Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47259 * 2 1 4 4 C 1.46496 * 119.99871 * 274.62264 * 3 2 1 5 5 C 1.50703 * 109.47246 * 269.99499 * 4 3 2 6 6 H 1.08002 * 119.99832 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00297 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99898 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00286 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47394 * 89.99645 * 9 7 5 11 11 H 1.48498 * 109.47395 * 210.00275 * 9 7 5 12 12 H 1.48500 * 109.46701 * 330.00141 * 9 7 5 13 13 C 1.34771 * 119.99977 * 94.61834 * 3 2 1 14 14 O 1.21571 * 120.00021 * 4.97833 * 13 3 2 15 15 C 1.47705 * 120.00183 * 184.97953 * 13 3 2 16 16 C 1.39710 * 120.13864 * 303.65310 * 15 13 3 17 17 C 1.37845 * 119.98355 * 179.97438 * 16 15 13 18 18 C 1.38416 * 120.26532 * 0.02647 * 17 16 15 19 19 C 1.38614 * 120.28975 * 359.97147 * 18 17 16 20 20 O 1.35964 * 119.99808 * 179.72908 * 19 18 17 21 21 C 1.38820 * 120.01165 * 0.02562 * 19 18 17 22 22 F 1.35101 * 120.13511 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.47156 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47077 * 299.99386 * 1 2 3 25 25 H 1.08996 * 109.47509 * 60.00093 * 1 2 3 26 26 H 1.09003 * 109.47077 * 240.00614 * 2 1 3 27 27 H 1.08996 * 109.47509 * 119.99907 * 2 1 3 28 28 H 1.08998 * 109.47660 * 29.99498 * 4 3 2 29 29 H 1.09001 * 109.47151 * 149.99798 * 4 3 2 30 30 H 0.97002 * 119.99566 * 180.02562 * 8 7 5 31 31 H 1.07999 * 120.01146 * 0.02562 * 16 15 13 32 32 H 1.07993 * 119.87151 * 180.02562 * 17 16 15 33 33 H 1.08006 * 119.85567 * 179.97438 * 18 17 16 34 34 H 0.96698 * 114.00264 * 90.00412 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1661 2.1059 -1.2646 5 6 3.5520 1.8824 -1.8127 6 1 4.2525 1.2622 -1.2732 7 6 3.9257 2.4696 -3.0028 8 7 3.0728 3.2253 -3.6595 9 14 5.6434 2.1920 -3.6825 10 1 5.6406 0.9947 -4.5609 11 1 6.0633 3.3807 -4.4673 12 1 6.5917 1.9799 -2.5596 13 6 2.3316 1.9853 1.1634 14 8 2.2957 1.3569 2.2034 15 6 2.7184 3.4107 1.1748 16 6 3.7871 3.8538 0.3916 17 6 4.1451 5.1849 0.4042 18 6 3.4499 6.0868 1.1911 19 6 2.3877 5.6594 1.9725 20 8 1.7125 6.5494 2.7474 21 6 2.0172 4.3215 1.9686 22 9 0.9826 3.9021 2.7296 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.4293 1.7417 -1.9804 29 1 2.0106 3.1711 -1.0933 30 1 3.3357 3.6381 -4.4970 31 1 4.3322 3.1538 -0.2243 32 1 4.9712 5.5255 -0.2022 33 1 3.7363 7.1282 1.1963 34 1 0.9614 6.9667 2.3038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136353497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -99.375375 kcal Electronic energy + Delta-G solvation = -20797.518962 eV Core-core repulsion = 17417.212644 eV Total energy + Delta-G solvation = -3380.306319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.52834 -39.71382 -38.57878 -36.31493 -35.29547 -32.92999 -31.28050 -29.87721 -29.16213 -27.20236 -24.17730 -23.19238 -22.36746 -21.90552 -19.25834 -17.93523 -17.12598 -16.60015 -16.43191 -16.15437 -15.75637 -15.19468 -14.67312 -14.48340 -14.16933 -14.05704 -13.44103 -13.21610 -12.93602 -12.51969 -12.08630 -12.00299 -11.94072 -11.59392 -11.42548 -11.15906 -11.03615 -10.84472 -10.67968 -10.50345 -10.19299 -9.86441 -9.25960 -8.72170 -8.50464 -8.28314 -7.81836 -6.30565 -4.38368 1.22437 1.42353 3.13730 3.21180 3.22481 3.26892 3.61641 3.97516 4.21648 4.26307 4.55546 5.00213 5.01893 5.30627 5.35441 5.61289 5.63096 5.77223 5.86012 5.96032 6.22333 6.23557 6.27572 6.39566 6.60829 6.67512 6.70569 6.74657 7.02510 7.11749 7.45098 7.63321 7.69539 7.93111 8.20103 8.65131 8.86980 9.27806 10.75282 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.008703 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.974101 B = 3216.445948 C = 4491.529248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.587 5.587 4 C 0.233 3.767 5 C -0.544 4.544 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.561 3.439 14 O -0.559 6.559 15 C -0.138 4.138 16 C -0.040 4.040 17 C -0.122 4.122 18 C -0.104 4.104 19 C 0.049 3.951 20 O -0.489 6.489 21 C 0.110 3.890 22 F -0.128 7.128 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.267 0.733 31 H 0.172 0.828 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 3.919 4.141 5.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.316 5.316 4 C 0.113 3.887 5 C -0.582 4.582 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.348 3.652 14 O -0.440 6.440 15 C -0.142 4.142 16 C -0.058 4.058 17 C -0.141 4.141 18 C -0.123 4.123 19 C 0.004 3.996 20 O -0.298 6.298 21 C 0.089 3.911 22 F -0.106 7.106 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.189 0.811 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.104 3.517 4.930 6.156 hybrid contribution 0.265 0.087 -0.924 0.966 sum -0.839 3.605 4.005 5.453 Atomic orbital electron populations 1.22117 0.96685 1.01386 1.02040 1.21294 0.93521 0.83366 1.02840 1.48172 1.62019 1.13682 1.07773 1.19531 0.97425 0.92589 0.79145 1.21460 0.98300 1.31570 1.06846 0.91741 1.24937 0.97634 0.94626 0.96269 1.69927 1.35017 1.30989 1.15965 0.86581 0.84059 0.78047 0.79417 1.20382 1.20905 1.19498 1.17980 0.77256 0.86069 0.83868 1.90711 1.54908 1.65828 1.32515 1.19926 0.99728 0.94193 1.00367 1.22141 0.93863 0.97091 0.92671 1.21069 1.00803 0.92970 0.99224 1.21378 0.95202 1.00703 0.94982 1.18140 0.96991 0.86818 0.97688 1.84884 1.47069 1.57547 1.40307 1.18057 0.87583 0.92166 0.93258 1.91490 1.55357 1.90623 1.73155 0.92188 0.92929 0.92410 0.90265 0.90604 0.94417 0.94136 0.92330 0.81095 0.84664 0.84733 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.11 2.09 6.21 -4.04 -0.03 2.07 16 3 N -0.59 -12.55 2.46 -176.23 -0.43 -12.98 16 4 C 0.23 5.35 4.73 -5.19 -0.02 5.32 16 5 C -0.54 -13.06 6.56 -34.44 -0.23 -13.28 16 6 H 0.06 1.57 7.76 -52.49 -0.41 1.17 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.88 -22.68 13.29 55.43 0.74 -21.95 16 9 Si 0.89 19.04 29.54 -169.99 -5.02 14.02 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.56 12.56 6.85 -12.40 -0.08 12.48 16 14 O -0.56 -13.66 16.44 5.30 0.09 -13.57 16 15 C -0.14 -2.84 4.63 -104.93 -0.49 -3.33 16 16 C -0.04 -0.76 7.79 -39.18 -0.31 -1.06 16 17 C -0.12 -1.95 10.02 -39.66 -0.40 -2.35 16 18 C -0.10 -1.52 9.97 -39.38 -0.39 -1.91 16 19 C 0.05 0.80 6.70 -39.23 -0.26 0.54 16 20 O -0.49 -6.93 13.37 -19.63 -0.26 -7.19 16 21 C 0.11 2.13 7.29 -38.82 -0.28 1.85 16 22 F -0.13 -2.61 16.56 2.25 0.04 -2.57 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 27 H 0.08 1.42 7.23 -51.93 -0.38 1.04 16 28 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 0.98 6.14 -51.93 -0.32 0.66 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.17 3.54 5.19 -52.49 -0.27 3.26 16 32 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.39 3.56 9.06 45.56 0.41 3.98 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -29.30 299.83 -5.59 -34.89 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.05 Total: 5.18 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.20 Total: -0.34 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.30 Total: -34.93 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.18 Total: -20.76 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.30 -5.59 -34.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136353497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.488 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds