Wall clock time and date at job start Mon Mar 30 2020 00:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47555 * 2 1 4 4 C 1.42895 * 114.00423 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47127 * 179.97438 * 4 3 2 6 6 O 1.21288 * 120.00092 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99937 * 179.97438 * 5 4 3 8 8 C 1.40006 * 120.00180 * 175.45439 * 7 5 4 9 9 C 1.39370 * 119.90907 * 325.89972 * 8 7 5 10 10 C 1.38363 * 120.47196 * 180.02562 * 9 8 7 11 11 C 1.38011 * 120.28574 * 0.02562 * 10 9 8 12 12 F 1.35108 * 120.09145 * 179.97438 * 11 10 9 13 13 C 1.40998 * 119.81274 * 359.97438 * 11 10 9 14 14 C 1.41294 * 120.22819 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00245 * 334.90590 * 14 13 11 16 16 C 1.39927 * 120.00264 * 155.18292 * 14 13 11 17 17 N 1.30847 * 120.00322 * 160.46685 * 16 14 13 18 18 Si 1.86806 * 119.99927 * 340.46879 * 16 14 13 19 19 H 1.48501 * 109.47165 * 95.24971 * 18 16 14 20 20 H 1.48499 * 109.47395 * 215.25316 * 18 16 14 21 21 H 1.48501 * 109.46658 * 335.25126 * 18 16 14 22 22 C 1.38138 * 119.91457 * 146.13183 * 8 7 5 23 23 H 1.09001 * 109.47572 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47297 * 299.99676 * 1 2 3 25 25 H 1.09005 * 109.47342 * 60.00037 * 1 2 3 26 26 H 1.09005 * 109.47230 * 239.99690 * 2 1 3 27 27 H 1.09005 * 109.47342 * 119.99963 * 2 1 3 28 28 H 1.08998 * 109.46988 * 60.00145 * 4 3 2 29 29 H 1.08998 * 109.47413 * 300.00062 * 4 3 2 30 30 H 0.96999 * 120.00582 * 355.45257 * 7 5 4 31 31 H 1.07999 * 119.76417 * 359.97438 * 9 8 7 32 32 H 1.07998 * 119.85999 * 179.97438 * 10 9 8 33 33 H 0.97003 * 120.00115 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.14687 * 0.02630 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9161 -0.0001 6 8 2.9609 3.7729 -0.0005 7 7 5.1209 3.2662 0.0008 8 6 5.4830 4.6152 -0.0959 9 6 4.7112 5.4889 -0.8597 10 6 5.0587 6.8241 -0.9638 11 6 6.1756 7.3055 -0.3115 12 9 6.5116 8.6100 -0.4163 13 6 6.9650 6.4322 0.4645 14 6 8.1106 6.9156 1.1356 15 1 8.6212 7.7936 0.7685 16 6 8.5870 6.2534 2.2725 17 7 9.8196 6.4400 2.6699 18 14 7.4633 5.1029 3.2228 19 1 7.6784 3.7079 2.7613 20 1 7.7697 5.1975 4.6727 21 1 6.0484 5.4888 2.9897 22 6 6.6070 5.0756 0.5620 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9764 -0.8892 29 1 3.8333 0.9767 0.8908 30 1 5.8068 2.5837 0.0685 31 1 3.8362 5.1209 -1.3747 32 1 4.4538 7.4923 -1.5587 33 1 10.1500 5.9807 3.4579 34 1 7.2071 4.3973 1.1504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142830518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:39 Heat of formation + Delta-G solvation = -130.259666 kcal Electronic energy + Delta-G solvation = -19702.229177 eV Core-core repulsion = 16320.583615 eV Total energy + Delta-G solvation = -3381.645562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.29777 -41.40774 -39.40368 -38.43151 -36.08381 -35.24827 -32.59705 -32.40063 -30.60372 -28.13518 -27.18210 -23.89978 -23.67760 -23.05683 -21.45158 -19.50409 -18.86753 -18.27689 -18.02981 -17.44200 -17.14123 -16.90230 -16.45613 -16.07821 -15.73625 -15.64282 -15.22834 -14.64179 -14.18290 -14.11202 -13.86567 -13.85187 -13.54968 -13.25006 -13.21785 -12.74471 -12.51714 -12.29505 -12.18573 -12.08878 -11.70890 -11.10664 -11.05951 -10.77561 -10.64122 -9.74755 -9.02852 -8.90043 -6.62366 0.39960 0.61378 1.17768 1.33803 1.45842 1.57712 1.75823 2.05604 2.47777 3.01628 3.26610 3.65492 3.85008 4.08606 4.18002 4.18665 4.31462 4.37028 4.45504 4.53469 4.56404 4.76376 4.82732 4.85071 5.05225 5.12676 5.28654 5.43873 5.56396 5.57347 5.67692 5.97843 6.10006 6.21418 6.51841 6.53918 6.62785 7.15679 8.05139 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.005145 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.621265 B = 5441.352826 C = 6368.309814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.054 3.946 5 C 0.503 3.497 6 O -0.550 6.550 7 N -0.660 5.660 8 C 0.181 3.819 9 C -0.212 4.212 10 C -0.091 4.091 11 C -0.053 4.053 12 F -0.166 7.166 13 C 0.066 3.934 14 C -0.471 4.471 15 H 0.057 0.943 16 C 0.053 3.947 17 N -0.829 5.829 18 Si 0.965 3.035 19 H -0.234 1.234 20 H -0.275 1.275 21 H -0.264 1.264 22 C -0.252 4.252 23 H 0.097 0.903 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.426 0.574 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.301 0.699 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -17.912 -2.630 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.323 6.323 4 C -0.025 4.025 5 C 0.292 3.708 6 O -0.426 6.426 7 N -0.308 5.308 8 C 0.087 3.913 9 C -0.233 4.233 10 C -0.110 4.110 11 C -0.074 4.074 12 F -0.146 7.146 13 C 0.062 3.938 14 C -0.499 4.499 15 H 0.075 0.925 16 C -0.164 4.164 17 N -0.453 5.453 18 Si 0.788 3.212 19 H -0.158 1.158 20 H -0.201 1.201 21 H -0.189 1.189 22 C -0.273 4.273 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.265 0.735 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.112 0.888 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.803 -17.172 -2.488 20.439 hybrid contribution 0.683 0.171 0.412 0.816 sum -10.120 -17.001 -2.076 19.894 Atomic orbital electron populations 1.21786 0.93439 1.03472 1.02331 1.22800 0.96090 0.81802 1.01980 1.87988 1.19467 1.29022 1.95843 1.22257 0.83730 0.90517 1.05967 1.21306 0.81665 0.92618 0.75222 1.90732 1.50343 1.53391 1.48155 1.43355 1.08314 1.06359 1.72746 1.17421 0.94419 0.84207 0.95255 1.20395 1.03439 0.92781 1.06665 1.20755 0.94995 0.96333 0.98945 1.18035 1.00031 0.78059 1.11232 1.91271 1.92875 1.34733 1.95686 1.17600 0.91878 0.91671 0.92623 1.19361 1.08098 1.11872 1.10591 0.92462 1.26863 0.95840 0.96479 0.97247 1.69702 1.15748 1.36879 1.22960 0.85525 0.79596 0.79452 0.76641 1.15818 1.20102 1.18879 1.20578 1.02686 0.94508 1.09546 0.88423 0.92960 0.92800 0.91173 0.91389 0.86357 0.86827 0.73526 0.85705 0.84614 0.88828 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.40 -9.68 9.88 -129.94 -1.28 -10.96 16 4 C 0.05 1.02 6.42 71.24 0.46 1.48 16 5 C 0.50 15.31 7.65 87.66 0.67 15.98 16 6 O -0.55 -22.62 14.20 15.98 0.23 -22.39 16 7 N -0.66 -19.87 5.34 -303.61 -1.62 -21.49 16 8 C 0.18 7.38 6.26 38.08 0.24 7.61 16 9 C -0.21 -9.02 8.66 22.57 0.20 -8.82 16 10 C -0.09 -4.02 10.00 22.25 0.22 -3.80 16 11 C -0.05 -2.70 7.31 22.89 0.17 -2.53 16 12 F -0.17 -8.67 16.71 44.97 0.75 -7.92 16 13 C 0.07 3.46 5.22 -21.26 -0.11 3.35 16 14 C -0.47 -26.68 9.30 23.43 0.22 -26.46 16 15 H 0.06 3.57 7.89 -2.91 -0.02 3.55 16 16 C 0.05 2.77 5.41 85.25 0.46 3.23 16 17 N -0.83 -43.65 13.93 21.82 0.30 -43.35 16 18 Si 0.97 40.58 24.43 68.60 1.68 42.26 16 19 H -0.23 -8.39 6.64 99.48 0.66 -7.73 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 H -0.26 -12.08 6.79 99.48 0.68 -11.41 16 22 C -0.25 -11.39 7.07 22.83 0.16 -11.23 16 23 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 27 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.43 9.00 8.82 -92.71 -0.82 8.18 16 31 H 0.13 5.16 6.43 -2.91 -0.02 5.14 16 32 H 0.14 5.21 8.06 -2.91 -0.02 5.19 16 33 H 0.30 13.93 8.30 -92.71 -0.77 13.16 16 34 H 0.12 5.15 4.17 -2.91 -0.01 5.14 16 Total: -1.00 -71.75 295.92 4.20 -67.55 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.24 Total: 17.71 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.90 Total: -21.41 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -1.32 Total: -64.84 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.06 Total: -33.35 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.75 Total: -7.92 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.68 Total: 42.26 kcal Total: -71.75 4.20 -67.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142830518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.708 kcal (2) G-P(sol) polarization free energy of solvation -71.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds