Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46870 * 2 1 4 4 C 1.37098 * 119.99700 * 264.76050 * 3 2 1 5 5 H 1.08000 * 119.99929 * 138.85464 * 4 3 2 6 6 C 1.38948 * 120.00493 * 318.86292 * 4 3 2 7 7 N 1.31409 * 119.99566 * 341.81971 * 6 4 3 8 8 Si 1.86795 * 120.00384 * 161.82681 * 6 4 3 9 9 H 1.48501 * 109.47386 * 89.99646 * 8 6 4 10 10 H 1.48499 * 109.47041 * 209.99599 * 8 6 4 11 11 H 1.48497 * 109.46945 * 329.99838 * 8 6 4 12 12 C 1.34770 * 120.00304 * 84.77066 * 3 2 1 13 13 O 1.21296 * 120.00196 * 180.02562 * 12 3 2 14 14 C 1.50703 * 119.99938 * 359.97438 * 12 3 2 15 15 N 1.46502 * 109.47383 * 180.02562 * 14 12 3 16 16 C 1.34579 * 125.75058 * 124.99662 * 15 14 12 17 17 N 1.30875 * 107.62578 * 180.02562 * 16 15 14 18 18 C 1.34552 * 107.26803 * 0.02562 * 17 16 15 19 19 C 1.47867 * 126.04673 * 180.02562 * 18 17 16 20 20 N 1.34779 * 119.99930 * 359.97438 * 19 18 17 21 21 O 1.21551 * 120.00120 * 179.97438 * 19 18 17 22 22 N 1.28853 * 125.74417 * 305.00429 * 15 14 12 23 23 H 1.09002 * 109.46693 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47132 * 300.00311 * 1 2 3 25 25 H 1.09003 * 109.46915 * 60.00356 * 1 2 3 26 26 H 1.08995 * 109.47132 * 239.99689 * 2 1 3 27 27 H 1.09003 * 109.46915 * 119.99644 * 2 1 3 28 28 H 0.97006 * 119.99948 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46785 * 60.00453 * 14 12 3 30 30 H 1.08999 * 109.47168 * 300.00176 * 14 12 3 31 31 H 1.08000 * 126.18559 * 0.27172 * 16 15 14 32 32 H 0.97005 * 120.00017 * 359.97438 * 20 19 18 33 33 H 0.97000 * 119.99896 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3490 1.9913 -1.1824 5 1 2.0744 3.0217 -1.3536 6 6 3.0372 1.2840 -2.1605 7 7 3.6792 0.1817 -1.8450 8 14 3.0501 1.9002 -3.9239 9 1 4.2057 2.8117 -4.1214 10 1 3.1661 0.7458 -4.8507 11 1 1.7887 2.6330 -4.2013 12 6 2.1426 2.0520 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7788 1.3815 2.4619 15 7 1.9999 2.3131 3.5708 16 6 1.0848 2.6735 4.4893 17 7 1.6578 3.5169 5.3099 18 6 2.9279 3.6766 4.8957 19 6 3.9468 4.5422 5.5276 20 7 3.6335 5.2629 6.6226 21 8 5.0669 4.6038 5.0595 22 7 3.1035 2.9254 3.8308 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1600 -0.3119 -2.5278 29 1 2.4003 0.4969 2.6007 30 1 0.7293 1.0882 2.4381 31 1 0.0635 2.3263 4.5423 32 1 2.7395 5.2141 6.9959 33 1 4.3017 5.8310 7.0368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118290778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = 32.191373 kcal Electronic energy + Delta-G solvation = -20186.240030 eV Core-core repulsion = 16863.851586 eV Total energy + Delta-G solvation = -3322.388444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.17644 -39.05488 -38.65904 -35.27083 -34.18472 -33.37090 -32.20644 -31.44961 -29.64856 -28.33745 -25.14437 -23.98589 -22.60491 -22.06815 -20.49118 -19.38647 -18.03975 -17.15133 -16.79831 -16.65186 -15.98334 -15.59994 -15.12694 -14.90874 -14.39828 -14.12715 -13.94969 -13.77804 -13.15893 -12.92464 -12.48347 -11.92725 -11.73363 -11.54302 -11.18724 -11.10440 -10.56739 -10.43740 -10.31564 -10.24774 -10.21061 -10.16278 -9.67840 -9.43171 -9.04861 -8.57014 -7.59644 -6.44303 -4.13713 1.73281 2.22340 2.42676 3.11782 3.21388 3.25272 3.42807 3.60561 3.61462 4.04414 4.30395 4.51725 4.71471 4.88870 4.94621 5.22180 5.28717 5.46231 5.70688 5.97536 6.07269 6.21309 6.26239 6.49977 6.65336 6.69961 6.78709 7.02694 7.30764 7.48061 8.11904 8.19750 8.33754 8.41816 9.02566 9.19808 9.77807 10.60938 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.004996 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.194702 B = 5603.491849 C = 6281.454225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.432 5.432 4 C -0.311 4.311 5 H 0.090 0.910 6 C 0.042 3.958 7 N -0.868 5.868 8 Si 0.921 3.079 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.445 3.555 13 O -0.549 6.549 14 C 0.097 3.903 15 N -0.272 5.272 16 C 0.183 3.817 17 N -0.492 5.492 18 C 0.112 3.888 19 C 0.627 3.373 20 N -0.838 5.838 21 O -0.520 6.520 22 N -0.203 5.203 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.224 0.776 32 H 0.409 0.591 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 -1.413 11.350 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.152 5.152 4 C -0.439 4.439 5 H 0.107 0.893 6 C -0.163 4.163 7 N -0.505 5.505 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.230 3.770 13 O -0.430 6.430 14 C -0.028 4.028 15 N -0.068 5.068 16 C -0.112 4.112 17 N -0.219 5.219 18 C -0.167 4.167 19 C 0.407 3.593 20 N -0.403 5.403 21 O -0.391 6.391 22 N -0.043 5.043 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.240 0.760 32 H 0.239 0.761 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.165 -0.947 10.723 12.931 hybrid contribution -0.536 0.018 -0.665 0.854 sum -7.701 -0.929 10.059 12.702 Atomic orbital electron populations 1.22244 0.97842 1.00722 1.01632 1.21580 0.91818 0.85411 1.03966 1.43400 1.55823 1.11727 1.04274 1.19363 1.35552 0.98776 0.90165 0.89255 1.25451 0.93679 0.96433 1.00785 1.69911 1.28880 1.17390 1.34290 0.86025 0.79144 0.78427 0.81691 1.20106 1.20702 1.19300 1.20064 0.83877 0.88815 0.84217 1.90664 1.48594 1.18029 1.85667 1.22244 1.04514 0.91033 0.84960 1.47059 1.07014 1.31133 1.21563 1.26338 0.98814 0.97506 0.88557 1.71107 1.05674 1.17318 1.27756 1.23508 0.92742 1.04408 0.96027 1.16252 0.84852 0.78340 0.79812 1.43407 1.18151 1.48352 1.30430 1.90883 1.20893 1.64624 1.62743 1.74516 1.08963 1.07283 1.13527 0.92648 0.94127 0.91997 0.87315 0.93304 0.92013 0.86460 0.85903 0.76013 0.76111 0.76116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.15 37.16 0.38 -2.08 16 2 C 0.10 1.83 5.41 -4.04 -0.02 1.81 16 3 N -0.43 -10.17 2.50 -114.81 -0.29 -10.46 16 4 C -0.31 -8.30 8.84 -14.93 -0.13 -8.43 16 5 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 6 C 0.04 1.07 4.95 -17.47 -0.09 0.99 16 7 N -0.87 -22.69 11.61 55.50 0.64 -22.04 16 8 Si 0.92 20.15 29.59 -169.99 -5.03 15.12 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 C 0.45 10.32 7.60 -10.99 -0.08 10.23 16 13 O -0.55 -15.48 15.58 5.54 0.09 -15.39 16 14 C 0.10 1.58 5.53 -5.19 -0.03 1.56 16 15 N -0.27 -4.78 3.18 -63.76 -0.20 -4.98 16 16 C 0.18 2.53 12.57 -90.48 -1.14 1.39 16 17 N -0.49 -7.66 11.09 -12.36 -0.14 -7.80 16 18 C 0.11 2.09 7.96 -156.35 -1.24 0.85 16 19 C 0.63 10.96 8.10 -12.32 -0.10 10.86 16 20 N -0.84 -9.53 8.87 30.53 0.27 -9.26 16 21 O -0.52 -11.17 17.92 5.32 0.10 -11.08 16 22 N -0.20 -4.35 11.04 32.07 0.35 -3.99 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.52 6.59 -51.93 -0.34 0.17 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.11 2.36 5.76 -51.93 -0.30 2.06 16 27 H 0.05 0.80 6.66 -51.93 -0.35 0.46 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.12 1.74 7.41 -51.93 -0.38 1.36 16 30 H 0.12 1.41 6.46 -51.93 -0.34 1.08 16 31 H 0.22 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.41 3.80 8.54 -40.82 -0.35 3.45 16 33 H 0.41 3.59 8.93 -40.82 -0.36 3.23 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -37.13 294.65 -5.46 -42.59 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.23 Total: 5.69 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: -2.46 Total: 17.16 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.64 Total: -58.53 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.18 Total: -26.47 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -37.13 -5.46 -42.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118290778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.777 kcal (2) G-P(sol) polarization free energy of solvation -37.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds