Wall clock time and date at job start Mon Mar 30 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 C 1.50699 * 109.46705 * 180.02562 * 15 13 12 17 17 C 1.38171 * 120.01340 * 264.72210 * 16 15 13 18 18 C 1.38432 * 120.03299 * 179.79345 * 17 16 15 19 19 F 1.35105 * 119.97499 * 180.25352 * 18 17 16 20 20 C 1.38481 * 120.05734 * 0.46060 * 18 17 16 21 21 C 1.38126 * 120.03073 * 359.79686 * 20 18 17 22 22 C 1.38682 * 120.01896 * 85.00160 * 16 15 13 23 23 O 1.35946 * 120.02940 * 359.97438 * 22 16 15 24 24 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 25 25 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 26 26 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 27 27 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 28 28 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 29 29 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 30 30 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 31 31 H 1.08007 * 119.98697 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.98537 * 179.76558 * 20 18 17 33 33 H 1.07992 * 120.01537 * 179.97438 * 21 20 18 34 34 H 0.96700 * 113.99787 * 90.00111 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 6 2.7004 0.2396 -4.7411 17 6 1.6424 0.3168 -5.6264 18 6 1.6874 1.2093 -6.6836 19 9 0.6500 1.2875 -7.5456 20 6 2.7966 2.0192 -6.8610 21 6 3.8580 1.9403 -5.9805 22 6 3.8121 1.0496 -4.9179 23 8 4.8560 0.9710 -4.0506 24 1 -0.3634 -1.0269 -0.0392 25 1 -0.3633 0.4796 0.9088 26 1 -0.3633 0.5473 -0.8698 27 1 0.9967 1.3391 3.4805 28 1 2.2491 -1.6318 -1.1525 29 1 3.6482 -1.1214 -3.3984 30 1 1.9761 -1.5507 -3.8325 31 1 0.7782 -0.3168 -5.4914 32 1 2.8321 2.7124 -7.6884 33 1 4.7231 2.5716 -6.1193 34 1 5.5307 0.3266 -4.3046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136736393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:49 Heat of formation + Delta-G solvation = -109.020067 kcal Electronic energy + Delta-G solvation = -19764.865171 eV Core-core repulsion = 16384.140627 eV Total energy + Delta-G solvation = -3380.724544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.90527 -40.08558 -38.46682 -36.49363 -34.77108 -32.81097 -32.27008 -29.80028 -29.07307 -27.11103 -25.20725 -22.93468 -22.33399 -20.85832 -19.37932 -18.45392 -17.43699 -16.90915 -16.85323 -15.88745 -15.51935 -15.28896 -15.17589 -14.51163 -14.30684 -13.94415 -13.69235 -13.30180 -13.00216 -12.70671 -12.35060 -12.02670 -11.80248 -11.71918 -11.54113 -11.04528 -10.94244 -10.73702 -10.50725 -10.31642 -10.25824 -9.25051 -9.07913 -8.85007 -8.49717 -8.43443 -7.88561 -6.12151 -4.18641 1.01671 1.10436 3.25212 3.31815 3.33667 3.35786 3.44793 4.08200 4.15568 4.24531 4.43591 4.58862 4.70467 4.97639 5.21318 5.24774 5.42347 5.48944 5.57508 5.78956 5.88599 6.02241 6.06760 6.35609 6.69226 6.79605 6.93014 7.12340 7.47647 7.58271 7.62874 7.70129 7.89676 8.10583 8.70249 8.81744 9.17762 9.47989 10.96038 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034903 B = 0.004115 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.038208 B = 6802.389708 C = 7154.078674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.710 5.710 13 C 0.507 3.493 14 O -0.544 6.544 15 C -0.103 4.103 16 C -0.052 4.052 17 C -0.128 4.128 18 C 0.088 3.912 19 F -0.141 7.141 20 C -0.143 4.143 21 C -0.117 4.117 22 C 0.113 3.887 23 O -0.484 6.484 24 H 0.027 0.973 25 H 0.076 0.924 26 H 0.017 0.983 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 -4.159 -17.289 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.359 5.359 13 C 0.291 3.709 14 O -0.422 6.422 15 C -0.143 4.143 16 C -0.053 4.053 17 C -0.146 4.146 18 C 0.069 3.931 19 F -0.120 7.120 20 C -0.162 4.162 21 C -0.136 4.136 22 C 0.068 3.932 23 O -0.294 6.294 24 H 0.046 0.954 25 H 0.095 0.905 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.578 -2.724 -16.866 17.687 hybrid contribution 0.337 -1.248 0.581 1.417 sum 4.916 -3.971 -16.285 17.469 Atomic orbital electron populations 1.22013 0.98856 0.98658 1.00574 1.18728 0.90592 0.94431 0.80075 0.92947 1.21200 1.35377 1.10377 0.90360 0.92064 1.24896 0.94994 0.94702 0.99033 1.69974 1.42092 1.15833 1.23989 0.86479 0.78613 0.79824 0.82444 1.20588 1.19823 1.21121 1.46473 1.65474 1.13457 1.10461 1.20096 0.78924 0.87546 0.84361 1.90686 1.50657 1.15902 1.84989 1.20631 1.04015 0.97526 0.92138 1.19541 0.93830 0.96835 0.95094 1.20888 0.99443 1.00020 0.94294 1.17588 0.85825 0.99202 0.90521 1.91488 1.56552 1.95538 1.68433 1.20941 0.93092 1.00628 1.01515 1.21205 0.99441 0.99404 0.93546 1.18254 0.89170 0.95905 0.89855 1.84988 1.32609 1.63890 1.47897 0.95352 0.90473 0.96346 0.92596 0.78029 0.88090 0.88346 0.84436 0.84556 0.84465 0.75889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.32 37.16 0.35 -3.20 16 2 C 0.26 6.79 2.45 -69.08 -0.17 6.63 16 3 H 0.05 1.59 7.57 -51.93 -0.39 1.20 16 4 C -0.53 -14.26 8.69 -34.44 -0.30 -14.56 16 5 H 0.06 1.55 7.73 -52.49 -0.41 1.14 16 6 C 0.07 1.83 5.21 -17.82 -0.09 1.74 16 7 N -0.88 -25.34 11.92 55.43 0.66 -24.68 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16 13 C 0.51 10.11 7.79 -10.98 -0.09 10.02 16 14 O -0.54 -13.47 15.70 5.56 0.09 -13.39 16 15 C -0.10 -1.41 5.55 -29.03 -0.16 -1.57 16 16 C -0.05 -0.73 4.38 -104.48 -0.46 -1.19 16 17 C -0.13 -1.72 9.65 -39.53 -0.38 -2.10 16 18 C 0.09 1.15 7.30 -39.42 -0.29 0.86 16 19 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 20 C -0.14 -1.64 10.02 -39.53 -0.40 -2.04 16 21 C -0.12 -1.37 9.99 -39.44 -0.39 -1.77 16 22 C 0.11 1.53 6.68 -39.23 -0.26 1.27 16 23 O -0.48 -6.29 12.64 -19.57 -0.25 -6.54 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 2.08 6.60 -51.93 -0.34 1.74 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.39 6.76 8.53 -40.82 -0.35 6.41 16 29 H 0.10 1.13 7.69 -51.93 -0.40 0.73 16 30 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.39 2.70 9.06 45.56 0.41 3.11 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -34.10 304.48 -5.96 -40.05 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.14 Total: 7.04 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.64 Total: -5.91 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.38 Total: -39.69 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.16 Total: -19.92 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.10 -5.96 -40.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.966 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds