Wall clock time and date at job start Mon Mar 30 2020 00:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46902 * 2 1 4 4 N 1.28716 * 126.03608 * 274.86037 * 3 2 1 5 5 N 1.28514 * 110.63470 * 180.02562 * 4 3 2 6 6 C 1.33321 * 109.44204 * 359.71993 * 5 4 3 7 7 C 1.37009 * 106.37086 * 0.43736 * 6 5 4 8 8 C 1.47229 * 127.19133 * 179.84901 * 7 6 5 9 9 O 1.21619 * 120.00098 * 185.00476 * 8 7 6 10 10 N 1.34779 * 119.99860 * 4.99463 * 8 7 6 11 11 C 1.46502 * 120.00223 * 174.84629 * 10 8 7 12 12 C 1.50698 * 109.47456 * 180.28014 * 11 10 8 13 13 O 1.21295 * 119.99929 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99865 * 180.02562 * 12 11 10 15 15 C 1.37098 * 119.99535 * 179.97438 * 14 12 11 16 16 H 1.07991 * 120.00591 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99782 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47233 * 59.99926 * 19 17 15 21 21 H 1.48507 * 109.47302 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47153 * 300.00078 * 19 17 15 23 23 H 1.09005 * 109.47371 * 59.99817 * 1 2 3 24 24 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47483 * 300.00077 * 1 2 3 26 26 H 1.09006 * 109.46835 * 240.00237 * 2 1 3 27 27 H 1.08993 * 109.47017 * 120.00408 * 2 1 3 28 28 H 1.08001 * 126.81780 * 180.27891 * 6 5 4 29 29 H 0.97001 * 119.99962 * 355.13061 * 10 8 7 30 30 H 1.09007 * 109.46771 * 300.28449 * 11 10 8 31 31 H 1.09002 * 109.46572 * 60.27921 * 11 10 8 32 32 H 0.97003 * 119.99950 * 359.97438 * 14 12 11 33 33 H 0.97010 * 120.00139 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1875 2.1245 -1.0371 5 7 2.6282 3.2829 -0.6971 6 6 2.7604 3.3358 0.6285 7 6 2.3760 2.1098 1.1042 8 6 2.3471 1.6692 2.5087 9 8 2.0677 0.5168 2.7789 10 7 2.6303 2.5430 3.4950 11 6 2.4921 2.1367 4.8957 12 6 2.8602 3.2907 5.7923 13 8 3.2039 4.3487 5.3088 14 7 2.8077 3.1471 7.1313 15 6 3.1432 4.1968 7.9469 16 1 3.4491 5.1388 7.5165 17 6 3.0885 4.0490 9.3274 18 7 2.7158 2.9029 9.8513 19 14 3.5449 5.4794 10.4387 20 1 2.6426 6.6266 10.1648 21 1 3.4053 5.0672 11.8587 22 1 4.9502 5.8813 10.1764 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.1047 4.1772 1.2115 29 1 2.9218 3.4423 3.2774 30 1 1.4605 1.8416 5.0883 31 1 3.1544 1.2947 5.0968 32 1 2.5325 2.3011 7.5180 33 1 2.6779 2.7995 10.8151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117887173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:25 Heat of formation + Delta-G solvation = -2.353476 kcal Electronic energy + Delta-G solvation = -19533.594102 eV Core-core repulsion = 16209.707681 eV Total energy + Delta-G solvation = -3323.886421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.43234 -40.97501 -39.84473 -36.69968 -36.17197 -35.36138 -33.38493 -32.70085 -31.82169 -29.37343 -26.69940 -25.61313 -24.67241 -23.04264 -21.62397 -21.29802 -20.08947 -19.33781 -18.14869 -17.61405 -17.26173 -17.03496 -16.66079 -16.41140 -15.95850 -15.70588 -15.40912 -15.19398 -14.93363 -14.02350 -13.93612 -13.63151 -13.52387 -13.23935 -13.20633 -12.88792 -12.69826 -12.44698 -12.12802 -12.01720 -11.54125 -11.40635 -11.29102 -10.71170 -10.55070 -10.29065 -10.07035 -8.49493 -5.99115 -0.22300 0.96874 1.15028 1.39736 1.45218 1.55079 1.86297 1.90443 1.95251 2.31346 3.09612 3.18338 3.21543 3.37332 3.65070 3.89067 3.91376 4.19958 4.25628 4.32139 4.42647 4.44327 4.63711 4.80176 4.92591 5.05628 5.11916 5.33925 5.40562 5.93152 6.23695 6.50009 6.82697 7.05830 7.19363 7.46154 7.96477 8.66909 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041624 B = 0.003544 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.521781 B = 7897.957232 C = 8443.440789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 N -0.246 5.246 4 N -0.071 5.071 5 N -0.299 5.299 6 C 0.011 3.989 7 C -0.078 4.078 8 C 0.603 3.397 9 O -0.556 6.556 10 N -0.687 5.687 11 C 0.124 3.876 12 C 0.432 3.568 13 O -0.623 6.623 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.008 4.008 18 N -0.915 5.915 19 Si 0.993 3.007 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.270 1.270 23 H 0.065 0.935 24 H 0.113 0.887 25 H 0.048 0.952 26 H 0.131 0.869 27 H 0.122 0.878 28 H 0.223 0.777 29 H 0.418 0.582 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.400 0.600 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -6.864 -13.934 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.027 4.027 3 N -0.044 5.044 4 N -0.051 5.051 5 N -0.161 5.161 6 C -0.150 4.150 7 C -0.212 4.212 8 C 0.387 3.613 9 O -0.435 6.435 10 N -0.341 5.341 11 C -0.003 4.003 12 C 0.219 3.781 13 O -0.511 6.511 14 N -0.193 5.193 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.209 4.209 18 N -0.555 5.555 19 Si 0.817 3.183 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.196 1.196 23 H 0.084 0.916 24 H 0.132 0.868 25 H 0.067 0.933 26 H 0.149 0.851 27 H 0.140 0.860 28 H 0.239 0.761 29 H 0.257 0.743 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.234 0.766 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.336 -7.005 -15.363 17.211 hybrid contribution 0.261 0.500 1.964 2.043 sum -3.075 -6.505 -13.399 15.209 Atomic orbital electron populations 1.22085 0.91665 1.05497 1.02413 1.22800 0.97605 0.74330 1.07946 1.48188 1.38964 1.14282 1.02995 1.78178 1.16282 0.98439 1.12219 1.74890 1.16410 1.11392 1.13430 1.24422 1.01441 0.97561 0.91615 1.21811 1.13761 0.94904 0.90734 1.16574 0.77210 0.84812 0.82696 1.90765 1.50615 1.18160 1.83987 1.45293 1.67058 1.17039 1.04661 1.20892 1.04218 0.95625 0.79545 1.20393 0.84352 0.89974 0.83429 1.90495 1.55025 1.30549 1.74990 1.41809 1.58289 1.14768 1.04466 1.19697 1.44527 0.94209 0.88204 0.89494 1.26066 0.96280 1.00358 0.98215 1.69664 1.46714 1.25329 1.13808 0.84975 0.78931 0.77594 0.76808 1.19539 1.19803 1.19555 0.91551 0.86846 0.93293 0.85062 0.86039 0.76096 0.74298 0.87692 0.87718 0.76586 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.24 71.98 0.74 -1.51 16 2 C 0.09 1.52 6.79 86.38 0.59 2.11 16 3 N -0.25 -5.79 3.39 -335.43 -1.14 -6.93 16 4 N -0.07 -1.88 13.14 37.02 0.49 -1.39 16 5 N -0.30 -8.35 12.35 -57.50 -0.71 -9.06 16 6 C 0.01 0.26 11.54 84.18 0.97 1.23 16 7 C -0.08 -1.97 6.98 40.41 0.28 -1.68 16 8 C 0.60 16.50 7.80 86.61 0.68 17.18 16 9 O -0.56 -16.71 14.75 -4.09 -0.06 -16.77 16 10 N -0.69 -19.58 5.52 -470.29 -2.59 -22.17 16 11 C 0.12 3.91 6.16 85.63 0.53 4.43 16 12 C 0.43 18.24 7.85 87.66 0.69 18.93 16 13 O -0.62 -29.89 15.24 -3.08 -0.05 -29.94 16 14 N -0.56 -26.23 5.29 -306.99 -1.62 -27.85 16 15 C -0.34 -17.78 9.68 84.04 0.81 -16.96 16 16 H 0.09 4.83 7.16 -2.91 -0.02 4.81 16 17 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 18 N -0.92 -46.92 13.05 21.66 0.28 -46.64 16 19 Si 0.99 40.49 29.55 68.60 2.03 42.52 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.12 2.21 6.11 -2.39 -0.01 2.19 16 28 H 0.22 4.12 7.56 -2.91 -0.02 4.10 16 29 H 0.42 11.72 6.47 -92.71 -0.60 11.12 16 30 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 31 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.40 17.94 7.90 -92.71 -0.73 17.20 16 33 H 0.28 13.49 8.31 -92.70 -0.77 12.72 16 Total: -1.00 -64.51 298.49 2.22 -62.30 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.16 Total: 32.16 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 5.75 Total: 23.77 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -5.30 Total: -114.04 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.11 Total: -46.71 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -64.51 2.22 -62.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117887173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.944 kcal (2) G-P(sol) polarization free energy of solvation -64.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds