Wall clock time and date at job start Mon Mar 30 2020 00:49:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 O 1.42901 * 109.47555 * 2 1
4 4 C 1.42895 * 114.00423 * 179.97438 * 3 2 1
5 5 C 1.50700 * 109.47127 * 179.97438 * 4 3 2
6 6 O 1.21288 * 120.00092 * 0.02562 * 5 4 3
7 7 N 1.34774 * 119.99937 * 179.97438 * 5 4 3
8 8 C 1.40006 * 120.00180 * 175.45439 * 7 5 4
9 9 C 1.39370 * 119.90907 * 325.89972 * 8 7 5
10 10 C 1.38363 * 120.47196 * 180.02562 * 9 8 7
11 11 C 1.38011 * 120.28574 * 0.02562 * 10 9 8
12 12 F 1.35108 * 120.09145 * 179.97438 * 11 10 9
13 13 C 1.40998 * 119.81274 * 359.97438 * 11 10 9
14 14 C 1.41294 * 120.22819 * 179.97438 * 13 11 10
15 15 H 1.07995 * 120.00245 * 334.90590 * 14 13 11
16 16 C 1.39927 * 120.00264 * 155.18292 * 14 13 11
17 17 N 1.30847 * 120.00322 * 160.46685 * 16 14 13
18 18 Si 1.86806 * 119.99927 * 340.46879 * 16 14 13
19 19 H 1.48501 * 109.47165 * 95.24971 * 18 16 14
20 20 H 1.48499 * 109.47395 * 215.25316 * 18 16 14
21 21 H 1.48501 * 109.46658 * 335.25126 * 18 16 14
22 22 C 1.38138 * 119.91457 * 146.13183 * 8 7 5
23 23 H 1.09001 * 109.47572 * 179.97438 * 1 2 3
24 24 H 1.08997 * 109.47297 * 299.99676 * 1 2 3
25 25 H 1.09005 * 109.47342 * 60.00037 * 1 2 3
26 26 H 1.09005 * 109.47230 * 239.99690 * 2 1 3
27 27 H 1.09005 * 109.47342 * 119.99963 * 2 1 3
28 28 H 1.08998 * 109.46988 * 60.00145 * 4 3 2
29 29 H 1.08998 * 109.47413 * 300.00062 * 4 3 2
30 30 H 0.96999 * 120.00582 * 355.45257 * 7 5 4
31 31 H 1.07999 * 119.76417 * 359.97438 * 9 8 7
32 32 H 1.07998 * 119.85999 * 179.97438 * 10 9 8
33 33 H 0.97003 * 120.00115 * 180.02562 * 17 16 14
34 34 H 1.08000 * 120.14687 * 0.02630 * 22 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4308 1.4601 0.0006
5 6 3.8194 2.9161 -0.0001
6 8 2.9609 3.7729 -0.0005
7 7 5.1209 3.2662 0.0008
8 6 5.4830 4.6152 -0.0959
9 6 4.7112 5.4889 -0.8597
10 6 5.0587 6.8241 -0.9638
11 6 6.1756 7.3055 -0.3115
12 9 6.5116 8.6100 -0.4163
13 6 6.9650 6.4322 0.4645
14 6 8.1106 6.9156 1.1356
15 1 8.6212 7.7936 0.7685
16 6 8.5870 6.2534 2.2725
17 7 9.8196 6.4400 2.6699
18 14 7.4633 5.1029 3.2228
19 1 7.6784 3.7079 2.7613
20 1 7.7697 5.1975 4.6727
21 1 6.0484 5.4888 2.9897
22 6 6.6070 5.0756 0.5620
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3634 0.5138 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 1.8933 -0.5139 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 3.8340 0.9764 -0.8892
29 1 3.8333 0.9767 0.8908
30 1 5.8068 2.5837 0.0685
31 1 3.8362 5.1209 -1.3747
32 1 4.4538 7.4923 -1.5587
33 1 10.1500 5.9807 3.4579
34 1 7.2071 4.3973 1.1504
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001142830518.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:49:40
Heat of formation + Delta-G solvation = -108.798499 kcal
Electronic energy + Delta-G solvation = -19701.298551 eV
Core-core repulsion = 16320.583615 eV
Total energy + Delta-G solvation = -3380.714936 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-47.35486 -39.99679 -38.12724 -37.08063 -34.40192 -33.49046 -31.74794 -30.63025
-29.14321 -26.89278 -25.28160 -23.02083 -22.08195 -21.53587 -19.85563 -17.71530
-17.43204 -16.93024 -16.61466 -16.42973 -15.72221 -15.18227 -14.89008 -14.41252
-14.36467 -14.14094 -13.47163 -13.19186 -12.94826 -12.80209 -12.64781 -12.25146
-11.96741 -11.86123 -11.63572 -11.45273 -11.41590 -10.93113 -10.68473 -10.27801
-9.89833 -9.86088 -9.59243 -9.26081 -9.19299 -7.87854 -7.15200 -7.11507
-4.61557 2.13592 2.46000 2.84481 2.88022 2.99523 3.14677 3.24629
3.85264 3.95399 4.32782 4.72284 4.77963 4.92791 5.02256 5.05107
5.09835 5.20499 5.41184 5.66584 5.70330 5.85217 5.89415 6.25206
6.36673 6.42806 6.55644 6.86381 6.92704 7.21856 7.33146 7.45842
7.47459 7.79997 7.95993 8.19713 8.38126 8.52633 8.60297 9.89536
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.023651 B = 0.005145 C = 0.004396
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1183.621265 B = 5441.352826 C = 6368.309814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.055 3.945
3 O -0.363 6.363
4 C 0.046 3.954
5 C 0.507 3.493
6 O -0.498 6.498
7 N -0.670 5.670
8 C 0.173 3.827
9 C -0.215 4.215
10 C -0.097 4.097
11 C -0.019 4.019
12 F -0.157 7.157
13 C 0.081 3.919
14 C -0.431 4.431
15 H 0.098 0.902
16 C 0.085 3.915
17 N -0.794 5.794
18 Si 0.914 3.086
19 H -0.271 1.271
20 H -0.289 1.289
21 H -0.241 1.241
22 C -0.252 4.252
23 H 0.071 0.929
24 H 0.064 0.936
25 H 0.064 0.936
26 H 0.050 0.950
27 H 0.049 0.951
28 H 0.081 0.919
29 H 0.079 0.921
30 H 0.404 0.596
31 H 0.116 0.884
32 H 0.111 0.889
33 H 0.289 0.711
34 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.014 -14.152 -2.751 17.002
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.021 4.021
3 O -0.282 6.282
4 C -0.034 4.034
5 C 0.292 3.708
6 O -0.371 6.371
7 N -0.316 5.316
8 C 0.081 3.919
9 C -0.236 4.236
10 C -0.117 4.117
11 C -0.040 4.040
12 F -0.136 7.136
13 C 0.077 3.923
14 C -0.459 4.459
15 H 0.116 0.884
16 C -0.136 4.136
17 N -0.417 5.417
18 Si 0.740 3.260
19 H -0.198 1.198
20 H -0.217 1.217
21 H -0.164 1.164
22 C -0.273 4.273
23 H 0.089 0.911
24 H 0.084 0.916
25 H 0.083 0.917
26 H 0.068 0.932
27 H 0.068 0.932
28 H 0.099 0.901
29 H 0.097 0.903
30 H 0.239 0.761
31 H 0.134 0.866
32 H 0.129 0.871
33 H 0.099 0.901
34 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -9.546 -13.356 -2.598 16.621
hybrid contribution 0.410 -0.975 0.563 1.198
sum -9.136 -14.331 -2.034 17.116
Atomic orbital electron populations
1.21727 0.93431 1.02127 1.03548 1.22543 0.95988 0.83481 1.00132
1.88033 1.18504 1.26214 1.95418 1.22174 0.83949 0.94659 1.02589
1.20247 0.82725 0.90508 0.77329 1.90752 1.49045 1.51357 1.45908
1.43394 1.07104 1.07862 1.73231 1.17375 0.95666 0.81889 0.96959
1.20128 1.03488 0.92823 1.07182 1.20476 0.95922 0.95567 0.99711
1.17713 0.98639 0.78124 1.09479 1.91309 1.92636 1.34158 1.95481
1.17401 0.92132 0.90283 0.92521 1.19444 1.06405 1.11736 1.08286
0.88430 1.26199 0.94782 0.95255 0.97346 1.69697 1.14618 1.35468
1.21897 0.86293 0.83171 0.79429 0.77063 1.19764 1.21654 1.16389
1.20476 1.02003 0.95401 1.09428 0.91052 0.91649 0.91655 0.93212
0.93225 0.90127 0.90293 0.76144 0.86575 0.87105 0.90088 0.87197
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.24 10.28 37.15 0.38 -0.86 16
2 C 0.06 0.50 6.66 37.15 0.25 0.75 16
3 O -0.36 -4.95 9.88 -55.14 -0.54 -5.49 16
4 C 0.05 0.55 6.42 36.01 0.23 0.78 16
5 C 0.51 8.54 7.65 -10.99 -0.08 8.46 16
6 O -0.50 -10.69 14.20 -14.36 -0.20 -10.90 16
7 N -0.67 -11.30 5.34 -9.90 -0.05 -11.35 16
8 C 0.17 3.72 6.26 -83.74 -0.52 3.19 16
9 C -0.22 -4.75 8.66 -39.11 -0.34 -5.09 16
10 C -0.10 -2.18 10.00 -39.62 -0.40 -2.57 16
11 C -0.02 -0.47 7.31 -38.62 -0.28 -0.76 16
12 F -0.16 -3.91 16.71 2.25 0.04 -3.87 16
13 C 0.08 2.08 5.22 -106.78 -0.56 1.52 16
14 C -0.43 -11.67 9.30 -37.79 -0.35 -12.02 16
15 H 0.10 2.81 7.89 -52.49 -0.41 2.40 16
16 C 0.08 2.18 5.41 -17.34 -0.09 2.08 16
17 N -0.79 -20.53 13.93 55.55 0.77 -19.75 16
18 Si 0.91 20.26 24.43 -169.99 -4.15 16.11 16
19 H -0.27 -5.55 6.64 56.52 0.38 -5.18 16
20 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16
21 H -0.24 -5.68 6.79 56.52 0.38 -5.30 16
22 C -0.25 -5.85 7.07 -38.71 -0.27 -6.12 16
23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16
31 H 0.12 2.51 6.43 -52.49 -0.34 2.17 16
32 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16
33 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16
34 H 0.11 2.45 4.17 -52.49 -0.22 2.23 16
LS Contribution 295.92 15.07 4.46 4.46
Total: -1.00 -31.54 295.92 -5.62 -37.15
By element:
Atomic # 1 Polarization: 8.18 SS G_CDS: -3.89 Total: 4.29 kcal
Atomic # 6 Polarization: -8.60 SS G_CDS: -2.04 Total: -10.64 kcal
Atomic # 7 Polarization: -31.82 SS G_CDS: 0.72 Total: -31.10 kcal
Atomic # 8 Polarization: -15.64 SS G_CDS: -0.75 Total: -16.39 kcal
Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal
Atomic # 14 Polarization: 20.26 SS G_CDS: -4.15 Total: 16.11 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -31.54 -5.62 -37.15 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001142830518.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.648 kcal
(2) G-P(sol) polarization free energy of solvation -31.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.798 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds