Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47259 * 2 1 4 4 C 1.46496 * 119.99871 * 274.62264 * 3 2 1 5 5 C 1.50703 * 109.47246 * 269.99499 * 4 3 2 6 6 H 1.08002 * 119.99832 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00297 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99898 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00286 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47394 * 89.99645 * 9 7 5 11 11 H 1.48498 * 109.47395 * 210.00275 * 9 7 5 12 12 H 1.48500 * 109.46701 * 330.00141 * 9 7 5 13 13 C 1.34771 * 119.99977 * 94.61834 * 3 2 1 14 14 O 1.21571 * 120.00021 * 4.97833 * 13 3 2 15 15 C 1.47705 * 120.00183 * 184.97953 * 13 3 2 16 16 C 1.39710 * 120.13864 * 303.65310 * 15 13 3 17 17 C 1.37845 * 119.98355 * 179.97438 * 16 15 13 18 18 C 1.38416 * 120.26532 * 0.02647 * 17 16 15 19 19 C 1.38614 * 120.28975 * 359.97147 * 18 17 16 20 20 O 1.35964 * 119.99808 * 179.72908 * 19 18 17 21 21 C 1.38820 * 120.01165 * 0.02562 * 19 18 17 22 22 F 1.35101 * 120.13511 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.47156 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47077 * 299.99386 * 1 2 3 25 25 H 1.08996 * 109.47509 * 60.00093 * 1 2 3 26 26 H 1.09003 * 109.47077 * 240.00614 * 2 1 3 27 27 H 1.08996 * 109.47509 * 119.99907 * 2 1 3 28 28 H 1.08998 * 109.47660 * 29.99498 * 4 3 2 29 29 H 1.09001 * 109.47151 * 149.99798 * 4 3 2 30 30 H 0.97002 * 119.99566 * 180.02562 * 8 7 5 31 31 H 1.07999 * 120.01146 * 0.02562 * 16 15 13 32 32 H 1.07993 * 119.87151 * 180.02562 * 17 16 15 33 33 H 1.08006 * 119.85567 * 179.97438 * 18 17 16 34 34 H 0.96698 * 114.00264 * 90.00412 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1661 2.1059 -1.2646 5 6 3.5520 1.8824 -1.8127 6 1 4.2525 1.2622 -1.2732 7 6 3.9257 2.4696 -3.0028 8 7 3.0728 3.2253 -3.6595 9 14 5.6434 2.1920 -3.6825 10 1 5.6406 0.9947 -4.5609 11 1 6.0633 3.3807 -4.4673 12 1 6.5917 1.9799 -2.5596 13 6 2.3316 1.9853 1.1634 14 8 2.2957 1.3569 2.2034 15 6 2.7184 3.4107 1.1748 16 6 3.7871 3.8538 0.3916 17 6 4.1451 5.1849 0.4042 18 6 3.4499 6.0868 1.1911 19 6 2.3877 5.6594 1.9725 20 8 1.7125 6.5494 2.7474 21 6 2.0172 4.3215 1.9686 22 9 0.9826 3.9021 2.7296 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.4293 1.7417 -1.9804 29 1 2.0106 3.1711 -1.0933 30 1 3.3357 3.6381 -4.4970 31 1 4.3322 3.1538 -0.2243 32 1 4.9712 5.5255 -0.2022 33 1 3.7363 7.1282 1.1963 34 1 0.9614 6.9667 2.3038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136353497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -118.329442 kcal Electronic energy + Delta-G solvation = -20798.340872 eV Core-core repulsion = 17417.212644 eV Total energy + Delta-G solvation = -3381.128229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.02569 -41.27683 -39.98207 -37.59842 -37.04839 -34.75361 -32.76822 -31.32954 -30.51479 -29.03147 -25.63921 -25.02855 -23.73305 -23.33930 -20.73909 -19.38384 -18.69997 -18.28513 -17.99017 -17.70300 -17.27445 -16.71539 -16.30753 -16.01203 -15.71351 -15.41119 -14.92707 -14.62886 -14.48096 -14.28972 -13.65282 -13.50689 -13.40432 -13.15494 -12.89122 -12.71745 -12.57641 -12.56765 -12.12964 -11.91557 -11.84504 -11.69755 -10.94462 -10.58715 -9.93499 -9.63566 -9.56692 -8.18599 -6.32216 -0.16144 0.08772 1.44767 1.48855 1.55745 1.59758 2.11470 2.42011 2.55662 2.93815 3.11581 3.26713 3.52796 3.93669 4.04906 4.16434 4.32744 4.37190 4.49361 4.64388 4.75638 4.90614 4.92363 4.99838 5.03122 5.14311 5.27033 5.29188 5.40959 5.63964 5.73164 5.78709 6.04501 6.43224 6.68954 6.76591 7.12551 7.37637 8.87277 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.008703 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.974101 B = 3216.445948 C = 4491.529248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 N -0.588 5.588 4 C 0.250 3.750 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.035 3.965 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.554 3.446 14 O -0.590 6.590 15 C -0.163 4.163 16 C -0.058 4.058 17 C -0.114 4.114 18 C -0.085 4.085 19 C 0.064 3.936 20 O -0.491 6.491 21 C 0.081 3.919 22 F -0.142 7.142 23 H 0.093 0.907 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.023 0.977 29 H 0.028 0.972 30 H 0.269 0.731 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 5.446 3.786 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 N -0.317 5.317 4 C 0.130 3.870 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.167 4.167 8 N -0.548 5.548 9 Si 0.775 3.225 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.190 1.190 13 C 0.343 3.657 14 O -0.473 6.473 15 C -0.167 4.167 16 C -0.076 4.076 17 C -0.132 4.132 18 C -0.104 4.104 19 C 0.018 3.982 20 O -0.304 6.304 21 C 0.061 3.939 22 F -0.121 7.121 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.182 0.818 33 H 0.197 0.803 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.278 5.045 4.564 6.809 hybrid contribution -0.032 -0.331 -0.778 0.846 sum -0.310 4.714 3.787 6.054 Atomic orbital electron populations 1.22028 0.94617 1.03329 1.01151 1.21515 0.95266 0.82085 1.02906 1.48255 1.61737 1.14586 1.07149 1.19211 0.96661 0.91946 0.79222 1.21490 0.98428 1.31347 1.06936 0.92563 1.25522 1.00625 0.94244 0.96327 1.70013 1.36598 1.31837 1.16385 0.85677 0.80320 0.77803 0.78695 1.20654 1.20311 1.19018 1.18390 0.76736 0.87079 0.83522 1.90667 1.56475 1.66831 1.33322 1.19897 1.01212 0.93375 1.02229 1.21991 0.93951 0.98459 0.93183 1.21402 1.01143 0.91579 0.99045 1.21779 0.93344 1.02428 0.92806 1.18234 0.97135 0.85868 0.96942 1.84825 1.48107 1.56839 1.40603 1.18402 0.87990 0.93536 0.93993 1.91441 1.56029 1.90991 1.73617 0.88848 0.94248 0.92708 0.89625 0.90987 0.95930 0.95356 0.92149 0.83104 0.81833 0.80336 0.73023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.24 71.98 0.74 -4.18 16 2 C 0.10 3.94 6.21 86.38 0.54 4.48 16 3 N -0.59 -25.92 2.46 -829.73 -2.04 -27.96 16 4 C 0.25 11.75 4.73 85.63 0.41 12.16 16 5 C -0.54 -26.37 6.56 25.60 0.17 -26.20 16 6 H 0.06 2.78 7.76 -2.91 -0.02 2.76 16 7 C 0.03 1.68 5.46 84.65 0.46 2.14 16 8 N -0.91 -46.56 13.29 21.44 0.28 -46.27 16 9 Si 0.95 38.45 29.54 68.60 2.03 40.47 16 10 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 13 C 0.55 25.70 6.85 86.75 0.59 26.29 16 14 O -0.59 -29.92 16.44 -3.94 -0.06 -29.98 16 15 C -0.16 -6.84 4.63 -20.07 -0.09 -6.93 16 16 C -0.06 -2.19 7.79 22.53 0.18 -2.02 16 17 C -0.11 -3.35 10.02 22.22 0.22 -3.12 16 18 C -0.09 -2.18 9.97 22.40 0.22 -1.96 16 19 C 0.06 1.95 6.70 22.50 0.15 2.10 16 20 O -0.49 -12.45 13.37 -93.14 -1.24 -13.70 16 21 C 0.08 3.14 7.29 22.76 0.17 3.31 16 22 F -0.14 -5.91 16.56 44.97 0.74 -5.16 16 23 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 3.08 8.11 -2.39 -0.02 3.06 16 27 H 0.07 2.76 7.23 -2.39 -0.02 2.74 16 28 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 29 H 0.03 1.41 6.14 -2.39 -0.01 1.39 16 30 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 31 H 0.15 6.33 5.19 -2.91 -0.02 6.32 16 32 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.41 6.23 9.06 -74.06 -0.67 5.56 16 Total: -1.00 -63.73 299.83 3.92 -59.80 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.47 Total: 16.73 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 3.75 Total: 6.07 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -1.75 Total: -74.23 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.31 Total: -43.68 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.74 Total: -5.16 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.47 kcal Total: -63.73 3.92 -59.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136353497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.525 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds