Wall clock time and date at job start Mon Mar 30 2020 00:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 116.99973 * 2 1 4 4 C 1.38713 * 120.04439 * 359.97438 * 3 2 1 5 5 C 1.38345 * 119.91932 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.99593 * 179.97438 * 5 4 3 7 7 C 1.38512 * 120.00832 * 0.02562 * 5 4 3 8 8 C 1.38209 * 120.08309 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.96160 * 180.02562 * 8 7 5 10 10 N 1.46500 * 109.47372 * 89.99760 * 9 8 7 11 11 C 1.34771 * 120.00594 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00431 * 180.02562 * 11 10 9 14 14 C 1.50701 * 109.47209 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99979 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99782 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99510 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00087 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47018 * 89.99794 * 18 16 14 20 20 H 1.48500 * 109.46824 * 209.99855 * 18 16 14 21 21 H 1.48497 * 109.47148 * 329.99625 * 18 16 14 22 22 C 1.38180 * 120.08200 * 359.97438 * 8 7 5 23 23 H 1.08994 * 109.47485 * 300.00226 * 1 2 3 24 24 H 1.08999 * 109.47051 * 60.00416 * 1 2 3 25 25 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.03903 * 0.27493 * 4 3 2 27 27 H 1.08000 * 119.96166 * 179.97438 * 7 5 4 28 28 H 1.08993 * 109.47553 * 210.00214 * 9 8 7 29 29 H 1.09004 * 109.46761 * 330.00028 * 9 8 7 30 30 H 0.97010 * 119.99548 * 0.02562 * 10 9 8 31 31 H 1.09003 * 109.47579 * 300.00188 * 13 11 10 32 32 H 1.09004 * 109.47122 * 60.00289 * 13 11 10 33 33 H 0.97008 * 119.99913 * 180.02562 * 17 16 14 34 34 H 1.07999 * 120.00105 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3747 -0.0005 5 6 1.9221 3.6060 -0.0011 6 9 1.1887 4.7406 -0.0021 7 6 3.3054 3.6757 -0.0016 8 6 4.0575 2.5161 -0.0011 9 6 5.5624 2.5951 -0.0011 10 7 6.0501 2.6214 1.3801 11 6 7.3733 2.6915 1.6265 12 8 8.1604 2.7333 0.7046 13 6 7.8749 2.7180 3.0472 14 6 9.3798 2.7971 3.0472 15 1 9.9191 2.8258 2.1119 16 6 10.0682 2.8339 4.2414 17 7 11.3815 2.9034 4.2413 18 14 9.1355 2.7849 5.8591 19 1 8.9624 1.3739 6.2881 20 1 9.8999 3.5267 6.8938 21 1 7.8028 3.4154 5.6813 22 6 3.4312 1.2844 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2127 2.3198 0.0035 27 1 3.7971 4.6373 -0.0024 28 1 5.9720 1.7253 -0.5145 29 1 5.8786 3.5028 -0.5153 30 1 5.4206 2.5884 2.1175 31 1 7.4650 3.5874 3.5612 32 1 7.5592 1.8099 3.5610 33 1 11.8659 2.9289 5.0814 34 1 4.0202 0.3792 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:33 Heat of formation + Delta-G solvation = -97.946940 kcal Electronic energy + Delta-G solvation = -19138.992757 eV Core-core repulsion = 15758.748380 eV Total energy + Delta-G solvation = -3380.244377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.19236 -40.50922 -38.92390 -37.73873 -34.32368 -32.83103 -31.33135 -30.64261 -29.58431 -27.77712 -26.13598 -23.06763 -22.92210 -21.53015 -19.73252 -18.46014 -17.34100 -16.92245 -16.50666 -16.31515 -16.23537 -15.88147 -15.67844 -15.30227 -14.81276 -14.60623 -14.11439 -13.63003 -13.35423 -12.99382 -12.72310 -12.52822 -12.40440 -12.14492 -11.79125 -11.59376 -11.41546 -11.31637 -10.80313 -10.55205 -9.98678 -9.33104 -9.25333 -8.73910 -8.65059 -8.58801 -8.54888 -6.02225 -4.01904 0.73268 0.93974 2.79575 3.14367 3.27559 3.34072 3.36182 3.58004 3.84843 3.98821 4.30083 4.41728 4.55929 4.65291 4.72930 4.73535 4.92049 5.02805 5.07837 5.28358 5.41330 5.65189 5.69367 5.78715 5.81273 6.14591 6.20202 6.34608 6.61989 6.87701 6.92530 6.93643 7.54831 8.10112 8.56818 9.07708 9.18809 9.56141 11.10799 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.003674 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.913027 B = 7619.127242 C = 7763.061081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.155 3.845 4 C -0.245 4.245 5 C 0.137 3.863 6 F -0.136 7.136 7 C -0.172 4.172 8 C -0.030 4.030 9 C 0.159 3.841 10 N -0.746 5.746 11 C 0.523 3.477 12 O -0.530 6.530 13 C -0.029 4.029 14 C -0.513 4.513 15 H 0.093 0.907 16 C 0.068 3.932 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.143 4.143 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.397 0.603 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.624 -3.010 -7.576 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.109 3.891 4 C -0.264 4.264 5 C 0.118 3.882 6 F -0.115 7.115 7 C -0.192 4.192 8 C -0.031 4.031 9 C 0.036 3.964 10 N -0.402 5.402 11 C 0.312 3.688 12 O -0.405 6.405 13 C -0.069 4.069 14 C -0.551 4.551 15 H 0.110 0.890 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.162 4.162 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.158 0.842 27 H 0.159 0.841 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.230 0.770 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.788 -3.119 -8.142 26.277 hybrid contribution -1.283 0.322 1.297 1.852 sum -26.071 -2.797 -6.846 27.100 Atomic orbital electron populations 1.23126 0.78029 1.04320 1.01563 1.86129 1.21677 1.26157 1.88290 1.18656 0.91934 0.83759 0.94769 1.21145 1.01104 0.91255 1.12935 1.17302 0.89087 0.81479 1.00377 1.91515 1.77262 1.49031 1.93663 1.21045 0.91571 1.00194 1.06380 1.19607 0.95840 0.91457 0.96185 1.20104 0.86893 1.03468 0.85961 1.46319 1.08330 1.78783 1.06718 1.21440 0.80099 0.73723 0.93563 1.90594 1.55025 1.47940 1.46925 1.19686 0.99628 0.98572 0.88985 1.21008 0.87866 1.50540 0.95714 0.88954 1.24981 0.94797 0.94793 0.98738 1.69896 1.06305 1.50574 1.26818 0.86880 0.80357 0.78517 0.84062 1.20137 1.21142 1.19113 1.20471 0.91197 0.98765 1.05793 0.92397 0.92438 0.87883 0.84238 0.84091 0.90381 0.90460 0.76964 0.93554 0.93966 0.92596 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.90 10.50 -19.40 -0.20 -3.11 16 3 C 0.15 1.56 6.69 -39.22 -0.26 1.30 16 4 C -0.24 -2.30 9.02 -39.37 -0.35 -2.66 16 5 C 0.14 1.45 7.30 -39.44 -0.29 1.16 16 6 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 7 C -0.17 -1.85 9.68 -39.49 -0.38 -2.24 16 8 C -0.03 -0.34 5.25 -104.65 -0.55 -0.88 16 9 C 0.16 2.14 5.80 -5.19 -0.03 2.11 16 10 N -0.75 -11.79 5.55 -61.48 -0.34 -12.13 16 11 C 0.52 11.29 7.82 -10.99 -0.09 11.20 16 12 O -0.53 -13.59 15.46 5.55 0.09 -13.50 16 13 C -0.03 -0.68 4.53 -29.04 -0.13 -0.81 16 14 C -0.51 -15.04 9.48 -34.44 -0.33 -15.37 16 15 H 0.09 3.07 7.00 -52.49 -0.37 2.70 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 18 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 22 C -0.14 -1.52 9.64 -39.42 -0.38 -1.90 16 23 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 24 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.14 1.01 6.30 -52.48 -0.33 0.68 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.40 5.29 8.46 -40.82 -0.35 4.95 16 31 H 0.05 1.03 7.20 -51.93 -0.37 0.66 16 32 H 0.04 0.92 7.57 -51.93 -0.39 0.53 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 302.00 15.07 4.55 4.55 Total: -1.00 -34.36 302.00 -5.54 -39.90 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.88 Total: 1.77 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.90 Total: -5.08 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.43 Total: -39.31 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.12 Total: -16.61 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.36 -5.54 -39.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.045 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds