1.09001 * 109.46863 * 300.00265 * 1 2 3
23 23 H 1.08997 * 109.46830 * 60.00449 * 1 2 3
24 24 H 1.08998 * 109.46763 * 179.97438 * 1 2 3
25 25 H 1.08005 * 120.45818 * 0.02562 * 4 3 2
26 26 H 1.08004 * 119.58328 * 180.02562 * 5 4 3
27 27 H 1.09002 * 109.47060 * 210.00105 * 8 7 6
28 28 H 1.09001 * 109.47380 * 330.00193 * 8 7 6
29 29 H 1.09007 * 109.46846 * 299.99983 * 10 9 8
30 30 H 1.09007 * 109.47453 * 59.99610 * 10 9 8
31 31 H 1.08996 * 109.46730 * 300.00157 * 11 10 9
32 32 H 1.08998 * 109.46901 * 59.99649 * 11 10 9
33 33 H 1.08997 * 109.47150 * 300.00312 * 12 11 10
34 34 H 1.08998 * 109.47082 * 60.00106 * 12 11 10
35 35 H 0.97001 * 120.00368 * 179.97438 * 16 15 13
36 36 H 1.07992 * 120.46215 * 179.71135 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0453 1.2095 0.0000
4 6 1.3040 2.3886 0.0005
5 6 1.9676 3.5980 0.0000
6 7 3.2865 3.6458 -0.0005
7 6 4.0231 2.5510 -0.0001
8 6 5.5257 2.6652 -0.0001
9 16 6.1287 2.7118 1.7102
10 6 7.9260 2.8475 1.5057
11 6 8.5934 2.8994 2.8815
12 6 10.1093 3.0132 2.7090
13 6 10.7665 3.0649 4.0641
14 1 10.1634 3.0206 4.9589
15 6 12.1379 3.1689 4.1616
16 7 12.8725 3.2223 3.0721
17 14 12.9527 3.2323 5.8414
18 1 13.2743 1.8530 6.2880
19 1 14.2031 4.0288 5.7554
20 1 12.0285 3.8653 6.8163
21 6 3.4347 1.3029 -0.0047
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 0.2244 2.3566 0.0014
26 1 1.4007 4.5173 0.0008
27 1 5.9555 1.8051 -0.5136
28 1 5.8206 3.5800 -0.5143
29 1 8.2953 1.9825 0.9547
30 1 8.1612 3.7575 0.9536
31 1 8.2240 3.7645 3.4320
32 1 8.3582 1.9896 3.4339
33 1 10.4783 2.1478 2.1586
34 1 10.3448 3.9227 2.1565
35 1 13.8373 3.2958 3.1407
36 1 4.0432 0.4107 -0.0090
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001116611085.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:00:43
Heat of formation + Delta-G solvation = -42.270974 kcal
Electronic energy + Delta-G solvation = -16574.849299 eV
Core-core repulsion = 13763.232388 eV
Total energy + Delta-G solvation = -2811.616910 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.65180 -39.34693 -36.35844 -34.04384 -33.90201 -32.55941 -29.60270 -29.21748
-27.84314 -25.36004 -24.53364 -22.93783 -21.98343 -19.10080 -18.53527 -18.10013
-17.15636 -16.82726 -16.72549 -16.54120 -16.25571 -15.90682 -15.51145 -15.01804
-14.54632 -14.45606 -14.21381 -14.16238 -13.56447 -13.39811 -13.09056 -12.76316
-12.73269 -12.51308 -12.37382 -12.19668 -11.65006 -11.48515 -11.22860 -10.94338
-10.57737 -10.55899 -10.05021 -9.91779 -8.67662 -8.20835 -6.31752 -0.23667
0.28107 0.86738 1.40665 1.41920 1.53301 1.61110 2.12044 2.41428
2.81675 3.12459 3.15283 3.63429 3.79740 4.03187 4.05413 4.07690
4.11657 4.29084 4.34103 4.36744 4.49054 4.60121 4.69946 4.75615
4.81843 4.82908 4.97846 5.01913 5.13915 5.46275 5.49312 5.68958
5.82620 6.19040 6.22864 6.83741 6.98552 7.37262 8.90920
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.046347 B = 0.002673 C = 0.002626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 603.991265 B =10471.716457 C =10659.051405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 O -0.327 6.327
3 C 0.160 3.840
4 C -0.252 4.252
5 C 0.131 3.869
6 N -0.524 5.524
7 C 0.165 3.835
8 C -0.033 4.033
9 S -0.276 6.276
10 C -0.067 4.067
11 C -0.081 4.081
12 C 0.031 3.969
13 C -0.545 4.545
14 H 0.058 0.942
15 C 0.001 3.999
16 N -0.932 5.932
17 Si 0.965 3.035
18 H -0.271 1.271
19 H -0.280 1.280
20 H -0.265 1.265
21 C -0.200 4.200
22 H 0.069 0.931
23 H 0.073 0.927
24 H 0.121 0.879
25 H 0.173 0.827
26 H 0.189 0.811
27 H 0.116 0.884
28 H 0.103 0.897
29 H 0.086 0.914
30 H 0.081 0.919
31 H 0.053 0.947
32 H 0.055 0.945
33 H -0.001 1.001
34 H -0.003 1.003
35 H 0.265 0.735
36 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.464 -4.348 -9.352 29.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.239 6.239
3 C 0.107 3.893
4 C -0.273 4.273
5 C -0.025 4.025
6 N -0.238 5.238
7 C 0.028 3.972
8 C -0.181 4.181
9 S -0.048 6.048
10 C -0.215 4.215
11 C -0.120 4.120
12 C -0.008 4.008
13 C -0.583 4.583
14 H 0.076 0.924
15 C -0.197 4.197
16 N -0.572 5.572
17 Si 0.790 3.210
18 H -0.197 1.197
19 H -0.206 1.206
20 H -0.189 1.189
21 C -0.223 4.223
22 H 0.088 0.912
23 H 0.092 0.908
24 H 0.139 0.861
25 H 0.191 0.809
26 H 0.206 0.794
27 H 0.134 0.866
28 H 0.121 0.879
29 H 0.104 0.896
30 H 0.100 0.900
31 H 0.072 0.928
32 H 0.074 0.926
33 H 0.017 0.983
34 H 0.015 0.985
35 H 0.073 0.927
36 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -27.390 -3.806 -8.486 28.926
hybrid contribution 0.922 -0.579 -0.429 1.170
sum -26.469 -4.385 -8.916 28.272
Atomic orbital electron populations
1.23487 0.75450 1.06136 1.02895 1.86070 1.24309 1.25921 1.87592
1.19414 0.92143 0.85654 0.92124 1.22551 1.03134 0.92160 1.09460
1.23106 0.89129 0.98813 0.91501 1.67489 1.08543 1.32083 1.15658
1.20163 0.94290 0.88293 0.94407 1.22177 0.92459 1.07442 0.95994
1.87085 1.07646 1.97690 1.12361 1.23403 0.91185 1.05078 1.01879
1.21164 0.95721 1.01180 0.93891 1.18977 0.90535 0.95363 0.95892
1.21663 0.92500 1.50447 0.93726 0.92386 1.25962 0.98230 0.94667
1.00862 1.70081 1.05942 1.51280 1.29863 0.85445 0.77829 0.78457
0.79318 1.19664 1.20555 1.18943 1.21358 0.93185 0.99424 1.08323
0.91201 0.90817 0.86058 0.80927 0.79397 0.86575 0.87867 0.89556
0.90017 0.92843 0.92588 0.98289 0.98456 0.92670 0.83532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.10 9.84 113.37 1.12 1.22 16
2 O -0.33 -5.66 10.51 -90.66 -0.95 -6.61 16
3 C 0.16 3.14 6.74 22.76 0.15 3.29 16
4 C -0.25 -3.82 9.11 22.45 0.20 -3.62 16
5 C 0.13 2.37 11.17 84.60 0.95 3.32 16
6 N -0.52 -13.23 10.27 -184.12 -1.89 -15.12 16
7 C 0.17 4.17 6.04 42.48 0.26 4.42 16
8 C -0.03 -0.83 6.23 71.24 0.44 -0.39 16
9 S -0.28 -8.92 21.72 -56.49 -1.23 -10.15 16
10 C -0.07 -2.37 5.94 71.98 0.43 -1.94 16
11 C -0.08 -3.48 5.16 30.59 0.16 -3.32 16
12 C 0.03 1.67 4.97 29.85 0.15 1.81 16
13 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16
14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16
15 C 0.00 0.04 5.46 84.66 0.46 0.50 16
16 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16
17 Si 0.97 44.90 29.54 68.60 2.03 46.93 16
18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16
19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16
21 C -0.20 -4.58 9.70 22.45 0.22 -4.36 16
22 H 0.07 0.38 7.71 -2.39 -0.02 0.37 16
23 H 0.07 0.33 7.71 -2.39 -0.02 0.31 16
24 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16
25 H 0.17 1.31 6.47 -2.91 -0.02 1.29 16
26 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16
27 H 0.12 2.45 8.07 -2.39 -0.02 2.43 16
28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16
29 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16
30 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16
31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16
32 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16
33 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16
34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16
35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16
36 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16
Total: -1.00 -70.65 323.38 4.06 -66.59
By element:
Atomic # 1 Polarization: 4.56 SS G_CDS: 1.05 Total: 5.61 kcal
Atomic # 6 Polarization: -35.29 SS G_CDS: 4.77 Total: -30.52 kcal
Atomic # 7 Polarization: -70.24 SS G_CDS: -1.61 Total: -71.85 kcal
Atomic # 8 Polarization: -5.66 SS G_CDS: -0.95 Total: -6.61 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal
Atomic # 16 Polarization: -8.92 SS G_CDS: -1.23 Total: -10.15 kcal
Total: -70.65 4.06 -66.59 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001116611085.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.321 kcal
(2) G-P(sol) polarization free energy of solvation -70.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.271 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds