Wall clock time and date at job start Mon Mar 30 2020 00:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00323 * 2 1 4 4 O 1.21667 * 119.99512 * 0.02562 * 3 2 1 5 5 C 1.46966 * 120.00141 * 179.97438 * 3 2 1 6 6 N 1.34560 * 125.96049 * 0.02562 * 5 3 2 7 7 N 1.28668 * 109.73565 * 179.70695 * 6 5 3 8 8 N 1.40152 * 108.86849 * 0.45934 * 7 6 5 9 9 H 0.97001 * 126.55985 * 179.81542 * 8 7 6 10 10 C 1.35342 * 106.88732 * 359.54610 * 8 7 6 11 11 N 1.38505 * 126.78395 * 180.28541 * 10 8 7 12 12 C 1.34774 * 120.00094 * 359.97438 * 11 10 8 13 13 O 1.21270 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99825 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47130 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47496 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99541 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99645 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47071 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46917 * 120.00153 * 20 18 16 23 23 H 1.48502 * 109.47142 * 240.00234 * 20 18 16 24 24 H 1.08999 * 109.47235 * 300.00538 * 1 2 3 25 25 H 1.09011 * 109.46816 * 60.00044 * 1 2 3 26 26 H 1.08996 * 109.47259 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99795 * 180.02562 * 2 1 3 28 28 H 0.97006 * 119.99981 * 179.97438 * 11 10 8 29 29 H 1.08999 * 109.47554 * 299.99735 * 14 12 11 30 30 H 1.08997 * 109.47518 * 60.00051 * 14 12 11 31 31 H 1.09003 * 109.47007 * 300.00193 * 15 14 12 32 32 H 1.08997 * 109.47045 * 59.99557 * 15 14 12 33 33 H 0.97003 * 119.99814 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5306 2.2208 0.0005 5 6 3.6086 1.1671 0.0006 6 7 4.3987 0.0780 0.0006 7 7 5.6342 0.4374 -0.0050 8 7 5.6989 1.8374 0.0015 9 1 6.5039 2.3786 0.0018 10 6 4.4234 2.2900 0.0011 11 7 4.0127 3.6127 0.0008 12 6 4.9275 4.6024 0.0014 13 8 6.1103 4.3348 0.0018 14 6 4.4806 6.0416 0.0017 15 6 5.7070 6.9565 0.0017 16 6 5.2601 8.3957 0.0026 17 1 4.2067 8.6341 0.0027 18 6 6.1961 9.4081 0.0034 19 7 7.4788 9.1179 0.0028 20 14 5.6421 11.1921 0.0038 21 1 4.1582 11.2496 0.0038 22 1 6.1634 11.8720 1.2167 23 1 6.1643 11.8729 -1.2083 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.9499 -0.8401 -0.0004 28 1 3.0666 3.8269 0.0002 29 1 3.8825 6.2366 -0.8884 30 1 3.8818 6.2360 0.8915 31 1 6.3055 6.7617 0.8917 32 1 6.3054 6.7620 -0.8882 33 1 8.1372 9.8302 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129598776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:56 Heat of formation + Delta-G solvation = 6.740343 kcal Electronic energy + Delta-G solvation = -19532.457871 eV Core-core repulsion = 16208.965788 eV Total energy + Delta-G solvation = -3323.492083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.42863 -39.88300 -39.44190 -35.57212 -34.67715 -33.79227 -32.94279 -31.37061 -30.22975 -27.24602 -26.05577 -23.78459 -23.22556 -21.92752 -20.88003 -20.22170 -18.94495 -17.40971 -17.29467 -16.43658 -16.38639 -15.94828 -15.66070 -15.41499 -14.86551 -14.54177 -14.17166 -13.94151 -13.10143 -12.93327 -12.55586 -12.47128 -12.33482 -11.67933 -11.64029 -11.42040 -11.05305 -10.70426 -10.51609 -10.49682 -10.20550 -10.14651 -9.67813 -9.42830 -9.26075 -8.64032 -8.46011 -6.09957 -4.15201 0.97337 1.51057 1.97302 2.56507 2.91967 3.07157 3.14930 3.25621 3.33574 3.36624 4.13252 4.36747 4.41796 4.75223 4.94352 5.00276 5.25173 5.26098 5.40239 5.54547 5.75117 5.88834 5.93855 6.11204 6.54754 6.87683 7.05239 7.17247 7.55526 7.60337 7.78983 7.85330 7.88044 7.97561 8.23582 8.91814 9.49830 11.00913 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.003775 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.542495 B = 7415.963452 C = 8289.756693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.721 5.721 3 C 0.615 3.385 4 O -0.548 6.548 5 C -0.159 4.159 6 N -0.186 5.186 7 N -0.063 5.063 8 N -0.458 5.458 9 H 0.461 0.539 10 C 0.383 3.617 11 N -0.637 5.637 12 C 0.516 3.484 13 O -0.517 6.517 14 C -0.127 4.127 15 C 0.035 3.965 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.411 0.589 28 H 0.442 0.558 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -17.306 -0.008 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.371 5.371 3 C 0.401 3.599 4 O -0.425 6.425 5 C -0.302 4.302 6 N -0.061 5.061 7 N -0.046 5.046 8 N -0.184 5.184 9 H 0.316 0.684 10 C 0.144 3.856 11 N -0.290 5.290 12 C 0.307 3.693 13 O -0.389 6.389 14 C -0.166 4.166 15 C -0.002 4.002 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.245 0.755 28 H 0.286 0.714 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.497 -17.861 -0.008 20.717 hybrid contribution -0.392 1.884 0.003 1.924 sum -10.888 -15.977 -0.005 19.335 Atomic orbital electron populations 1.21587 0.78858 1.02444 1.02619 1.45449 1.07787 1.08627 1.75271 1.16486 0.83808 0.84113 0.75510 1.90754 1.68684 1.31127 1.51925 1.20885 0.94920 0.87506 1.26936 1.74457 0.97844 1.25074 1.08745 1.81864 1.11543 0.86384 1.24796 1.48503 1.07332 1.08317 1.54264 0.68350 1.18956 0.85970 0.86950 0.93696 1.43901 1.13927 1.00313 1.70903 1.22470 0.85218 0.89098 0.72476 1.90499 1.17534 1.83806 1.47063 1.22022 1.04330 0.86196 1.04071 1.18980 0.90206 0.92119 0.98911 1.21184 0.93074 0.90670 1.51947 0.92233 1.25019 0.94869 0.99403 0.95006 1.69989 1.00200 1.32676 1.49837 0.86489 0.78856 0.84696 0.77672 1.19614 1.20940 1.20934 0.91915 0.91925 0.90447 0.75455 0.71362 0.88645 0.88641 0.95539 0.95537 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.72 -6.49 5.71 -68.32 -0.39 -6.88 16 3 C 0.61 7.62 7.80 -12.72 -0.10 7.52 16 4 O -0.55 -7.75 15.09 5.22 0.08 -7.67 16 5 C -0.16 -2.14 7.05 -82.95 -0.59 -2.73 16 6 N -0.19 -2.51 12.03 33.15 0.40 -2.11 16 7 N -0.06 -0.90 13.85 60.35 0.84 -0.07 16 8 N -0.46 -6.64 7.04 31.48 0.22 -6.42 16 9 H 0.46 6.71 6.56 -182.56 -1.20 5.52 16 10 C 0.38 5.53 7.77 -153.08 -1.19 4.34 16 11 N -0.64 -8.94 5.36 -11.07 -0.06 -9.00 16 12 C 0.52 8.67 7.79 -10.99 -0.09 8.58 16 13 O -0.52 -9.99 13.58 5.57 0.08 -9.92 16 14 C -0.13 -2.27 5.64 -27.88 -0.16 -2.43 16 15 C 0.04 0.87 4.26 -27.88 -0.12 0.75 16 16 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.41 3.05 8.51 -40.82 -0.35 2.70 16 28 H 0.44 5.57 6.85 -40.82 -0.28 5.29 16 29 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -31.73 297.26 -4.97 -36.70 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.32 Total: 6.15 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.01 Total: 4.33 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 1.74 Total: -49.95 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.15 Total: -17.59 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.73 -4.97 -36.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129598776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.439 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds