Wall clock time and date at job start Mon Mar 30 2020 00:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36157 * 125.90986 * 2 1 4 4 C 1.35872 * 105.98005 * 179.97438 * 3 2 1 5 5 N 1.40543 * 126.79381 * 179.97438 * 4 3 2 6 6 C 1.34782 * 120.00113 * 0.02562 * 5 4 3 7 7 O 1.21595 * 119.99484 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00146 * 179.97438 * 6 5 4 9 9 C 1.47572 * 134.49163 * 180.02562 * 8 6 5 10 10 C 1.53951 * 86.11583 * 155.36029 * 9 8 6 11 11 O 1.42897 * 113.74300 * 269.15347 * 10 9 8 12 12 C 1.50705 * 113.74111 * 137.95217 * 10 9 8 13 13 H 1.07995 * 119.99667 * 17.19322 * 12 10 9 14 14 C 1.37876 * 119.99899 * 197.19139 * 12 10 9 15 15 N 1.31516 * 119.99917 * 194.36987 * 14 12 10 16 16 Si 1.86802 * 120.00062 * 14.36608 * 14 12 10 17 17 H 1.48496 * 109.47125 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47124 * 300.00105 * 16 14 12 19 19 H 1.48498 * 109.47140 * 60.00316 * 16 14 12 20 20 C 1.47814 * 134.45384 * 359.86930 * 8 6 5 21 21 N 1.34022 * 106.41172 * 0.24132 * 4 3 2 22 22 N 1.28588 * 109.05283 * 359.59715 * 21 4 3 23 23 H 1.09000 * 109.46928 * 90.00266 * 1 2 3 24 24 H 1.09004 * 109.46936 * 210.00110 * 1 2 3 25 25 H 1.08996 * 109.46607 * 330.00298 * 1 2 3 26 26 H 1.08004 * 127.01115 * 359.94979 * 3 2 1 27 27 H 0.97002 * 120.00097 * 179.97438 * 5 4 3 28 28 H 1.09001 * 113.77187 * 41.06251 * 9 8 6 29 29 H 1.08998 * 113.77370 * 269.65834 * 9 8 6 30 30 H 0.96694 * 114.00247 * 174.14447 * 11 10 9 31 31 H 0.96994 * 119.99617 * 354.85921 * 15 14 12 32 32 H 1.09002 * 113.76589 * 90.38278 * 20 8 6 33 33 H 1.09000 * 113.83818 * 318.91814 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1028 0.0000 4 6 3.5410 0.6396 0.0006 5 7 4.7160 1.4108 0.0003 6 6 4.6390 2.7564 -0.0001 7 8 3.5529 3.3031 0.0002 8 7 5.7658 3.4959 0.0001 9 6 6.0528 4.9434 0.0003 10 6 7.4018 4.5696 0.6409 11 8 7.3759 4.5544 2.0695 12 6 8.5722 5.3376 0.0826 13 1 8.4044 6.2458 -0.4772 14 6 9.8570 4.8809 0.2867 15 7 10.8809 5.6736 0.0568 16 14 10.1433 3.1363 0.8899 17 1 11.6017 2.8936 1.0286 18 1 9.4841 2.9537 2.2079 19 1 9.5718 2.1748 -0.0869 20 6 7.2101 3.1818 0.0032 21 7 3.4588 -0.6980 -0.0045 22 7 2.2199 -1.0425 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 1.9464 2.1352 -0.0008 27 1 5.5824 0.9746 0.0012 28 1 5.4004 5.5206 0.6555 29 1 6.1442 5.3734 -0.9971 30 1 8.1935 4.2342 2.4744 31 1 10.7370 6.5528 -0.3266 32 1 7.6424 3.0928 -0.9934 33 1 7.4798 2.3552 0.6607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119273333.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:33 Heat of formation + Delta-G solvation = 80.875335 kcal Electronic energy + Delta-G solvation = -20177.092082 eV Core-core repulsion = 16856.814733 eV Total energy + Delta-G solvation = -3320.277349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.19135 -40.14134 -38.21192 -35.25230 -34.32830 -33.85445 -32.67861 -30.36598 -28.52517 -27.96613 -25.87945 -24.94134 -22.71536 -21.95339 -20.39403 -19.21848 -18.23329 -17.97946 -17.23737 -16.72253 -16.47613 -15.68027 -15.38128 -14.79267 -14.33351 -14.27132 -13.70030 -13.57407 -13.36839 -13.19271 -12.84186 -12.37454 -12.12991 -11.84509 -11.30915 -11.11328 -10.99863 -10.85068 -10.47526 -10.21275 -9.93422 -9.80434 -9.52887 -9.09624 -8.66941 -8.39926 -7.97863 -6.78415 -4.52668 1.56179 2.09811 2.43064 2.63495 3.05157 3.13780 3.31076 3.52317 3.90201 4.13880 4.37435 4.71982 4.74448 4.77822 5.01241 5.08098 5.20739 5.40942 5.45828 5.57674 5.83417 5.86981 6.05884 6.18029 6.23257 6.54464 6.61674 6.66260 7.24679 7.48520 8.03320 8.19177 8.49036 8.51797 8.64137 8.68080 9.23311 10.58364 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040123 B = 0.004587 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.693617 B = 6102.142268 C = 6548.059852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.296 5.296 3 C -0.059 4.059 4 C 0.232 3.768 5 N -0.646 5.646 6 C 0.733 3.267 7 O -0.591 6.591 8 N -0.644 5.644 9 C 0.153 3.847 10 C 0.202 3.798 11 O -0.565 6.565 12 C -0.618 4.618 13 H 0.071 0.929 14 C 0.037 3.963 15 N -0.885 5.885 16 Si 1.039 2.961 17 H -0.278 1.278 18 H -0.279 1.279 19 H -0.273 1.273 20 C 0.054 3.946 21 N -0.289 5.289 22 N -0.077 5.077 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.215 0.785 27 H 0.414 0.586 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.368 0.632 31 H 0.275 0.725 32 H 0.097 0.903 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.687 -8.907 -0.492 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.094 5.094 3 C -0.210 4.210 4 C 0.002 3.998 5 N -0.296 5.296 6 C 0.436 3.564 7 O -0.470 6.470 8 N -0.381 5.381 9 C 0.031 3.969 10 C 0.160 3.840 11 O -0.373 6.373 12 C -0.656 4.656 13 H 0.089 0.911 14 C -0.172 4.172 15 N -0.517 5.517 16 Si 0.867 3.133 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.198 1.198 20 C -0.069 4.069 21 N -0.161 5.161 22 N -0.057 5.057 23 H 0.108 0.892 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.231 0.769 27 H 0.250 0.750 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.217 0.783 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.979 -10.893 -0.132 18.521 hybrid contribution -0.300 1.696 -0.512 1.797 sum -15.279 -9.196 -0.644 17.845 Atomic orbital electron populations 1.22215 0.72526 1.05801 1.04874 1.47202 1.09254 1.04864 1.48060 1.23927 0.89421 0.94863 1.12837 1.18372 0.86793 0.88816 1.05831 1.41641 1.06453 1.04366 1.77142 1.15170 0.83813 0.79629 0.77794 1.90728 1.26088 1.70751 1.59476 1.49256 1.04196 1.09628 1.75018 1.23194 0.94197 0.79104 1.00384 1.20370 0.94026 0.89772 0.79796 1.86376 1.41991 1.88817 1.20147 1.22174 0.91080 1.12332 1.40014 0.91052 1.25834 0.92099 1.04377 0.94868 1.70806 1.33158 1.10061 1.37709 0.84151 0.77338 0.75098 0.76735 1.20292 1.20614 1.19843 1.24798 0.77746 1.02107 1.02253 1.75007 1.10238 1.09770 1.21093 1.78145 0.95207 1.12302 1.20007 0.89181 0.88177 0.88208 0.76894 0.74985 0.90540 0.88876 0.78264 0.91471 0.88457 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.40 59.85 0.68 1.21 16 2 N -0.30 -3.63 3.77 -67.69 -0.25 -3.89 16 3 C -0.06 -0.86 10.48 -16.48 -0.17 -1.03 16 4 C 0.23 3.86 8.15 -153.28 -1.25 2.61 16 5 N -0.65 -10.83 5.47 -15.90 -0.09 -10.92 16 6 C 0.73 13.92 8.73 -86.91 -0.76 13.16 16 7 O -0.59 -12.03 14.32 5.28 0.08 -11.96 16 8 N -0.64 -12.40 3.61 -183.89 -0.66 -13.07 16 9 C 0.15 3.05 8.23 -2.97 -0.02 3.03 16 10 C 0.20 4.38 1.07 -90.85 -0.10 4.28 16 11 O -0.56 -12.58 13.47 -35.23 -0.47 -13.05 16 12 C -0.62 -15.37 9.04 -34.44 -0.31 -15.69 16 13 H 0.07 1.91 8.06 -52.49 -0.42 1.48 16 14 C 0.04 0.93 5.44 -17.82 -0.10 0.83 16 15 N -0.88 -24.48 13.70 55.43 0.76 -23.72 16 16 Si 1.04 21.45 24.55 -169.99 -4.17 17.28 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -5.22 5.81 56.52 0.33 -4.89 16 19 H -0.27 -5.09 6.48 56.52 0.37 -4.72 16 20 C 0.05 1.02 5.22 -2.85 -0.01 1.01 16 21 N -0.29 -4.86 12.41 31.10 0.39 -4.47 16 22 N -0.08 -1.15 13.15 60.35 0.79 -0.36 16 23 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.21 3.12 6.00 -52.48 -0.31 2.81 16 27 H 0.41 6.26 8.43 -40.82 -0.34 5.91 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 30 H 0.37 7.59 6.07 45.56 0.28 7.87 16 31 H 0.27 7.59 8.73 -40.82 -0.36 7.23 16 32 H 0.10 1.80 7.97 -51.93 -0.41 1.39 16 33 H 0.07 1.15 6.87 -51.93 -0.36 0.79 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -31.38 284.38 -4.34 -35.73 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -2.95 Total: 14.73 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -2.04 Total: 9.41 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.93 Total: -56.42 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.40 Total: -25.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.17 Total: 17.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.38 -4.34 -35.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119273333.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.603 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds