Wall clock time and date at job start Mon Mar 30 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47309 * 2 1 4 4 C 1.50701 * 109.47221 * 239.99755 * 2 1 3 5 5 H 1.08003 * 120.00443 * 239.99875 * 4 2 1 6 6 C 1.37877 * 119.99629 * 60.00600 * 4 2 1 7 7 N 1.31517 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00077 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46925 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47105 * 119.99541 * 8 6 4 11 11 H 1.48500 * 109.47319 * 239.99735 * 8 6 4 12 12 C 1.50706 * 109.46887 * 120.00367 * 2 1 3 13 13 O 1.20826 * 120.00088 * 120.00028 * 12 2 1 14 14 O 1.34226 * 119.99873 * 299.99861 * 12 2 1 15 15 C 1.45198 * 117.00003 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.47225 * 330.00062 * 15 14 12 17 17 C 1.53003 * 109.47194 * 90.00357 * 15 14 12 18 18 C 1.50701 * 109.47056 * 209.99996 * 15 14 12 19 19 C 1.38746 * 120.38709 * 144.99867 * 18 15 14 20 20 C 1.38507 * 118.45216 * 180.02562 * 19 18 15 21 21 C 1.38560 * 119.13742 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.65209 * 179.97438 * 21 20 19 23 23 N 1.32034 * 120.69878 * 0.27225 * 21 20 19 24 24 C 1.31936 * 121.68860 * 359.43381 * 23 21 20 25 25 H 1.08996 * 109.47251 * 299.99744 * 1 2 3 26 26 H 1.09001 * 109.47052 * 59.99713 * 1 2 3 27 27 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99545 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47379 * 60.00026 * 17 15 14 30 30 H 1.09004 * 109.46725 * 180.02562 * 17 15 14 31 31 H 1.09004 * 109.46412 * 299.99608 * 17 15 14 32 32 H 1.07995 * 120.77749 * 0.04442 * 19 18 15 33 33 H 1.07997 * 120.43500 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.60698 * 180.27092 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8298 -2.6033 8 14 2.3226 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8161 12 6 2.0323 -0.7105 1.2305 13 8 2.7269 -1.6929 1.1196 14 8 1.7080 -0.2520 2.4496 15 6 2.2275 -0.9859 3.5896 16 1 2.3417 -2.0368 3.3238 17 6 3.5875 -0.4104 3.9899 18 6 1.2694 -0.8615 4.7461 19 6 1.0860 -1.9212 5.6227 20 6 0.1952 -1.7635 6.6715 21 6 -0.4789 -0.5607 6.8090 22 9 -1.3506 -0.3957 7.8280 23 7 -0.2828 0.4238 5.9514 24 6 0.5625 0.3082 4.9451 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7083 1.1609 -3.4843 29 1 3.4733 0.6404 4.2558 30 1 3.9777 -0.9617 4.8455 31 1 4.2805 -0.5004 3.1534 32 1 1.6254 -2.8474 5.4905 33 1 0.0275 -2.5677 7.3726 34 1 0.7002 1.1366 4.2660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123006126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:00 Heat of formation + Delta-G solvation = -118.922917 kcal Electronic energy + Delta-G solvation = -19794.187984 eV Core-core repulsion = 16413.034020 eV Total energy + Delta-G solvation = -3381.153964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.09170 -41.75078 -40.89832 -37.74895 -35.90753 -34.66748 -33.20882 -32.47335 -30.36011 -27.27581 -25.96454 -25.23434 -24.61435 -22.60805 -21.39219 -19.16651 -18.73621 -18.39258 -17.92737 -17.66672 -17.16814 -16.83793 -16.57775 -15.73623 -15.52418 -14.92733 -14.91005 -14.65331 -14.29118 -14.20534 -13.92330 -13.71293 -13.52787 -13.04550 -12.91152 -12.75229 -12.59366 -12.31717 -12.26141 -12.04825 -11.74589 -11.08863 -11.04626 -11.01067 -10.74942 -10.52375 -9.99171 -8.18989 -6.31976 -0.25497 0.04087 1.41713 1.44148 1.47025 1.56286 1.84347 2.43348 2.47372 2.51119 3.11574 3.33267 3.55437 3.76880 3.83529 4.02992 4.12382 4.24408 4.35699 4.65223 4.69676 4.73458 4.76703 4.82763 4.91371 4.98621 5.06955 5.15784 5.41115 5.49241 5.53206 5.70630 5.89867 6.11834 6.52980 6.75255 7.06779 7.37229 8.87492 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036205 B = 0.004084 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.179847 B = 6853.641823 C = 7236.978762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.478 3.522 13 O -0.537 6.537 14 O -0.356 6.356 15 C 0.123 3.877 16 H 0.092 0.908 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.027 4.027 20 C -0.176 4.176 21 C 0.285 3.715 22 F -0.119 7.119 23 N -0.542 5.542 24 C 0.152 3.848 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.267 0.733 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -4.280 17.413 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.323 3.677 13 O -0.426 6.426 14 O -0.273 6.273 15 C 0.067 3.933 16 H 0.109 0.891 17 C -0.215 4.215 18 C -0.151 4.151 19 C -0.052 4.052 20 C -0.196 4.196 21 C 0.132 3.868 22 F -0.098 7.098 23 N -0.257 5.257 24 C -0.004 4.004 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.199 0.801 33 H 0.203 0.797 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.249 -3.684 17.456 17.842 hybrid contribution 0.465 -0.840 -0.870 1.296 sum 0.713 -4.524 16.586 17.206 Atomic orbital electron populations 1.21557 0.94626 0.99780 1.01902 1.18681 0.95678 0.96298 0.86349 0.93017 1.21297 1.32442 1.13228 0.90428 0.92354 1.25631 0.94929 0.95634 1.01591 1.69972 1.36739 1.23482 1.24621 0.85441 0.78321 0.78584 0.78945 1.19913 1.20034 1.19997 1.24704 0.75917 0.82424 0.84609 1.90473 1.37364 1.27634 1.87113 1.86611 1.70118 1.55661 1.14945 1.21426 0.92752 0.97747 0.81340 0.89053 1.22168 0.93697 1.02843 1.02833 1.20696 1.00354 0.96244 0.97831 1.21707 0.94161 0.98659 0.90711 1.22090 0.98306 0.97492 1.01753 1.18605 0.90125 0.91898 0.86189 1.91609 1.66815 1.96043 1.55374 1.67029 1.20083 1.33069 1.05525 1.22469 0.88725 0.97646 0.91557 0.93384 0.90573 0.95349 0.92348 0.90842 0.87966 0.92863 0.80094 0.79695 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.90 71.98 0.64 -4.96 16 2 C 0.05 2.43 2.74 -12.28 -0.03 2.40 16 3 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.54 -29.72 8.37 25.60 0.21 -29.51 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -49.93 11.32 21.45 0.24 -49.69 16 8 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.48 21.18 7.22 71.24 0.51 21.70 16 13 O -0.54 -25.74 14.68 21.97 0.32 -25.42 16 14 O -0.36 -12.70 8.95 -51.38 -0.46 -13.16 16 15 C 0.12 3.31 2.79 29.85 0.08 3.40 16 16 H 0.09 2.56 7.08 -2.39 -0.02 2.54 16 17 C -0.16 -3.59 9.53 71.98 0.69 -2.91 16 18 C -0.15 -3.40 5.02 -19.77 -0.10 -3.50 16 19 C -0.03 -0.44 9.84 22.46 0.22 -0.22 16 20 C -0.18 -2.82 10.09 22.41 0.23 -2.60 16 21 C 0.29 6.61 8.41 84.74 0.71 7.32 16 22 F -0.12 -2.80 17.29 44.97 0.78 -2.02 16 23 N -0.54 -14.93 10.37 -196.91 -2.04 -16.98 16 24 C 0.15 3.92 10.51 84.65 0.89 4.81 16 25 H 0.05 1.94 8.11 -2.39 -0.02 1.92 16 26 H 0.08 3.85 6.07 -2.39 -0.01 3.84 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.17 4.37 7.63 -2.91 -0.02 4.35 16 Total: -1.00 -64.16 302.98 6.48 -57.67 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.11 Total: 6.85 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.50 Total: -2.43 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -1.80 Total: -66.66 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.14 Total: -38.57 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -64.16 6.48 -57.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123006126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.251 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds