Wall clock time and date at job start Mon Mar 30 2020 00:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.50701 * 109.46929 * 240.00137 * 2 1 3 5 5 H 1.07995 * 120.00346 * 239.99686 * 4 2 1 6 6 C 1.37877 * 120.00032 * 60.00006 * 4 2 1 7 7 N 1.31522 * 120.00036 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00431 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46807 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47210 * 119.99874 * 8 6 4 11 11 H 1.48504 * 109.47288 * 240.00388 * 8 6 4 12 12 N 1.46504 * 109.47241 * 120.00321 * 2 1 3 13 13 C 1.34776 * 119.99863 * 275.00001 * 12 2 1 14 14 O 1.21275 * 120.00235 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99670 * 180.02562 * 13 12 2 16 16 C 1.50696 * 109.46624 * 179.97438 * 15 13 12 17 17 C 1.38167 * 120.01516 * 264.97005 * 16 15 13 18 18 C 1.38441 * 120.03154 * 180.02562 * 17 16 15 19 19 F 1.35095 * 119.97035 * 179.97438 * 18 17 16 20 20 C 1.38471 * 120.05813 * 359.97438 * 18 17 16 21 21 C 1.38137 * 120.03207 * 359.74020 * 20 18 17 22 22 C 1.38697 * 120.01465 * 85.00095 * 16 15 13 23 23 O 1.35945 * 120.02798 * 359.94826 * 22 16 15 24 24 H 1.08999 * 109.47388 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47137 * 299.99317 * 1 2 3 26 26 H 1.09000 * 109.47201 * 59.99671 * 1 2 3 27 27 H 0.96991 * 120.00357 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99799 * 95.00093 * 12 2 1 29 29 H 1.08994 * 109.47439 * 59.99587 * 15 13 12 30 30 H 1.08997 * 109.46644 * 299.99334 * 15 13 12 31 31 H 1.07998 * 119.98492 * 0.02994 * 17 16 15 32 32 H 1.07998 * 119.98680 * 180.02562 * 20 18 17 33 33 H 1.07997 * 120.01692 * 180.27767 * 21 20 18 34 34 H 0.96701 * 113.99768 * 90.00817 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1482 -2.2855 -3.6040 10 1 1.1676 -1.5864 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0184 2.3571 14 8 1.8591 1.1584 2.4116 15 6 2.6500 -0.7288 3.5874 16 6 2.7011 0.2397 4.7409 17 6 3.8797 0.8954 5.0410 18 6 3.9272 1.7847 6.1009 19 9 5.0803 2.4248 6.3936 20 6 2.7938 2.0188 6.8613 21 6 1.6127 1.3690 6.5598 22 6 1.5654 0.4726 5.5021 23 8 0.4051 -0.1716 5.2075 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.7088 1.1616 -3.4843 28 1 2.2490 -1.6318 1.1525 29 1 3.6492 -1.1206 3.3978 30 1 1.9777 -1.5510 3.8324 31 1 4.7642 0.7141 4.4485 32 1 2.8321 2.7131 7.6876 33 1 0.7278 1.5551 7.1502 34 1 0.2976 -1.0169 5.6647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136736392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:46 Heat of formation + Delta-G solvation = -108.143160 kcal Electronic energy + Delta-G solvation = -19773.583433 eV Core-core repulsion = 16392.896914 eV Total energy + Delta-G solvation = -3380.686519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.90253 -40.09004 -38.46773 -36.50581 -34.78011 -32.81204 -32.28363 -29.78555 -29.02402 -27.08905 -25.22646 -22.92973 -22.33259 -20.83573 -19.37033 -18.46383 -17.43446 -16.91577 -16.85619 -15.89486 -15.52035 -15.30548 -15.18062 -14.50177 -14.28615 -14.01878 -13.67689 -13.19243 -12.99961 -12.84253 -12.35748 -11.94072 -11.78218 -11.72627 -11.50213 -11.07337 -10.92547 -10.69395 -10.51063 -10.27805 -10.22009 -9.25637 -9.01726 -8.85890 -8.53539 -8.43972 -7.86786 -6.10752 -4.20176 1.01304 1.10453 3.24192 3.31463 3.33659 3.35601 3.44821 4.07159 4.15038 4.24307 4.43451 4.58878 4.70582 4.97748 5.21254 5.24638 5.43448 5.48063 5.57653 5.78983 5.88276 6.02397 6.06762 6.35276 6.69120 6.86568 7.02131 7.19350 7.50406 7.58930 7.61073 7.71902 7.94688 8.17780 8.69934 8.80703 9.17720 9.47695 10.95256 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.004150 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.902416 B = 6744.806846 C = 7134.669150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.507 3.493 14 O -0.545 6.545 15 C -0.103 4.103 16 C -0.052 4.052 17 C -0.127 4.127 18 C 0.088 3.912 19 F -0.141 7.141 20 C -0.143 4.143 21 C -0.117 4.117 22 C 0.112 3.888 23 O -0.485 6.485 24 H 0.025 0.975 25 H 0.015 0.985 26 H 0.089 0.911 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -4.520 17.879 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.359 5.359 13 C 0.291 3.709 14 O -0.423 6.423 15 C -0.143 4.143 16 C -0.053 4.053 17 C -0.146 4.146 18 C 0.069 3.931 19 F -0.120 7.120 20 C -0.162 4.162 21 C -0.136 4.136 22 C 0.067 3.933 23 O -0.294 6.294 24 H 0.045 0.955 25 H 0.034 0.966 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.739 -3.028 17.379 17.853 hybrid contribution 0.628 -1.150 -0.607 1.444 sum 3.367 -4.179 16.772 17.610 Atomic orbital electron populations 1.22061 0.98466 0.99036 1.00895 1.18729 0.91050 0.93940 0.79996 0.93491 1.21263 1.32343 1.13172 0.90352 0.92044 1.24901 0.94840 0.94958 0.99074 1.69921 1.35947 1.22464 1.23745 0.86398 0.78594 0.79503 0.82609 1.19748 1.20878 1.20894 1.46490 1.65446 1.13461 1.10480 1.20093 0.78968 0.87581 0.84291 1.90683 1.50651 1.16051 1.84912 1.20631 1.03793 0.97778 0.92116 1.19545 0.91998 0.97801 0.95939 1.20902 0.99271 0.97259 0.97162 1.17589 0.82376 0.95824 0.97293 1.91487 1.47425 1.80141 1.92928 1.20940 0.91698 1.02284 1.01281 1.21193 0.97828 0.97435 0.97124 1.18245 0.85056 0.95874 0.94097 1.84979 1.36044 1.37824 1.70588 0.95544 0.96576 0.89262 0.92645 0.78015 0.88288 0.88156 0.84377 0.84554 0.84486 0.75930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.71 -14.78 5.07 -54.93 -0.28 -15.06 16 13 C 0.51 10.12 7.79 -10.98 -0.09 10.04 16 14 O -0.54 -13.49 15.70 5.56 0.09 -13.40 16 15 C -0.10 -1.41 5.55 -29.03 -0.16 -1.57 16 16 C -0.05 -0.73 4.39 -104.48 -0.46 -1.19 16 17 C -0.13 -1.73 9.66 -39.53 -0.38 -2.11 16 18 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 19 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 20 C -0.14 -1.64 10.02 -39.53 -0.40 -2.04 16 21 C -0.12 -1.36 9.99 -39.44 -0.39 -1.76 16 22 C 0.11 1.50 6.68 -39.23 -0.26 1.24 16 23 O -0.48 -6.13 12.64 -19.57 -0.25 -6.37 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.39 6.80 8.54 -40.82 -0.35 6.45 16 29 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 30 H 0.10 1.10 7.69 -51.93 -0.40 0.70 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.39 2.57 9.06 45.56 0.41 2.98 16 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -33.94 303.56 -5.99 -39.93 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.12 Total: 7.12 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.65 Total: -6.05 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.35 Total: -39.63 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.16 Total: -19.77 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.94 -5.99 -39.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.210 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds