Wall clock time and date at job start Mon Mar 30 2020 00:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47281 * 2 1 4 4 C 1.50701 * 109.47523 * 120.00453 * 2 1 3 5 5 H 1.08003 * 120.00443 * 119.99338 * 4 2 1 6 6 C 1.37877 * 119.99629 * 300.00062 * 4 2 1 7 7 N 1.31517 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00077 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46875 * 60.00024 * 8 6 4 10 10 H 1.48503 * 109.47309 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47289 * 300.00077 * 8 6 4 12 12 C 1.50706 * 109.47100 * 240.00156 * 2 1 3 13 13 O 1.20826 * 120.00088 * 240.00101 * 12 2 1 14 14 O 1.34226 * 119.99873 * 59.99935 * 12 2 1 15 15 C 1.45198 * 117.00003 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.47225 * 330.00062 * 15 14 12 17 17 C 1.53003 * 109.47194 * 90.00357 * 15 14 12 18 18 C 1.50701 * 109.47056 * 209.99996 * 15 14 12 19 19 C 1.38746 * 120.38709 * 144.99867 * 18 15 14 20 20 C 1.38507 * 118.45216 * 180.02562 * 19 18 15 21 21 C 1.38560 * 119.13742 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.65209 * 179.97438 * 21 20 19 23 23 N 1.32034 * 120.69878 * 0.27225 * 21 20 19 24 24 C 1.31936 * 121.68860 * 359.43381 * 23 21 20 25 25 H 1.09001 * 109.46952 * 299.99955 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99771 * 1 2 3 27 27 H 1.09003 * 109.47281 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99545 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46412 * 299.99608 * 17 15 14 30 30 H 1.08991 * 109.47379 * 60.00026 * 17 15 14 31 31 H 1.09004 * 109.46725 * 180.02562 * 17 15 14 32 32 H 1.07995 * 120.77749 * 0.04442 * 19 18 15 33 33 H 1.07997 * 120.43500 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.60698 * 180.27092 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4201 5.2205 11 1 1.8260 -2.5204 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6928 -1.1197 14 8 1.7080 -0.2518 -2.4496 15 6 2.2267 -0.9863 -3.5897 16 1 3.1794 -1.4442 -3.3240 17 6 1.2307 -2.0766 -3.9900 18 6 2.4287 -0.0414 -4.7462 19 6 3.4889 -0.2217 -5.6229 20 6 3.6371 0.6707 -6.6717 21 6 2.7278 1.7072 -6.8091 22 9 2.8628 2.5840 -7.8281 23 7 1.7343 1.8505 -5.9514 24 6 1.5616 1.0149 -4.9450 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7096 1.1616 3.4844 29 1 1.0846 -2.7599 -3.1534 30 1 0.2780 -1.6186 -4.2557 31 1 1.6203 -2.6282 -4.8456 32 1 4.1823 -1.0391 -5.4907 33 1 4.4511 0.5607 -7.3728 34 1 0.7347 1.1613 -4.2659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123006128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:06 Heat of formation + Delta-G solvation = -118.826611 kcal Electronic energy + Delta-G solvation = -19770.781772 eV Core-core repulsion = 16389.631984 eV Total energy + Delta-G solvation = -3381.149788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.09421 -41.75091 -40.89977 -37.74624 -35.90092 -34.66801 -33.20711 -32.46997 -30.36639 -27.26801 -25.91480 -25.24684 -24.63576 -22.62747 -21.35792 -19.17175 -18.78997 -18.38867 -17.84099 -17.66154 -17.16686 -16.90563 -16.57681 -15.70433 -15.48695 -15.02531 -14.90711 -14.61276 -14.23840 -14.13632 -13.97529 -13.86528 -13.38259 -13.07036 -12.90250 -12.73381 -12.58325 -12.32943 -12.25549 -12.03433 -11.73723 -11.10697 -11.04615 -11.00912 -10.75215 -10.51496 -9.99392 -8.18415 -6.31690 -0.25772 0.03836 1.43943 1.44638 1.47604 1.53233 1.84102 2.43357 2.47231 2.50903 3.12025 3.33202 3.55326 3.76737 3.83326 4.02914 4.12638 4.24643 4.35740 4.65190 4.71153 4.73956 4.76923 4.82788 4.92844 4.99754 5.07819 5.16649 5.41720 5.49764 5.53174 5.70984 5.91283 6.12750 6.52719 6.74859 7.06844 7.37330 8.87591 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.004012 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.832276 B = 6977.241076 C = 7218.805793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.478 3.522 13 O -0.537 6.537 14 O -0.356 6.356 15 C 0.123 3.877 16 H 0.092 0.908 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.027 4.027 20 C -0.176 4.176 21 C 0.285 3.715 22 F -0.119 7.119 23 N -0.543 5.543 24 C 0.152 3.848 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.267 0.733 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -2.533 -17.428 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.198 1.198 12 C 0.324 3.676 13 O -0.426 6.426 14 O -0.273 6.273 15 C 0.067 3.933 16 H 0.109 0.891 17 C -0.215 4.215 18 C -0.152 4.152 19 C -0.052 4.052 20 C -0.196 4.196 21 C 0.132 3.868 22 F -0.098 7.098 23 N -0.257 5.257 24 C -0.004 4.004 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.199 0.801 33 H 0.203 0.797 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.669 -1.975 -17.467 17.780 hybrid contribution 0.756 -0.658 0.868 1.326 sum 3.425 -2.633 -16.599 17.152 Atomic orbital electron populations 1.21556 0.94323 0.99964 1.01994 1.18675 0.95958 0.96063 0.86325 0.93420 1.21241 1.32610 1.13303 0.90456 0.92342 1.25629 0.94914 0.95631 1.01573 1.69961 1.36679 1.23400 1.24734 0.85553 0.78714 0.78728 0.78332 1.19938 1.20143 1.19775 1.24704 0.75823 0.82516 0.84606 1.90470 1.37394 1.27605 1.87115 1.86611 1.69867 1.55915 1.14943 1.21426 0.99712 0.90790 0.81328 0.89055 1.22163 0.99419 0.97101 1.02807 1.20702 0.98084 0.98520 0.97850 1.21709 0.94649 0.98173 0.90706 1.22092 1.01330 0.94462 1.01757 1.18608 0.93375 0.88658 0.86190 1.91609 1.94759 1.68098 1.55372 1.67030 1.22433 1.30741 1.05533 1.22478 0.98107 0.88281 0.91562 0.90680 0.93100 0.95077 0.92339 0.92873 0.90821 0.87999 0.80074 0.79684 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.90 71.98 0.64 -4.87 16 2 C 0.05 2.43 2.74 -12.28 -0.03 2.40 16 3 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 4 C -0.54 -29.86 8.37 25.60 0.21 -29.64 16 5 H 0.06 3.38 6.76 -2.91 -0.02 3.36 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -50.00 11.32 21.45 0.24 -49.76 16 8 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 C 0.48 21.18 7.22 71.24 0.51 21.69 16 13 O -0.54 -25.70 14.68 21.97 0.32 -25.38 16 14 O -0.36 -12.69 8.95 -51.38 -0.46 -13.15 16 15 C 0.12 3.31 2.79 29.85 0.08 3.40 16 16 H 0.09 2.55 7.08 -2.39 -0.02 2.53 16 17 C -0.16 -3.58 9.53 71.98 0.69 -2.89 16 18 C -0.15 -3.41 5.02 -19.77 -0.10 -3.50 16 19 C -0.03 -0.44 9.84 22.46 0.22 -0.22 16 20 C -0.18 -2.83 10.09 22.41 0.23 -2.60 16 21 C 0.28 6.62 8.41 84.74 0.71 7.33 16 22 F -0.12 -2.80 17.29 44.97 0.78 -2.03 16 23 N -0.54 -14.97 10.37 -196.91 -2.04 -17.02 16 24 C 0.15 3.91 10.51 84.65 0.89 4.80 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 26 H 0.05 1.99 8.11 -2.39 -0.02 1.97 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.17 4.37 7.63 -2.91 -0.02 4.35 16 Total: -1.00 -64.14 302.98 6.48 -57.66 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.11 Total: 6.94 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.50 Total: -2.44 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -1.80 Total: -66.78 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.14 Total: -38.53 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -64.14 6.48 -57.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123006128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.167 kcal (2) G-P(sol) polarization free energy of solvation -64.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds