Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46870 * 2 1 4 4 C 1.37098 * 119.99700 * 264.76050 * 3 2 1 5 5 H 1.08000 * 119.99929 * 138.85464 * 4 3 2 6 6 C 1.38948 * 120.00493 * 318.86292 * 4 3 2 7 7 N 1.31409 * 119.99566 * 341.81971 * 6 4 3 8 8 Si 1.86795 * 120.00384 * 161.82681 * 6 4 3 9 9 H 1.48501 * 109.47386 * 89.99646 * 8 6 4 10 10 H 1.48499 * 109.47041 * 209.99599 * 8 6 4 11 11 H 1.48497 * 109.46945 * 329.99838 * 8 6 4 12 12 C 1.34770 * 120.00304 * 84.77066 * 3 2 1 13 13 O 1.21296 * 120.00196 * 180.02562 * 12 3 2 14 14 C 1.50703 * 119.99938 * 359.97438 * 12 3 2 15 15 N 1.46502 * 109.47383 * 180.02562 * 14 12 3 16 16 C 1.34579 * 125.75058 * 124.99662 * 15 14 12 17 17 N 1.30875 * 107.62578 * 180.02562 * 16 15 14 18 18 C 1.34552 * 107.26803 * 0.02562 * 17 16 15 19 19 C 1.47867 * 126.04673 * 180.02562 * 18 17 16 20 20 N 1.34779 * 119.99930 * 359.97438 * 19 18 17 21 21 O 1.21551 * 120.00120 * 179.97438 * 19 18 17 22 22 N 1.28853 * 125.74417 * 305.00429 * 15 14 12 23 23 H 1.09002 * 109.46693 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47132 * 300.00311 * 1 2 3 25 25 H 1.09003 * 109.46915 * 60.00356 * 1 2 3 26 26 H 1.08995 * 109.47132 * 239.99689 * 2 1 3 27 27 H 1.09003 * 109.46915 * 119.99644 * 2 1 3 28 28 H 0.97006 * 119.99948 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46785 * 60.00453 * 14 12 3 30 30 H 1.08999 * 109.47168 * 300.00176 * 14 12 3 31 31 H 1.08000 * 126.18559 * 0.27172 * 16 15 14 32 32 H 0.97005 * 120.00017 * 359.97438 * 20 19 18 33 33 H 0.97000 * 119.99896 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3490 1.9913 -1.1824 5 1 2.0744 3.0217 -1.3536 6 6 3.0372 1.2840 -2.1605 7 7 3.6792 0.1817 -1.8450 8 14 3.0501 1.9002 -3.9239 9 1 4.2057 2.8117 -4.1214 10 1 3.1661 0.7458 -4.8507 11 1 1.7887 2.6330 -4.2013 12 6 2.1426 2.0520 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7788 1.3815 2.4619 15 7 1.9999 2.3131 3.5708 16 6 1.0848 2.6735 4.4893 17 7 1.6578 3.5169 5.3099 18 6 2.9279 3.6766 4.8957 19 6 3.9468 4.5422 5.5276 20 7 3.6335 5.2629 6.6226 21 8 5.0669 4.6038 5.0595 22 7 3.1035 2.9254 3.8308 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1600 -0.3119 -2.5278 29 1 2.4003 0.4969 2.6007 30 1 0.7293 1.0882 2.4381 31 1 0.0635 2.3263 4.5423 32 1 2.7395 5.2141 6.9959 33 1 4.3017 5.8310 7.0368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118290778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = 1.989543 kcal Electronic energy + Delta-G solvation = -20187.549680 eV Core-core repulsion = 16863.851586 eV Total energy + Delta-G solvation = -3323.698093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.43853 -40.57386 -40.22313 -37.02617 -35.55190 -34.62406 -34.01030 -32.76757 -31.16428 -29.74605 -26.89900 -25.38921 -24.00520 -23.34870 -21.80073 -21.00454 -19.25298 -18.83715 -18.27446 -18.00026 -17.37689 -17.20723 -16.75117 -16.13695 -15.97183 -15.62404 -15.50886 -15.06890 -14.57453 -14.42525 -13.97538 -13.57809 -13.30235 -12.93353 -12.88994 -12.65390 -12.31351 -12.09194 -11.79913 -11.66224 -11.50020 -11.46989 -10.95312 -10.91502 -10.77674 -10.28190 -9.45159 -8.38715 -6.15176 0.37977 1.05951 1.24802 1.34926 1.40080 1.51586 1.90627 2.21808 2.26588 2.33221 2.88337 2.98666 3.22305 3.60211 3.81361 3.92629 4.03778 4.20161 4.40449 4.64439 4.87282 4.91141 5.08883 5.26126 5.37180 5.43146 5.57514 5.61543 5.75790 6.18716 6.21659 6.48559 7.02459 7.13509 7.20072 7.37097 7.96068 8.64581 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.004996 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.194702 B = 5603.491849 C = 6281.454225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 N -0.444 5.444 4 C -0.341 4.341 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.888 5.888 8 Si 0.978 3.022 9 H -0.286 1.286 10 H -0.264 1.264 11 H -0.264 1.264 12 C 0.431 3.569 13 O -0.614 6.614 14 C 0.111 3.889 15 N -0.286 5.286 16 C 0.208 3.792 17 N -0.492 5.492 18 C 0.102 3.898 19 C 0.619 3.381 20 N -0.801 5.801 21 O -0.574 6.574 22 N -0.273 5.273 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.274 0.726 29 H 0.134 0.866 30 H 0.183 0.817 31 H 0.287 0.713 32 H 0.423 0.577 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -2.746 12.729 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.031 4.031 3 N -0.164 5.164 4 C -0.469 4.469 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.525 5.525 8 Si 0.802 3.198 9 H -0.212 1.212 10 H -0.189 1.189 11 H -0.188 1.188 12 C 0.218 3.782 13 O -0.499 6.499 14 C -0.013 4.013 15 N -0.081 5.081 16 C -0.086 4.086 17 N -0.218 5.218 18 C -0.177 4.177 19 C 0.400 3.600 20 N -0.368 5.368 21 O -0.450 6.450 22 N -0.113 5.113 23 H 0.108 0.892 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.200 0.800 31 H 0.302 0.698 32 H 0.256 0.744 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.851 -2.312 12.145 15.808 hybrid contribution 0.225 0.446 -1.010 1.127 sum -9.626 -1.865 11.135 14.837 Atomic orbital electron populations 1.22144 0.94207 1.03049 1.01932 1.21766 0.94758 0.82700 1.03852 1.43701 1.55667 1.13218 1.03775 1.19267 1.36979 0.98131 0.92529 0.92373 1.26102 0.93016 0.96558 1.03840 1.69971 1.29087 1.18037 1.35361 0.85182 0.78667 0.78217 0.77754 1.21209 1.18861 1.18798 1.21093 0.82577 0.88175 0.86315 1.90623 1.51222 1.21000 1.87079 1.22270 1.08162 0.90030 0.80798 1.47117 1.06925 1.31610 1.22437 1.27625 1.00040 0.94949 0.86027 1.71139 1.04236 1.18144 1.28319 1.23770 0.94094 1.04165 0.95687 1.16457 0.84086 0.78704 0.80729 1.43138 1.19200 1.46345 1.28095 1.90847 1.22870 1.66647 1.64632 1.74427 1.11833 1.09582 1.15429 0.89198 0.91315 0.94248 0.90346 0.90497 0.91641 0.84883 0.79967 0.69757 0.74422 0.74365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.15 71.98 0.73 -3.35 16 2 C 0.09 3.34 5.41 86.38 0.47 3.81 16 3 N -0.44 -21.02 2.50 -635.54 -1.59 -22.61 16 4 C -0.34 -18.83 8.84 84.04 0.74 -18.08 16 5 H 0.06 3.49 7.82 -2.91 -0.02 3.47 16 6 C 0.01 0.43 4.95 84.93 0.42 0.85 16 7 N -0.89 -46.99 11.61 21.66 0.25 -46.74 16 8 Si 0.98 42.06 29.59 68.60 2.03 44.09 16 9 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 12 C 0.43 19.98 7.60 87.66 0.67 20.65 16 13 O -0.61 -35.96 15.58 -3.08 -0.05 -36.01 16 14 C 0.11 3.30 5.53 85.63 0.47 3.77 16 15 N -0.29 -9.44 3.18 -355.64 -1.13 -10.57 16 16 C 0.21 4.90 12.57 180.30 2.27 7.16 16 17 N -0.49 -14.05 11.09 -193.03 -2.14 -16.19 16 18 C 0.10 3.78 7.96 137.13 1.09 4.87 16 19 C 0.62 21.84 8.10 86.79 0.70 22.54 16 20 N -0.80 -17.23 8.87 -175.58 -1.56 -18.79 16 21 O -0.57 -25.65 17.92 -3.88 -0.07 -25.72 16 22 N -0.27 -11.76 11.04 -52.44 -0.58 -12.34 16 23 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 1.41 6.59 -2.39 -0.02 1.39 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 3.37 5.76 -2.39 -0.01 3.35 16 27 H 0.08 2.31 6.66 -2.39 -0.02 2.29 16 28 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 29 H 0.13 3.55 7.41 -2.39 -0.02 3.53 16 30 H 0.18 3.11 6.46 -2.39 -0.02 3.10 16 31 H 0.29 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.42 6.93 8.54 -92.70 -0.79 6.14 16 33 H 0.42 6.86 8.93 -92.71 -0.83 6.03 16 Total: -1.00 -89.58 294.65 2.29 -87.28 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.43 Total: 15.36 kcal Atomic # 6 Polarization: 34.66 SS G_CDS: 7.56 Total: 42.22 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.75 Total: -127.23 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -0.12 Total: -61.73 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -89.58 2.29 -87.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118290778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.273 kcal (2) G-P(sol) polarization free energy of solvation -89.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds