Wall clock time and date at job start Mon Mar 30 2020 00:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00323 * 2 1 4 4 O 1.21667 * 119.99512 * 0.02562 * 3 2 1 5 5 C 1.46966 * 120.00141 * 179.97438 * 3 2 1 6 6 N 1.34560 * 125.96049 * 0.02562 * 5 3 2 7 7 N 1.28668 * 109.73565 * 179.70695 * 6 5 3 8 8 N 1.40152 * 108.86849 * 0.45934 * 7 6 5 9 9 H 0.97001 * 126.55985 * 179.81542 * 8 7 6 10 10 C 1.35342 * 106.88732 * 359.54610 * 8 7 6 11 11 N 1.38505 * 126.78395 * 180.28541 * 10 8 7 12 12 C 1.34774 * 120.00094 * 359.97438 * 11 10 8 13 13 O 1.21270 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99825 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47130 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47496 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99541 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99645 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47071 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46917 * 120.00153 * 20 18 16 23 23 H 1.48502 * 109.47142 * 240.00234 * 20 18 16 24 24 H 1.08999 * 109.47235 * 300.00538 * 1 2 3 25 25 H 1.09011 * 109.46816 * 60.00044 * 1 2 3 26 26 H 1.08996 * 109.47259 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99795 * 180.02562 * 2 1 3 28 28 H 0.97006 * 119.99981 * 179.97438 * 11 10 8 29 29 H 1.08999 * 109.47554 * 299.99735 * 14 12 11 30 30 H 1.08997 * 109.47518 * 60.00051 * 14 12 11 31 31 H 1.09003 * 109.47007 * 300.00193 * 15 14 12 32 32 H 1.08997 * 109.47045 * 59.99557 * 15 14 12 33 33 H 0.97003 * 119.99814 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5306 2.2208 0.0005 5 6 3.6086 1.1671 0.0006 6 7 4.3987 0.0780 0.0006 7 7 5.6342 0.4374 -0.0050 8 7 5.6989 1.8374 0.0015 9 1 6.5039 2.3786 0.0018 10 6 4.4234 2.2900 0.0011 11 7 4.0127 3.6127 0.0008 12 6 4.9275 4.6024 0.0014 13 8 6.1103 4.3348 0.0018 14 6 4.4806 6.0416 0.0017 15 6 5.7070 6.9565 0.0017 16 6 5.2601 8.3957 0.0026 17 1 4.2067 8.6341 0.0027 18 6 6.1961 9.4081 0.0034 19 7 7.4788 9.1179 0.0028 20 14 5.6421 11.1921 0.0038 21 1 4.1582 11.2496 0.0038 22 1 6.1634 11.8720 1.2167 23 1 6.1643 11.8729 -1.2083 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.9499 -0.8401 -0.0004 28 1 3.0666 3.8269 0.0002 29 1 3.8825 6.2366 -0.8884 30 1 3.8818 6.2360 0.8915 31 1 6.3055 6.7617 0.8917 32 1 6.3054 6.7620 -0.8882 33 1 8.1372 9.8302 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129598776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:56 Heat of formation + Delta-G solvation = -18.507117 kcal Electronic energy + Delta-G solvation = -19533.552683 eV Core-core repulsion = 16208.965788 eV Total energy + Delta-G solvation = -3324.586895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.56447 -41.21985 -40.38103 -36.79442 -35.68069 -35.55534 -34.15180 -33.09274 -31.44652 -28.27285 -27.59177 -25.12351 -24.35975 -23.40036 -21.92295 -21.64535 -19.96903 -18.96032 -18.53607 -17.79296 -17.60456 -17.25085 -16.68238 -16.64275 -16.45368 -15.85307 -15.45170 -15.03854 -14.54715 -14.28204 -13.82082 -13.57154 -13.34105 -13.05736 -12.97435 -12.84754 -12.74718 -12.47591 -12.01668 -11.79588 -11.63313 -11.57738 -11.34736 -11.20143 -10.58338 -10.23619 -9.73927 -8.20190 -6.32777 -0.19945 0.43733 0.82743 1.27604 1.43649 1.44140 1.57100 1.75386 2.12703 2.16690 2.42457 3.05547 3.14608 3.45109 3.54556 3.73180 4.26028 4.36545 4.44038 4.51601 4.66621 4.72400 4.95287 5.03713 5.35558 5.48701 5.57685 5.70312 5.81801 5.86693 6.13742 6.35129 6.55402 6.75614 6.86556 7.07858 7.37707 8.92176 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.003775 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.542495 B = 7415.963452 C = 8289.756693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.707 5.707 3 C 0.609 3.391 4 O -0.567 6.567 5 C -0.149 4.149 6 N -0.180 5.180 7 N -0.072 5.072 8 N -0.459 5.459 9 H 0.460 0.540 10 C 0.366 3.634 11 N -0.619 5.619 12 C 0.523 3.477 13 O -0.548 6.548 14 C -0.116 4.116 15 C 0.039 3.961 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.253 1.253 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.419 0.581 28 H 0.451 0.549 29 H 0.120 0.880 30 H 0.120 0.880 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 -17.764 -0.009 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.357 5.357 3 C 0.394 3.606 4 O -0.446 6.446 5 C -0.293 4.293 6 N -0.055 5.055 7 N -0.055 5.055 8 N -0.184 5.184 9 H 0.315 0.685 10 C 0.128 3.872 11 N -0.273 5.273 12 C 0.315 3.685 13 O -0.423 6.423 14 C -0.155 4.155 15 C 0.002 3.998 16 C -0.579 4.579 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.177 1.177 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.131 0.869 27 H 0.256 0.744 28 H 0.297 0.703 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.100 -18.386 -0.008 22.576 hybrid contribution 0.361 1.891 0.003 1.925 sum -12.739 -16.495 -0.005 20.842 Atomic orbital electron populations 1.21817 0.77070 1.04743 1.02270 1.45482 1.08911 1.07934 1.73339 1.16470 0.83284 0.84853 0.75971 1.90741 1.68739 1.31977 1.53193 1.21156 0.95636 0.86960 1.25505 1.74451 0.97580 1.24906 1.08522 1.81875 1.11988 0.86289 1.25324 1.48522 1.07481 1.08391 1.54053 0.68539 1.19114 0.86169 0.87126 0.94781 1.43501 1.13754 0.99810 1.70225 1.22120 0.84930 0.89240 0.72223 1.90504 1.18893 1.84203 1.48697 1.21769 1.01596 0.85641 1.06506 1.18759 0.92179 0.93291 0.95613 1.21711 0.93933 0.91651 1.50653 0.90443 1.26039 0.94867 1.04509 0.94727 1.70147 1.01682 1.34170 1.51499 0.85339 0.79277 0.78634 0.77413 1.17668 1.20856 1.20848 0.92239 0.92247 0.86917 0.74438 0.70284 0.86178 0.86174 0.98982 0.98976 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.70 127.77 1.37 2.25 16 2 N -0.71 -11.01 5.71 -488.30 -2.79 -13.79 16 3 C 0.61 13.96 7.80 86.53 0.67 14.64 16 4 O -0.57 -15.04 15.09 -4.24 -0.06 -15.10 16 5 C -0.15 -3.80 7.05 41.13 0.29 -3.51 16 6 N -0.18 -4.63 12.03 -49.05 -0.59 -5.22 16 7 N -0.07 -2.02 13.85 37.02 0.51 -1.51 16 8 N -0.46 -13.24 7.04 -54.33 -0.38 -13.62 16 9 H 0.46 13.66 6.56 -213.29 -1.40 12.26 16 10 C 0.37 10.27 7.77 132.23 1.03 11.30 16 11 N -0.62 -16.70 5.36 -307.32 -1.65 -18.35 16 12 C 0.52 17.41 7.79 87.66 0.68 18.09 16 13 O -0.55 -21.71 13.58 -3.00 -0.04 -21.75 16 14 C -0.12 -4.04 5.64 29.85 0.17 -3.87 16 15 C 0.04 1.97 4.26 29.85 0.13 2.10 16 16 C -0.54 -28.82 9.11 25.60 0.23 -28.58 16 17 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 18 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 19 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 20 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 21 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.42 5.13 8.51 -92.71 -0.79 4.34 16 28 H 0.45 10.58 6.85 -92.70 -0.63 9.94 16 29 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 30 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 31 H -0.01 -0.47 8.10 -2.39 -0.02 -0.49 16 32 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -69.36 297.26 0.71 -68.64 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -1.63 Total: 19.61 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.03 Total: 12.68 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.61 Total: -108.77 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.10 Total: -36.85 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -69.36 0.71 -68.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129598776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.137 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds