Wall clock time and date at job start Mon Mar 30 2020 00:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.50701 * 109.46929 * 240.00137 * 2 1 3 5 5 H 1.07995 * 120.00346 * 239.99686 * 4 2 1 6 6 C 1.37877 * 120.00032 * 60.00006 * 4 2 1 7 7 N 1.31522 * 120.00036 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00431 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46807 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47210 * 119.99874 * 8 6 4 11 11 H 1.48504 * 109.47288 * 240.00388 * 8 6 4 12 12 N 1.46504 * 109.47241 * 120.00321 * 2 1 3 13 13 C 1.34776 * 119.99863 * 275.00001 * 12 2 1 14 14 O 1.21275 * 120.00235 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99670 * 180.02562 * 13 12 2 16 16 C 1.50696 * 109.46624 * 179.97438 * 15 13 12 17 17 C 1.38167 * 120.01516 * 264.97005 * 16 15 13 18 18 C 1.38441 * 120.03154 * 180.02562 * 17 16 15 19 19 F 1.35095 * 119.97035 * 179.97438 * 18 17 16 20 20 C 1.38471 * 120.05813 * 359.97438 * 18 17 16 21 21 C 1.38137 * 120.03207 * 359.74020 * 20 18 17 22 22 C 1.38697 * 120.01465 * 85.00095 * 16 15 13 23 23 O 1.35945 * 120.02798 * 359.94826 * 22 16 15 24 24 H 1.08999 * 109.47388 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47137 * 299.99317 * 1 2 3 26 26 H 1.09000 * 109.47201 * 59.99671 * 1 2 3 27 27 H 0.96991 * 120.00357 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99799 * 95.00093 * 12 2 1 29 29 H 1.08994 * 109.47439 * 59.99587 * 15 13 12 30 30 H 1.08997 * 109.46644 * 299.99334 * 15 13 12 31 31 H 1.07998 * 119.98492 * 0.02994 * 17 16 15 32 32 H 1.07998 * 119.98680 * 180.02562 * 20 18 17 33 33 H 1.07997 * 120.01692 * 180.27767 * 21 20 18 34 34 H 0.96701 * 113.99768 * 90.00817 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1482 -2.2855 -3.6040 10 1 1.1676 -1.5864 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0184 2.3571 14 8 1.8591 1.1584 2.4116 15 6 2.6500 -0.7288 3.5874 16 6 2.7011 0.2397 4.7409 17 6 3.8797 0.8954 5.0410 18 6 3.9272 1.7847 6.1009 19 9 5.0803 2.4248 6.3936 20 6 2.7938 2.0188 6.8613 21 6 1.6127 1.3690 6.5598 22 6 1.5654 0.4726 5.5021 23 8 0.4051 -0.1716 5.2075 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.7088 1.1616 -3.4843 28 1 2.2490 -1.6318 1.1525 29 1 3.6492 -1.1206 3.3978 30 1 1.9777 -1.5510 3.8324 31 1 4.7642 0.7141 4.4485 32 1 2.8321 2.7131 7.6876 33 1 0.7278 1.5551 7.1502 34 1 0.2976 -1.0169 5.6647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136736392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:46 Heat of formation + Delta-G solvation = -133.122462 kcal Electronic energy + Delta-G solvation = -19774.666616 eV Core-core repulsion = 16392.896914 eV Total energy + Delta-G solvation = -3381.769702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.89942 -41.21331 -39.96371 -37.44767 -36.68724 -34.33531 -33.81607 -31.17854 -30.42287 -28.31440 -27.32722 -23.98861 -23.59383 -22.40128 -21.09459 -19.39390 -18.99225 -18.14478 -17.85221 -17.49422 -17.08109 -16.64208 -16.29626 -16.02188 -15.81276 -15.11203 -14.72689 -14.70942 -14.42075 -14.14943 -13.93759 -13.62666 -13.06277 -12.95681 -12.80234 -12.75404 -12.66947 -12.57330 -12.26989 -12.10538 -11.44572 -11.08506 -10.78868 -10.58741 -9.98553 -9.71088 -9.41928 -8.16948 -6.34835 0.05128 0.15233 1.44971 1.45778 1.58072 1.89880 2.29717 2.42630 2.84581 3.13558 3.22343 3.23743 3.59102 3.78054 4.07059 4.21557 4.29685 4.46688 4.55500 4.75334 4.86663 4.92567 4.94848 5.09580 5.11213 5.12957 5.38342 5.44975 5.63153 5.70638 5.79232 5.92847 6.11080 6.74388 6.89394 7.01873 7.33806 7.63107 8.89732 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.004150 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.902416 B = 6744.806846 C = 7134.669150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.270 3.730 3 H -0.007 1.007 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.706 5.706 13 C 0.501 3.499 14 O -0.598 6.598 15 C -0.088 4.088 16 C -0.076 4.076 17 C -0.137 4.137 18 C 0.069 3.931 19 F -0.146 7.146 20 C -0.135 4.135 21 C -0.120 4.120 22 C 0.106 3.894 23 O -0.502 6.502 24 H 0.042 0.958 25 H 0.008 0.992 26 H 0.064 0.936 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -6.429 18.781 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.167 3.833 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.356 5.356 13 C 0.288 3.712 14 O -0.480 6.480 15 C -0.127 4.127 16 C -0.077 4.077 17 C -0.156 4.156 18 C 0.050 3.950 19 F -0.125 7.125 20 C -0.154 4.154 21 C -0.138 4.138 22 C 0.061 3.939 23 O -0.316 6.316 24 H 0.061 0.939 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.242 0.758 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.189 -5.003 18.320 19.257 hybrid contribution 0.454 -0.511 -0.813 1.062 sum 3.643 -5.514 17.507 18.712 Atomic orbital electron populations 1.21870 0.98471 0.99410 0.99247 1.18301 0.91016 0.91770 0.82256 0.98913 1.21597 1.32430 1.13519 0.90711 0.90582 1.25847 0.94889 0.95579 1.02483 1.70077 1.37190 1.24080 1.24516 0.85265 0.78073 0.78517 0.78267 1.18099 1.20445 1.21126 1.46234 1.65496 1.14259 1.09598 1.21175 0.77442 0.87104 0.85434 1.90656 1.52763 1.18720 1.85853 1.20587 1.05833 0.97775 0.88511 1.19659 0.92573 0.98880 0.96605 1.21071 0.99610 0.97441 0.97512 1.17808 0.82865 0.96382 0.97972 1.91470 1.47768 1.80271 1.92996 1.21269 0.90948 1.01878 1.01310 1.21493 0.98751 0.96668 0.96925 1.18484 0.84929 0.96163 0.94314 1.84911 1.35688 1.39521 1.71441 0.93924 0.97314 0.91753 0.92617 0.75809 0.85265 0.84897 0.83869 0.81939 0.82007 0.73042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.25 2.56 44.24 0.11 14.37 16 3 H -0.01 -0.44 7.58 -2.39 -0.02 -0.46 16 4 C -0.54 -28.88 8.73 25.60 0.22 -28.66 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 9 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.71 -28.99 5.07 -446.10 -2.26 -31.25 16 13 C 0.50 19.81 7.79 87.66 0.68 20.49 16 14 O -0.60 -30.33 15.70 -3.01 -0.05 -30.37 16 15 C -0.09 -2.21 5.55 29.10 0.16 -2.05 16 16 C -0.08 -2.03 4.39 -19.77 -0.09 -2.12 16 17 C -0.14 -3.63 9.66 22.30 0.22 -3.41 16 18 C 0.07 1.74 7.30 22.37 0.16 1.91 16 19 F -0.15 -3.81 17.27 44.97 0.78 -3.03 16 20 C -0.14 -2.86 10.02 22.30 0.22 -2.63 16 21 C -0.12 -2.54 9.99 22.36 0.22 -2.32 16 22 C 0.11 2.66 6.68 22.50 0.15 2.81 16 23 O -0.50 -11.69 12.64 -92.93 -1.17 -12.87 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.41 13.49 8.54 -92.71 -0.79 12.69 16 29 H 0.13 2.47 8.05 -2.39 -0.02 2.45 16 30 H 0.13 2.47 7.69 -2.39 -0.02 2.45 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 33 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.41 4.40 9.06 -74.06 -0.67 3.72 16 Total: -1.00 -75.58 303.56 2.43 -73.15 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.31 Total: 20.37 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 3.19 Total: -6.70 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.02 Total: -84.60 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.22 Total: -43.24 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -75.58 2.43 -73.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.971 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds