Wall clock time and date at job start Mon Mar 30 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50698 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.33387 * 125.20322 * 89.71551 * 4 3 2 6 6 C 1.38423 * 114.92109 * 179.86195 * 5 4 3 7 7 C 1.33387 * 114.92047 * 0.43373 * 6 5 4 8 8 C 1.50706 * 125.20195 * 179.79335 * 7 6 5 9 9 N 1.46898 * 109.47221 * 90.00066 * 8 7 6 10 10 C 1.47480 * 111.00052 * 265.97106 * 9 8 7 11 11 C 1.53516 * 87.93168 * 221.29931 * 10 9 8 12 12 C 1.50695 * 114.34419 * 139.68243 * 11 10 9 13 13 H 1.07997 * 120.00289 * 266.07127 * 12 11 10 14 14 C 1.37885 * 120.00022 * 86.07529 * 12 11 10 15 15 N 1.31512 * 120.00073 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99700 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46899 * 90.00468 * 16 14 12 18 18 H 1.48501 * 109.46848 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47348 * 329.99899 * 16 14 12 20 20 C 1.47481 * 110.99797 * 169.99839 * 9 8 7 21 21 S 1.75881 * 109.59382 * 359.77073 * 7 6 5 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 24 24 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 25 25 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 26 26 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 27 27 H 1.08004 * 122.53797 * 0.02562 * 5 4 3 28 28 H 1.08001 * 122.54224 * 180.20324 * 6 5 4 29 29 H 1.09003 * 109.46710 * 209.99682 * 8 7 6 30 30 H 1.08998 * 109.46911 * 329.99809 * 8 7 6 31 31 H 1.09005 * 113.47263 * 336.06235 * 10 9 8 32 32 H 1.08999 * 113.48126 * 106.52851 * 10 9 8 33 33 H 1.09002 * 114.16317 * 272.37508 * 11 10 9 34 34 H 0.97000 * 119.99945 * 180.02562 * 15 14 12 35 35 H 1.08998 * 113.47650 * 253.46675 * 20 9 8 36 36 H 1.09000 * 113.47874 * 23.87849 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2782 1.1207 -1.0909 6 6 5.6364 1.0174 -0.8444 7 6 5.9729 0.9903 0.4460 8 6 7.3798 0.8785 0.9748 9 7 7.9464 2.2228 1.1470 10 6 8.7132 2.6299 -0.0451 11 6 9.7680 3.2179 0.9027 12 6 11.1922 2.9804 0.4712 13 1 11.7362 2.1278 0.8500 14 6 11.8009 3.8518 -0.4071 15 7 13.0437 3.6442 -0.7840 16 14 10.8598 5.3262 -1.0627 17 1 11.0649 6.4862 -0.1585 18 1 11.3541 5.6645 -2.4216 19 1 9.4126 5.0001 -1.1293 20 6 9.2242 2.1675 1.8813 21 16 4.5238 1.1055 1.4361 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6886 1.8464 -0.8899 26 1 1.6886 1.8464 0.8900 27 1 3.8696 1.1486 -2.0902 28 1 6.3679 0.9592 -1.6368 29 1 7.3669 0.3637 1.9355 30 1 7.9895 0.3149 0.2687 31 1 9.0793 1.7888 -0.6340 32 1 8.2071 3.3811 -0.6514 33 1 9.5748 4.2483 1.2011 34 1 13.4720 4.2574 -1.4016 35 1 9.1512 2.5271 2.9077 36 1 9.7262 1.2028 1.8074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139824514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:51 Heat of formation + Delta-G solvation = 5.105642 kcal Electronic energy + Delta-G solvation = -17386.229324 eV Core-core repulsion = 14576.666818 eV Total energy + Delta-G solvation = -2809.562506 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89599 -39.33253 -38.19551 -34.86170 -33.40837 -31.00520 -28.73224 -27.17092 -26.70192 -25.74948 -24.04056 -23.08543 -20.50720 -19.90048 -19.05129 -18.14936 -17.38922 -16.91079 -16.78952 -16.35230 -16.17789 -15.72351 -15.45754 -14.88403 -14.67713 -14.14251 -13.74399 -13.70179 -13.46539 -13.15564 -13.02178 -12.81372 -12.64042 -12.30642 -12.00999 -11.82789 -11.80429 -11.58351 -11.46140 -11.10312 -10.68173 -10.65354 -9.85510 -9.52395 -9.37391 -8.29244 -6.34270 -0.05682 0.63783 1.06394 1.38399 1.40813 1.53265 1.72707 2.37890 2.99427 3.04097 3.27222 3.77785 3.90504 3.99280 4.12531 4.14788 4.31477 4.37004 4.52753 4.53957 4.56758 4.60848 4.64256 4.70520 4.73355 4.86813 4.88648 5.02808 5.16240 5.24512 5.41230 5.46807 5.57031 5.63210 6.15526 6.19531 6.29673 6.71587 7.32814 8.86686 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.003778 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.314297 B = 7409.020726 C = 7743.874088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.137 3.863 4 C -0.202 4.202 5 C -0.115 4.115 6 C -0.149 4.149 7 C -0.161 4.161 8 C 0.086 3.914 9 N -0.473 5.473 10 C 0.002 3.998 11 C -0.013 4.013 12 C -0.513 4.513 13 H 0.036 0.964 14 C 0.016 3.984 15 N -0.948 5.948 16 Si 0.941 3.059 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.238 1.238 20 C 0.017 3.983 21 S 0.121 5.879 22 H 0.096 0.904 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.266 0.734 35 H 0.084 0.916 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.298 -4.964 1.010 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.059 3.941 4 C -0.320 4.320 5 C -0.146 4.146 6 C -0.180 4.180 7 C -0.279 4.279 8 C -0.044 4.044 9 N -0.196 5.196 10 C -0.127 4.127 11 C -0.033 4.033 12 C -0.551 4.551 13 H 0.054 0.946 14 C -0.181 4.181 15 N -0.587 5.587 16 Si 0.765 3.235 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.161 1.161 20 C -0.112 4.112 21 S 0.386 5.614 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.175 0.825 28 H 0.158 0.842 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.922 -4.680 2.736 26.482 hybrid contribution 1.157 0.122 -2.246 2.530 sum -24.764 -4.559 0.490 25.185 Atomic orbital electron populations 1.22967 0.78978 1.03990 1.01228 1.87950 1.21740 1.27888 1.95667 1.20819 0.85542 0.85184 1.02576 1.24402 0.99140 1.12433 0.96017 1.20249 0.92367 1.01784 1.00157 1.20278 0.96951 1.04663 0.96082 1.24420 0.98418 1.08188 0.96886 1.21153 0.89854 0.92182 1.01224 1.68870 1.19352 1.21277 1.10053 1.24203 0.94468 0.99872 0.94134 1.20486 0.92572 0.95777 0.94434 1.21130 0.96991 1.10522 1.26435 0.94574 1.25881 0.95292 1.00811 0.96156 1.70051 1.14073 1.39390 1.35232 0.85828 0.80881 0.79338 0.77455 1.19643 1.21429 1.16134 1.23711 0.89043 0.99309 0.99094 1.84032 0.96086 1.71848 1.09423 0.88577 0.92941 0.92578 0.89528 0.91240 0.82524 0.84212 0.89260 0.91839 0.92189 0.91719 0.92479 0.92475 0.89734 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.31 10.69 -148.98 -1.59 -9.90 16 3 C 0.14 2.48 6.43 71.24 0.46 2.94 16 4 C -0.20 -4.79 6.14 24.59 0.15 -4.64 16 5 C -0.11 -2.76 10.05 21.22 0.21 -2.54 16 6 C -0.15 -4.10 10.05 21.22 0.21 -3.88 16 7 C -0.16 -4.70 6.10 24.59 0.15 -4.55 16 8 C 0.09 2.66 5.31 85.56 0.45 3.11 16 9 N -0.47 -17.18 6.32 -932.41 -5.89 -23.07 16 10 C 0.00 0.10 6.70 83.58 0.56 0.66 16 11 C -0.01 -0.61 2.95 -11.20 -0.03 -0.64 16 12 C -0.51 -28.50 9.38 25.60 0.24 -28.26 16 13 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 14 C 0.02 0.93 5.47 84.66 0.46 1.39 16 15 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 16 Si 0.94 43.47 27.14 68.60 1.86 45.33 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.24 -10.17 5.68 99.48 0.56 -9.61 16 20 C 0.02 0.66 7.25 83.58 0.61 1.26 16 21 S 0.12 3.14 23.31 -56.49 -1.32 1.82 16 22 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 28 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 29 H 0.09 2.52 8.08 -2.39 -0.02 2.50 16 30 H 0.06 1.99 7.30 -2.39 -0.02 1.97 16 31 H 0.06 2.50 7.38 -2.38 -0.02 2.48 16 32 H 0.06 2.63 7.11 -2.39 -0.02 2.61 16 33 H 0.06 2.61 7.04 -2.39 -0.02 2.59 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.06 2.37 7.87 -2.39 -0.02 2.35 16 Total: -1.00 -65.02 314.24 -1.00 -66.02 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.91 Total: 11.47 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 4.72 Total: -33.62 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -5.59 Total: -81.12 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.59 Total: -9.90 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.86 Total: 45.33 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.32 Total: 1.82 kcal Total: -65.02 -1.00 -66.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139824514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.127 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds