Wall clock time and date at job start Mon Mar 30 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36157 * 125.90986 * 2 1 4 4 C 1.35872 * 105.98005 * 179.97438 * 3 2 1 5 5 N 1.40543 * 126.79381 * 179.97438 * 4 3 2 6 6 C 1.34782 * 120.00113 * 0.02562 * 5 4 3 7 7 O 1.21595 * 119.99484 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00146 * 179.97438 * 6 5 4 9 9 C 1.47572 * 134.49163 * 180.02562 * 8 6 5 10 10 C 1.53951 * 86.11583 * 155.36029 * 9 8 6 11 11 O 1.42897 * 113.74300 * 269.15347 * 10 9 8 12 12 C 1.50705 * 113.74111 * 137.95217 * 10 9 8 13 13 H 1.07995 * 119.99667 * 17.19322 * 12 10 9 14 14 C 1.37876 * 119.99899 * 197.19139 * 12 10 9 15 15 N 1.31516 * 119.99917 * 194.36987 * 14 12 10 16 16 Si 1.86802 * 120.00062 * 14.36608 * 14 12 10 17 17 H 1.48496 * 109.47125 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47124 * 300.00105 * 16 14 12 19 19 H 1.48498 * 109.47140 * 60.00316 * 16 14 12 20 20 C 1.47814 * 134.45384 * 359.86930 * 8 6 5 21 21 N 1.34022 * 106.41172 * 0.24132 * 4 3 2 22 22 N 1.28588 * 109.05283 * 359.59715 * 21 4 3 23 23 H 1.09000 * 109.46928 * 90.00266 * 1 2 3 24 24 H 1.09004 * 109.46936 * 210.00110 * 1 2 3 25 25 H 1.08996 * 109.46607 * 330.00298 * 1 2 3 26 26 H 1.08004 * 127.01115 * 359.94979 * 3 2 1 27 27 H 0.97002 * 120.00097 * 179.97438 * 5 4 3 28 28 H 1.09001 * 113.77187 * 41.06251 * 9 8 6 29 29 H 1.08998 * 113.77370 * 269.65834 * 9 8 6 30 30 H 0.96694 * 114.00247 * 174.14447 * 11 10 9 31 31 H 0.96994 * 119.99617 * 354.85921 * 15 14 12 32 32 H 1.09002 * 113.76589 * 90.38278 * 20 8 6 33 33 H 1.09000 * 113.83818 * 318.91814 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1028 0.0000 4 6 3.5410 0.6396 0.0006 5 7 4.7160 1.4108 0.0003 6 6 4.6390 2.7564 -0.0001 7 8 3.5529 3.3031 0.0002 8 7 5.7658 3.4959 0.0001 9 6 6.0528 4.9434 0.0003 10 6 7.4018 4.5696 0.6409 11 8 7.3759 4.5544 2.0695 12 6 8.5722 5.3376 0.0826 13 1 8.4044 6.2458 -0.4772 14 6 9.8570 4.8809 0.2867 15 7 10.8809 5.6736 0.0568 16 14 10.1433 3.1363 0.8899 17 1 11.6017 2.8936 1.0286 18 1 9.4841 2.9537 2.2079 19 1 9.5718 2.1748 -0.0869 20 6 7.2101 3.1818 0.0032 21 7 3.4588 -0.6980 -0.0045 22 7 2.2199 -1.0425 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 1.9464 2.1352 -0.0008 27 1 5.5824 0.9746 0.0012 28 1 5.4004 5.5206 0.6555 29 1 6.1442 5.3734 -0.9971 30 1 8.1935 4.2342 2.4744 31 1 10.7370 6.5528 -0.3266 32 1 7.6424 3.0928 -0.9934 33 1 7.4798 2.3552 0.6607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119273333.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:32 Heat of formation + Delta-G solvation = 54.624124 kcal Electronic energy + Delta-G solvation = -20178.230420 eV Core-core repulsion = 16856.814733 eV Total energy + Delta-G solvation = -3321.415687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.29086 -41.64809 -39.75382 -36.44478 -36.01297 -34.96983 -34.62808 -31.66059 -29.97733 -28.81413 -27.43393 -26.71005 -23.93509 -23.04403 -21.95687 -20.74247 -19.94439 -19.32268 -18.64684 -17.76534 -17.71778 -17.29279 -16.84547 -16.18520 -15.93808 -15.43622 -15.23196 -14.92528 -14.51790 -14.19656 -14.12249 -13.84537 -13.80287 -13.01647 -12.86415 -12.46415 -12.29987 -12.13996 -12.10269 -11.80474 -11.49619 -11.20941 -10.97115 -10.90141 -10.37829 -9.93087 -9.34169 -8.80513 -6.56990 0.48890 0.91738 1.17084 1.44417 1.52441 1.57949 1.70148 2.11935 2.44489 2.51642 2.93255 3.38971 3.60405 3.68656 3.76943 4.04151 4.29074 4.33438 4.35048 4.43336 4.48571 4.61311 4.64396 4.65358 4.72781 5.00142 5.37384 5.61617 5.63233 5.90699 5.95163 6.43535 6.74633 6.96661 7.22795 7.29755 7.34912 8.55176 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040123 B = 0.004587 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.693617 B = 6102.142268 C = 6548.059852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.278 5.278 3 C -0.057 4.057 4 C 0.209 3.791 5 N -0.637 5.637 6 C 0.733 3.267 7 O -0.608 6.608 8 N -0.644 5.644 9 C 0.152 3.848 10 C 0.192 3.808 11 O -0.572 6.572 12 C -0.620 4.620 13 H 0.036 0.964 14 C -0.007 4.007 15 N -0.922 5.922 16 Si 1.068 2.932 17 H -0.291 1.291 18 H -0.246 1.246 19 H -0.235 1.235 20 C 0.064 3.936 21 N -0.313 5.313 22 N -0.085 5.085 23 H 0.112 0.888 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.216 0.784 27 H 0.422 0.578 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.374 0.626 31 H 0.258 0.742 32 H 0.105 0.895 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 -11.119 -0.097 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.076 5.076 3 C -0.211 4.211 4 C -0.022 4.022 5 N -0.287 5.287 6 C 0.436 3.564 7 O -0.489 6.489 8 N -0.381 5.381 9 C 0.030 3.970 10 C 0.150 3.850 11 O -0.381 6.381 12 C -0.658 4.658 13 H 0.054 0.946 14 C -0.208 4.208 15 N -0.556 5.556 16 Si 0.888 3.112 17 H -0.218 1.218 18 H -0.171 1.171 19 H -0.159 1.159 20 C -0.058 4.058 21 N -0.184 5.184 22 N -0.065 5.065 23 H 0.130 0.870 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.232 0.768 27 H 0.259 0.741 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.225 0.775 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.910 -13.134 0.258 21.413 hybrid contribution 0.124 2.466 -0.652 2.554 sum -16.786 -10.668 -0.394 19.893 Atomic orbital electron populations 1.22806 0.68976 1.07955 1.07014 1.47656 1.11059 1.03456 1.45477 1.23952 0.89291 0.95467 1.12339 1.18611 0.87245 0.89069 1.07273 1.41416 1.07140 1.03549 1.76637 1.15152 0.83307 0.80209 0.77702 1.90716 1.26574 1.71362 1.60214 1.49081 1.04454 1.09141 1.75436 1.23152 0.93298 0.79923 1.00620 1.20336 0.93420 0.91643 0.79552 1.86361 1.42380 1.89132 1.20235 1.22286 0.92764 1.11450 1.39311 0.94565 1.27265 0.91795 1.07474 0.94239 1.70952 1.34354 1.10001 1.40336 0.83886 0.77118 0.71247 0.78983 1.21754 1.17067 1.15852 1.24655 0.77569 1.00810 1.02784 1.74973 1.11298 1.09862 1.22284 1.78065 0.95104 1.13018 1.20349 0.86985 0.86303 0.85919 0.76800 0.74090 0.90848 0.88128 0.77536 0.93210 0.87663 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 11.40 127.77 1.46 2.07 16 2 N -0.28 -6.10 3.77 -368.07 -1.39 -7.49 16 3 C -0.06 -1.57 10.48 83.47 0.87 -0.69 16 4 C 0.21 6.56 8.15 131.28 1.07 7.63 16 5 N -0.64 -20.02 5.47 -322.48 -1.76 -21.79 16 6 C 0.73 26.39 8.73 179.05 1.56 27.96 16 7 O -0.61 -23.77 14.32 -4.01 -0.06 -23.83 16 8 N -0.64 -23.45 3.61 -857.81 -3.10 -26.55 16 9 C 0.15 5.93 8.23 86.49 0.71 6.64 16 10 C 0.19 8.06 1.07 -10.88 -0.01 8.05 16 11 O -0.57 -24.39 13.47 -148.98 -2.01 -26.40 16 12 C -0.62 -31.09 9.04 25.60 0.23 -30.86 16 13 H 0.04 2.01 8.06 -2.91 -0.02 1.99 16 14 C -0.01 -0.34 5.44 84.65 0.46 0.12 16 15 N -0.92 -52.36 13.70 21.45 0.29 -52.07 16 16 Si 1.07 41.02 24.55 68.60 1.68 42.70 16 17 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.25 -8.09 5.81 99.48 0.58 -7.52 16 19 H -0.24 -7.61 6.48 99.48 0.64 -6.97 16 20 C 0.06 2.26 5.22 86.43 0.45 2.71 16 21 N -0.31 -9.99 12.41 -55.52 -0.69 -10.68 16 22 N -0.09 -2.38 13.15 37.02 0.49 -1.89 16 23 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.22 5.85 6.00 -2.91 -0.02 5.83 16 27 H 0.42 11.67 8.43 -92.71 -0.78 10.88 16 28 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.10 3.71 8.09 -2.39 -0.02 3.70 16 30 H 0.37 14.52 6.07 -74.06 -0.45 14.07 16 31 H 0.26 14.98 8.73 -92.71 -0.81 14.17 16 32 H 0.11 3.57 7.97 -2.39 -0.02 3.55 16 33 H 0.09 2.74 6.87 -2.39 -0.02 2.73 16 Total: -1.00 -68.54 284.38 -0.01 -68.55 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.28 Total: 35.80 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 6.81 Total: 23.63 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -6.16 Total: -120.47 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -2.06 Total: -50.23 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.68 Total: 42.70 kcal Total: -68.54 -0.01 -68.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119273333.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.179 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds