Wall clock time and date at job start Mon Mar 30 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47555 * 2 1 4 4 C 1.42895 * 114.00423 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47127 * 179.97438 * 4 3 2 6 6 O 1.21288 * 120.00092 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99937 * 179.97438 * 5 4 3 8 8 C 1.40006 * 120.00180 * 175.45439 * 7 5 4 9 9 C 1.39370 * 119.90907 * 325.89972 * 8 7 5 10 10 C 1.38363 * 120.47196 * 180.02562 * 9 8 7 11 11 C 1.38011 * 120.28574 * 0.02562 * 10 9 8 12 12 F 1.35108 * 120.09145 * 179.97438 * 11 10 9 13 13 C 1.40998 * 119.81274 * 359.97438 * 11 10 9 14 14 C 1.41294 * 120.22819 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00245 * 334.90590 * 14 13 11 16 16 C 1.39927 * 120.00264 * 155.18292 * 14 13 11 17 17 N 1.30847 * 120.00322 * 160.46685 * 16 14 13 18 18 Si 1.86806 * 119.99927 * 340.46879 * 16 14 13 19 19 H 1.48501 * 109.47165 * 95.24971 * 18 16 14 20 20 H 1.48499 * 109.47395 * 215.25316 * 18 16 14 21 21 H 1.48501 * 109.46658 * 335.25126 * 18 16 14 22 22 C 1.38138 * 119.91457 * 146.13183 * 8 7 5 23 23 H 1.09001 * 109.47572 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47297 * 299.99676 * 1 2 3 25 25 H 1.09005 * 109.47342 * 60.00037 * 1 2 3 26 26 H 1.09005 * 109.47230 * 239.99690 * 2 1 3 27 27 H 1.09005 * 109.47342 * 119.99963 * 2 1 3 28 28 H 1.08998 * 109.46988 * 60.00145 * 4 3 2 29 29 H 1.08998 * 109.47413 * 300.00062 * 4 3 2 30 30 H 0.96999 * 120.00582 * 355.45257 * 7 5 4 31 31 H 1.07999 * 119.76417 * 359.97438 * 9 8 7 32 32 H 1.07998 * 119.85999 * 179.97438 * 10 9 8 33 33 H 0.97003 * 120.00115 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.14687 * 0.02630 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9161 -0.0001 6 8 2.9609 3.7729 -0.0005 7 7 5.1209 3.2662 0.0008 8 6 5.4830 4.6152 -0.0959 9 6 4.7112 5.4889 -0.8597 10 6 5.0587 6.8241 -0.9638 11 6 6.1756 7.3055 -0.3115 12 9 6.5116 8.6100 -0.4163 13 6 6.9650 6.4322 0.4645 14 6 8.1106 6.9156 1.1356 15 1 8.6212 7.7936 0.7685 16 6 8.5870 6.2534 2.2725 17 7 9.8196 6.4400 2.6699 18 14 7.4633 5.1029 3.2228 19 1 7.6784 3.7079 2.7613 20 1 7.7697 5.1975 4.6727 21 1 6.0484 5.4888 2.9897 22 6 6.6070 5.0756 0.5620 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9764 -0.8892 29 1 3.8333 0.9767 0.8908 30 1 5.8068 2.5837 0.0685 31 1 3.8362 5.1209 -1.3747 32 1 4.4538 7.4923 -1.5587 33 1 10.1500 5.9807 3.4579 34 1 7.2071 4.3973 1.1504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142830518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:40 Heat of formation + Delta-G solvation = -108.798499 kcal Electronic energy + Delta-G solvation = -19701.298551 eV Core-core repulsion = 16320.583615 eV Total energy + Delta-G solvation = -3380.714936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.35486 -39.99679 -38.12724 -37.08063 -34.40192 -33.49046 -31.74794 -30.63025 -29.14321 -26.89278 -25.28160 -23.02083 -22.08195 -21.53587 -19.85563 -17.71530 -17.43204 -16.93024 -16.61466 -16.42973 -15.72221 -15.18227 -14.89008 -14.41252 -14.36467 -14.14094 -13.47163 -13.19186 -12.94826 -12.80209 -12.64781 -12.25146 -11.96741 -11.86123 -11.63572 -11.45273 -11.41590 -10.93113 -10.68473 -10.27801 -9.89833 -9.86088 -9.59243 -9.26081 -9.19299 -7.87854 -7.15200 -7.11507 -4.61557 2.13592 2.46000 2.84481 2.88022 2.99523 3.14677 3.24629 3.85264 3.95399 4.32782 4.72284 4.77963 4.92791 5.02256 5.05107 5.09835 5.20499 5.41184 5.66584 5.70330 5.85217 5.89415 6.25206 6.36673 6.42806 6.55644 6.86381 6.92704 7.21856 7.33146 7.45842 7.47459 7.79997 7.95993 8.19713 8.38126 8.52633 8.60297 9.89536 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.005145 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.621265 B = 5441.352826 C = 6368.309814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.046 3.954 5 C 0.507 3.493 6 O -0.498 6.498 7 N -0.670 5.670 8 C 0.173 3.827 9 C -0.215 4.215 10 C -0.097 4.097 11 C -0.019 4.019 12 F -0.157 7.157 13 C 0.081 3.919 14 C -0.431 4.431 15 H 0.098 0.902 16 C 0.085 3.915 17 N -0.794 5.794 18 Si 0.914 3.086 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.241 1.241 22 C -0.252 4.252 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.404 0.596 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.289 0.711 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 -14.152 -2.751 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.034 4.034 5 C 0.292 3.708 6 O -0.371 6.371 7 N -0.316 5.316 8 C 0.081 3.919 9 C -0.236 4.236 10 C -0.117 4.117 11 C -0.040 4.040 12 F -0.136 7.136 13 C 0.077 3.923 14 C -0.459 4.459 15 H 0.116 0.884 16 C -0.136 4.136 17 N -0.417 5.417 18 Si 0.740 3.260 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.164 1.164 22 C -0.273 4.273 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.239 0.761 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.546 -13.356 -2.598 16.621 hybrid contribution 0.410 -0.975 0.563 1.198 sum -9.136 -14.331 -2.034 17.116 Atomic orbital electron populations 1.21727 0.93431 1.02127 1.03548 1.22543 0.95988 0.83481 1.00132 1.88033 1.18504 1.26214 1.95418 1.22174 0.83949 0.94659 1.02589 1.20247 0.82725 0.90508 0.77329 1.90752 1.49045 1.51357 1.45908 1.43394 1.07104 1.07862 1.73231 1.17375 0.95666 0.81889 0.96959 1.20128 1.03488 0.92823 1.07182 1.20476 0.95922 0.95567 0.99711 1.17713 0.98639 0.78124 1.09479 1.91309 1.92636 1.34158 1.95481 1.17401 0.92132 0.90283 0.92521 1.19444 1.06405 1.11736 1.08286 0.88430 1.26199 0.94782 0.95255 0.97346 1.69697 1.14618 1.35468 1.21897 0.86293 0.83171 0.79429 0.77063 1.19764 1.21654 1.16389 1.20476 1.02003 0.95401 1.09428 0.91052 0.91649 0.91655 0.93212 0.93225 0.90127 0.90293 0.76144 0.86575 0.87105 0.90088 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.15 0.38 -0.86 16 2 C 0.06 0.50 6.66 37.15 0.25 0.75 16 3 O -0.36 -4.95 9.88 -55.14 -0.54 -5.49 16 4 C 0.05 0.55 6.42 36.01 0.23 0.78 16 5 C 0.51 8.54 7.65 -10.99 -0.08 8.46 16 6 O -0.50 -10.69 14.20 -14.36 -0.20 -10.90 16 7 N -0.67 -11.30 5.34 -9.90 -0.05 -11.35 16 8 C 0.17 3.72 6.26 -83.74 -0.52 3.19 16 9 C -0.22 -4.75 8.66 -39.11 -0.34 -5.09 16 10 C -0.10 -2.18 10.00 -39.62 -0.40 -2.57 16 11 C -0.02 -0.47 7.31 -38.62 -0.28 -0.76 16 12 F -0.16 -3.91 16.71 2.25 0.04 -3.87 16 13 C 0.08 2.08 5.22 -106.78 -0.56 1.52 16 14 C -0.43 -11.67 9.30 -37.79 -0.35 -12.02 16 15 H 0.10 2.81 7.89 -52.49 -0.41 2.40 16 16 C 0.08 2.18 5.41 -17.34 -0.09 2.08 16 17 N -0.79 -20.53 13.93 55.55 0.77 -19.75 16 18 Si 0.91 20.26 24.43 -169.99 -4.15 16.11 16 19 H -0.27 -5.55 6.64 56.52 0.38 -5.18 16 20 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.24 -5.68 6.79 56.52 0.38 -5.30 16 22 C -0.25 -5.85 7.07 -38.71 -0.27 -6.12 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16 31 H 0.12 2.51 6.43 -52.49 -0.34 2.17 16 32 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 34 H 0.11 2.45 4.17 -52.49 -0.22 2.23 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -31.54 295.92 -5.62 -37.15 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.89 Total: 4.29 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.04 Total: -10.64 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.72 Total: -31.10 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.75 Total: -16.39 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.15 Total: 16.11 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.54 -5.62 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142830518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.648 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds