Wall clock time and date at job start Mon Mar 30 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 C 1.50699 * 109.46705 * 180.02562 * 15 13 12 17 17 C 1.38171 * 120.01340 * 264.72210 * 16 15 13 18 18 C 1.38432 * 120.03299 * 179.79345 * 17 16 15 19 19 F 1.35105 * 119.97499 * 180.25352 * 18 17 16 20 20 C 1.38481 * 120.05734 * 0.46060 * 18 17 16 21 21 C 1.38126 * 120.03073 * 359.79686 * 20 18 17 22 22 C 1.38682 * 120.01896 * 85.00160 * 16 15 13 23 23 O 1.35946 * 120.02940 * 359.97438 * 22 16 15 24 24 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 25 25 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 26 26 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 27 27 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 28 28 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 29 29 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 30 30 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 31 31 H 1.08007 * 119.98697 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.98537 * 179.76558 * 20 18 17 33 33 H 1.07992 * 120.01537 * 179.97438 * 21 20 18 34 34 H 0.96700 * 113.99787 * 90.00111 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 6 2.7004 0.2396 -4.7411 17 6 1.6424 0.3168 -5.6264 18 6 1.6874 1.2093 -6.6836 19 9 0.6500 1.2875 -7.5456 20 6 2.7966 2.0192 -6.8610 21 6 3.8580 1.9403 -5.9805 22 6 3.8121 1.0496 -4.9179 23 8 4.8560 0.9710 -4.0506 24 1 -0.3634 -1.0269 -0.0392 25 1 -0.3633 0.4796 0.9088 26 1 -0.3633 0.5473 -0.8698 27 1 0.9967 1.3391 3.4805 28 1 2.2491 -1.6318 -1.1525 29 1 3.6482 -1.1214 -3.3984 30 1 1.9761 -1.5507 -3.8325 31 1 0.7782 -0.3168 -5.4914 32 1 2.8321 2.7124 -7.6884 33 1 4.7231 2.5716 -6.1193 34 1 5.5307 0.3266 -4.3046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136736393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:49 Heat of formation + Delta-G solvation = -134.225857 kcal Electronic energy + Delta-G solvation = -19765.958176 eV Core-core repulsion = 16384.140627 eV Total energy + Delta-G solvation = -3381.817549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.89404 -41.21170 -39.96259 -37.45131 -36.66983 -34.32593 -33.81689 -31.22627 -30.43399 -28.32465 -27.29820 -24.00516 -23.58966 -22.41277 -21.09492 -19.40195 -18.98553 -18.14491 -17.83845 -17.48934 -17.07325 -16.63743 -16.29030 -15.98025 -15.86281 -15.05656 -14.80839 -14.68461 -14.43282 -14.10604 -13.82258 -13.80012 -13.11436 -12.93293 -12.78953 -12.73909 -12.69301 -12.55683 -12.32398 -12.12134 -11.44571 -11.13088 -10.76112 -10.56435 -9.98605 -9.71511 -9.41922 -8.18858 -6.33719 0.05220 0.15346 1.45593 1.46111 1.57271 1.90176 2.30190 2.42994 2.84659 3.13298 3.22284 3.23963 3.59266 3.78168 4.07277 4.21502 4.30081 4.46780 4.55896 4.73269 4.85480 4.89932 4.93722 5.05769 5.09627 5.12911 5.38570 5.44571 5.62989 5.65377 5.79339 5.92777 6.06182 6.75660 6.89157 7.02174 7.34104 7.63628 8.90147 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034903 B = 0.004115 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.038208 B = 6802.389708 C = 7154.078674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.259 1.259 11 H -0.289 1.289 12 N -0.706 5.706 13 C 0.501 3.499 14 O -0.598 6.598 15 C -0.088 4.088 16 C -0.076 4.076 17 C -0.136 4.136 18 C 0.069 3.931 19 F -0.146 7.146 20 C -0.136 4.136 21 C -0.121 4.121 22 C 0.104 3.896 23 O -0.504 6.504 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.012 0.988 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -5.999 -17.998 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.183 1.183 11 H -0.215 1.215 12 N -0.356 5.356 13 C 0.288 3.712 14 O -0.480 6.480 15 C -0.127 4.127 16 C -0.077 4.077 17 C -0.155 4.155 18 C 0.050 3.950 19 F -0.125 7.125 20 C -0.154 4.154 21 C -0.139 4.139 22 C 0.059 3.941 23 O -0.317 6.317 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.242 0.758 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.164 0.836 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 5.739 -4.628 -17.610 19.091 hybrid contribution 0.025 -0.611 0.738 0.958 sum 5.764 -5.239 -16.872 18.583 Atomic orbital electron populations 1.21830 0.98517 0.99408 0.98971 1.18297 0.90842 0.92031 0.82284 0.98717 1.21557 1.35347 1.10725 0.90746 0.90548 1.25844 0.94826 0.95506 1.02501 1.70134 1.43426 1.17695 1.24714 0.85335 0.78812 0.78248 0.77955 1.19795 1.18311 1.21470 1.46222 1.65518 1.14259 1.09564 1.21179 0.77396 0.87069 0.85519 1.90660 1.52779 1.18608 1.85942 1.20590 1.06058 0.97550 0.88500 1.19658 0.94485 0.97943 0.95622 1.21068 0.99632 1.00335 0.94433 1.17803 0.86398 0.99986 0.90797 1.91474 1.56829 1.95624 1.68527 1.21268 0.92162 1.00104 1.01890 1.21489 1.00303 0.99153 0.92962 1.18517 0.89332 0.96056 0.90159 1.84921 1.33245 1.65111 1.48423 0.93274 0.93042 0.96856 0.92640 0.75794 0.85152 0.84957 0.83627 0.81955 0.82115 0.73075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 9.32 71.98 0.67 -5.86 16 2 C 0.27 14.15 2.45 44.25 0.11 14.26 16 3 H -0.01 -0.33 7.57 -2.39 -0.02 -0.34 16 4 C -0.55 -28.95 8.69 25.60 0.22 -28.73 16 5 H 0.08 3.73 7.73 -2.91 -0.02 3.71 16 6 C 0.01 0.71 5.21 84.65 0.44 1.16 16 7 N -0.92 -54.22 11.92 21.45 0.26 -53.96 16 8 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.71 -28.85 5.07 -446.09 -2.26 -31.11 16 13 C 0.50 19.77 7.79 87.66 0.68 20.45 16 14 O -0.60 -30.35 15.70 -3.03 -0.05 -30.40 16 15 C -0.09 -2.20 5.55 29.10 0.16 -2.04 16 16 C -0.08 -2.03 4.38 -19.77 -0.09 -2.12 16 17 C -0.14 -3.51 9.65 22.30 0.22 -3.30 16 18 C 0.07 1.73 7.30 22.37 0.16 1.90 16 19 F -0.15 -3.72 17.27 44.97 0.78 -2.95 16 20 C -0.14 -2.87 10.02 22.30 0.22 -2.64 16 21 C -0.12 -2.60 9.99 22.36 0.22 -2.38 16 22 C 0.10 2.67 6.68 22.49 0.15 2.82 16 23 O -0.50 -12.28 12.64 -92.94 -1.17 -13.46 16 24 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 2.86 6.60 -2.39 -0.02 2.84 16 26 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.41 13.37 8.53 -92.70 -0.79 12.58 16 29 H 0.13 2.49 7.69 -2.39 -0.02 2.48 16 30 H 0.13 2.42 8.05 -2.39 -0.02 2.40 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.41 4.84 9.06 -74.06 -0.67 4.17 16 Total: -1.00 -76.15 304.48 2.44 -73.72 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.31 Total: 20.59 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.18 Total: -6.48 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.01 Total: -85.07 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.22 Total: -43.85 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -76.15 2.44 -73.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.509 kcal (2) G-P(sol) polarization free energy of solvation -76.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds