Wall clock time and date at job start Mon Mar 30 2020 01:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50698 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.33387 * 125.20322 * 89.71551 * 4 3 2 6 6 C 1.38423 * 114.92109 * 179.86195 * 5 4 3 7 7 C 1.33387 * 114.92047 * 0.43373 * 6 5 4 8 8 C 1.50706 * 125.20195 * 179.79335 * 7 6 5 9 9 N 1.46898 * 109.47221 * 90.00066 * 8 7 6 10 10 C 1.47480 * 111.00052 * 265.97106 * 9 8 7 11 11 C 1.53516 * 87.93168 * 221.29931 * 10 9 8 12 12 C 1.50695 * 114.34419 * 139.68243 * 11 10 9 13 13 H 1.07997 * 120.00289 * 266.07127 * 12 11 10 14 14 C 1.37885 * 120.00022 * 86.07529 * 12 11 10 15 15 N 1.31512 * 120.00073 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99700 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46899 * 90.00468 * 16 14 12 18 18 H 1.48501 * 109.46848 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47348 * 329.99899 * 16 14 12 20 20 C 1.47481 * 110.99797 * 169.99839 * 9 8 7 21 21 S 1.75881 * 109.59382 * 359.77073 * 7 6 5 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 24 24 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 25 25 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 26 26 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 27 27 H 1.08004 * 122.53797 * 0.02562 * 5 4 3 28 28 H 1.08001 * 122.54224 * 180.20324 * 6 5 4 29 29 H 1.09003 * 109.46710 * 209.99682 * 8 7 6 30 30 H 1.08998 * 109.46911 * 329.99809 * 8 7 6 31 31 H 1.09005 * 113.47263 * 336.06235 * 10 9 8 32 32 H 1.08999 * 113.48126 * 106.52851 * 10 9 8 33 33 H 1.09002 * 114.16317 * 272.37508 * 11 10 9 34 34 H 0.97000 * 119.99945 * 180.02562 * 15 14 12 35 35 H 1.08998 * 113.47650 * 253.46675 * 20 9 8 36 36 H 1.09000 * 113.47874 * 23.87849 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2782 1.1207 -1.0909 6 6 5.6364 1.0174 -0.8444 7 6 5.9729 0.9903 0.4460 8 6 7.3798 0.8785 0.9748 9 7 7.9464 2.2228 1.1470 10 6 8.7132 2.6299 -0.0451 11 6 9.7680 3.2179 0.9027 12 6 11.1922 2.9804 0.4712 13 1 11.7362 2.1278 0.8500 14 6 11.8009 3.8518 -0.4071 15 7 13.0437 3.6442 -0.7840 16 14 10.8598 5.3262 -1.0627 17 1 11.0649 6.4862 -0.1585 18 1 11.3541 5.6645 -2.4216 19 1 9.4126 5.0001 -1.1293 20 6 9.2242 2.1675 1.8813 21 16 4.5238 1.1055 1.4361 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6886 1.8464 -0.8899 26 1 1.6886 1.8464 0.8900 27 1 3.8696 1.1486 -2.0902 28 1 6.3679 0.9592 -1.6368 29 1 7.3669 0.3637 1.9355 30 1 7.9895 0.3149 0.2687 31 1 9.0793 1.7888 -0.6340 32 1 8.2071 3.3811 -0.6514 33 1 9.5748 4.2483 1.2011 34 1 13.4720 4.2574 -1.4016 35 1 9.1512 2.5271 2.9077 36 1 9.7262 1.2028 1.8074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139824514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:52 Heat of formation + Delta-G solvation = 25.761582 kcal Electronic energy + Delta-G solvation = -17385.333615 eV Core-core repulsion = 14576.666818 eV Total energy + Delta-G solvation = -2808.666797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.32779 -38.45151 -37.23454 -32.97708 -31.97101 -29.73570 -27.39551 -26.24685 -25.06726 -24.44262 -22.87243 -21.68668 -19.02422 -18.52917 -17.21823 -16.96717 -16.67404 -15.86137 -15.49189 -15.21879 -14.70029 -14.41968 -13.88198 -13.48136 -13.08387 -12.93307 -12.58509 -12.48628 -12.24220 -11.82048 -11.76142 -11.58973 -11.27598 -11.03930 -10.66995 -10.34681 -10.01168 -9.98205 -9.95519 -9.64617 -9.15786 -8.59482 -8.46097 -8.32250 -8.19201 -6.12584 -4.13289 0.99995 1.68159 2.12168 2.77556 3.28868 3.37391 3.42601 3.70852 4.40663 4.68774 4.74203 4.87318 5.01122 5.05463 5.08094 5.13315 5.17029 5.28614 5.34018 5.60318 5.72266 5.77531 5.88678 6.07052 6.20601 6.26853 6.36985 6.38442 6.48003 6.59889 6.73901 6.81425 6.94237 7.32345 7.65246 7.79090 8.46323 8.90341 9.50384 10.99820 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.003778 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.314297 B = 7409.020726 C = 7743.874088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.139 3.861 4 C -0.207 4.207 5 C -0.103 4.103 6 C -0.148 4.148 7 C -0.133 4.133 8 C 0.083 3.917 9 N -0.479 5.479 10 C -0.009 4.009 11 C 0.001 3.999 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.898 5.898 16 Si 0.876 3.124 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.257 1.257 20 C 0.009 3.991 21 S 0.122 5.878 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.068 0.932 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.257 -5.500 1.210 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.061 3.939 4 C -0.325 4.325 5 C -0.135 4.135 6 C -0.178 4.178 7 C -0.252 4.252 8 C -0.047 4.047 9 N -0.201 5.201 10 C -0.138 4.138 11 C -0.018 4.018 12 C -0.549 4.549 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.536 5.536 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.181 1.181 20 C -0.120 4.120 21 S 0.387 5.613 22 H 0.105 0.895 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.853 -5.202 2.916 23.618 hybrid contribution 0.267 0.395 -2.353 2.401 sum -22.586 -4.807 0.563 23.099 Atomic orbital electron populations 1.22759 0.80969 1.02899 1.00007 1.88003 1.19532 1.27523 1.95408 1.20696 0.87231 0.84984 1.01024 1.23985 0.97707 1.14048 0.96726 1.20035 0.92978 1.01546 0.98938 1.20070 0.96019 1.05507 0.96239 1.24490 0.98478 1.06023 0.96193 1.21193 0.89280 0.93839 1.00405 1.68918 1.20383 1.19194 1.11634 1.24454 0.95178 1.00197 0.93967 1.20496 0.94602 0.94705 0.92010 1.20909 0.95000 1.11996 1.27045 0.90768 1.25016 0.94507 0.97615 0.95715 1.69908 1.12081 1.37761 1.33820 0.86873 0.81405 0.83187 0.78273 1.20274 1.21496 1.18117 1.23827 0.88894 1.00471 0.98805 1.84087 0.96463 1.71869 1.08911 0.89489 0.94014 0.93982 0.91569 0.92342 0.84657 0.84359 0.90528 0.91676 0.91628 0.91805 0.92561 0.92569 0.91362 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.36 10.69 -35.23 -0.38 -4.74 16 3 C 0.14 1.46 6.43 36.00 0.23 1.69 16 4 C -0.21 -2.70 6.14 -36.00 -0.22 -2.92 16 5 C -0.10 -1.36 10.05 -41.21 -0.41 -1.78 16 6 C -0.15 -2.17 10.05 -41.21 -0.41 -2.58 16 7 C -0.13 -2.06 6.10 -36.00 -0.22 -2.28 16 8 C 0.08 1.35 5.31 -4.97 -0.03 1.32 16 9 N -0.48 -9.08 6.32 -246.06 -1.55 -10.64 16 10 C -0.01 -0.19 6.70 -7.54 -0.05 -0.24 16 11 C 0.00 0.03 2.95 -91.24 -0.27 -0.24 16 12 C -0.51 -13.96 9.38 -34.44 -0.32 -14.28 16 13 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 16 Si 0.88 21.14 27.14 -169.99 -4.61 16.52 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.26 -5.93 5.68 56.52 0.32 -5.61 16 20 C 0.01 0.17 7.25 -7.54 -0.05 0.11 16 21 S 0.12 1.69 23.31 -107.50 -2.51 -0.82 16 22 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.07 1.05 7.30 -51.93 -0.38 0.67 16 31 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 32 H 0.06 1.36 7.11 -51.93 -0.37 1.00 16 33 H 0.06 1.33 7.04 -51.93 -0.37 0.96 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -30.27 314.24 -9.63 -39.90 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.35 Total: -0.91 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.75 Total: -17.88 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.78 Total: -36.82 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.38 Total: -4.74 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.61 Total: 16.52 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.51 Total: -0.82 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.27 -9.63 -39.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139824514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.661 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds