Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 116.99973 * 2 1 4 4 C 1.38713 * 120.04439 * 359.97438 * 3 2 1 5 5 C 1.38345 * 119.91932 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.99593 * 179.97438 * 5 4 3 7 7 C 1.38512 * 120.00832 * 0.02562 * 5 4 3 8 8 C 1.38209 * 120.08309 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.96160 * 180.02562 * 8 7 5 10 10 N 1.46500 * 109.47372 * 89.99760 * 9 8 7 11 11 C 1.34771 * 120.00594 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00431 * 180.02562 * 11 10 9 14 14 C 1.50701 * 109.47209 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99979 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99782 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99510 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00087 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47018 * 89.99794 * 18 16 14 20 20 H 1.48500 * 109.46824 * 209.99855 * 18 16 14 21 21 H 1.48497 * 109.47148 * 329.99625 * 18 16 14 22 22 C 1.38180 * 120.08200 * 359.97438 * 8 7 5 23 23 H 1.08994 * 109.47485 * 300.00226 * 1 2 3 24 24 H 1.08999 * 109.47051 * 60.00416 * 1 2 3 25 25 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.03903 * 0.27493 * 4 3 2 27 27 H 1.08000 * 119.96166 * 179.97438 * 7 5 4 28 28 H 1.08993 * 109.47553 * 210.00214 * 9 8 7 29 29 H 1.09004 * 109.46761 * 330.00028 * 9 8 7 30 30 H 0.97010 * 119.99548 * 0.02562 * 10 9 8 31 31 H 1.09003 * 109.47579 * 300.00188 * 13 11 10 32 32 H 1.09004 * 109.47122 * 60.00289 * 13 11 10 33 33 H 0.97008 * 119.99913 * 180.02562 * 17 16 14 34 34 H 1.07999 * 120.00105 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3747 -0.0005 5 6 1.9221 3.6060 -0.0011 6 9 1.1887 4.7406 -0.0021 7 6 3.3054 3.6757 -0.0016 8 6 4.0575 2.5161 -0.0011 9 6 5.5624 2.5951 -0.0011 10 7 6.0501 2.6214 1.3801 11 6 7.3733 2.6915 1.6265 12 8 8.1604 2.7333 0.7046 13 6 7.8749 2.7180 3.0472 14 6 9.3798 2.7971 3.0472 15 1 9.9191 2.8258 2.1119 16 6 10.0682 2.8339 4.2414 17 7 11.3815 2.9034 4.2413 18 14 9.1355 2.7849 5.8591 19 1 8.9624 1.3739 6.2881 20 1 9.8999 3.5267 6.8938 21 1 7.8028 3.4154 5.6813 22 6 3.4312 1.2844 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2127 2.3198 0.0035 27 1 3.7971 4.6373 -0.0024 28 1 5.9720 1.7253 -0.5145 29 1 5.8786 3.5028 -0.5153 30 1 5.4206 2.5884 2.1175 31 1 7.4650 3.5874 3.5612 32 1 7.5592 1.8099 3.5610 33 1 11.8659 2.9289 5.0814 34 1 4.0202 0.3792 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -122.906984 kcal Electronic energy + Delta-G solvation = -19140.075106 eV Core-core repulsion = 15758.748380 eV Total energy + Delta-G solvation = -3381.326726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.00953 -41.28875 -40.42321 -38.65555 -35.66403 -34.98758 -32.56158 -31.49675 -31.25150 -28.39923 -27.28483 -24.90647 -23.72174 -22.43921 -21.35899 -19.29303 -19.01857 -18.10899 -17.52418 -17.26250 -17.09263 -17.00174 -16.81197 -16.37957 -16.13564 -16.01585 -15.49085 -14.95369 -14.53779 -14.26290 -14.07439 -13.70191 -13.39269 -13.17645 -13.08825 -12.79354 -12.52060 -12.36966 -12.27458 -11.99212 -11.82949 -11.50967 -10.77477 -10.69425 -10.05149 -9.94735 -9.36425 -8.24346 -6.32683 -0.08601 0.14539 1.41547 1.45560 1.55938 1.86967 2.15084 2.24055 2.40246 2.71327 3.07475 3.09280 3.45524 3.86011 3.90335 4.06051 4.19507 4.29800 4.32719 4.39132 4.46870 4.70691 4.74015 4.78318 4.91591 4.94097 5.05336 5.08912 5.34534 5.47635 5.51366 5.56647 6.26437 6.27456 6.68190 6.87009 7.27620 7.49561 8.93296 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.003674 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.913027 B = 7619.127242 C = 7763.061081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.154 3.846 4 C -0.234 4.234 5 C 0.129 3.871 6 F -0.140 7.140 7 C -0.175 4.175 8 C -0.031 4.031 9 C 0.161 3.839 10 N -0.720 5.720 11 C 0.523 3.477 12 O -0.583 6.583 13 C -0.029 4.029 14 C -0.534 4.534 15 H 0.030 0.970 16 C 0.001 3.999 17 N -0.954 5.954 18 Si 0.961 3.039 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.230 1.230 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.163 0.837 27 H 0.144 0.856 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.413 0.587 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.268 0.732 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.447 -3.450 -6.123 30.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.107 3.893 4 C -0.253 4.253 5 C 0.109 3.891 6 F -0.118 7.118 7 C -0.194 4.194 8 C -0.032 4.032 9 C 0.038 3.962 10 N -0.375 5.375 11 C 0.312 3.688 12 O -0.462 6.462 13 C -0.069 4.069 14 C -0.572 4.572 15 H 0.048 0.952 16 C -0.196 4.196 17 N -0.595 5.595 18 Si 0.782 3.218 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.152 1.152 22 C -0.166 4.166 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.181 0.819 27 H 0.162 0.838 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.250 0.750 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.699 -3.566 -6.701 29.686 hybrid contribution -0.144 0.416 0.722 0.846 sum -28.843 -3.150 -5.979 29.624 Atomic orbital electron populations 1.23445 0.75960 1.06017 1.02601 1.86122 1.23843 1.25746 1.88061 1.18663 0.91768 0.84369 0.94453 1.21355 1.02321 0.90438 1.11233 1.17368 0.88985 0.81794 1.00919 1.91509 1.77260 1.49306 1.93763 1.21079 0.91912 1.00175 1.06266 1.19222 0.94056 0.91981 0.97917 1.20135 0.88644 1.03230 0.84163 1.45966 1.06544 1.76305 1.08644 1.21150 0.81586 0.73661 0.92417 1.90584 1.56889 1.50745 1.47999 1.19614 0.95745 1.00589 0.90909 1.21201 0.91243 1.51082 0.93723 0.95212 1.26146 0.95772 0.93745 1.03898 1.70097 1.08925 1.52067 1.28386 0.85529 0.79937 0.79436 0.76861 1.18658 1.21265 1.15246 1.20534 0.91894 0.98562 1.05600 0.91367 0.91306 0.86057 0.81943 0.83781 0.90676 0.90808 0.75002 0.91166 0.91266 0.92339 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.24 10.50 -92.32 -0.97 -6.21 16 3 C 0.15 2.71 6.69 22.50 0.15 2.86 16 4 C -0.23 -3.73 9.02 22.41 0.20 -3.53 16 5 C 0.13 2.42 7.30 22.36 0.16 2.58 16 6 F -0.14 -2.79 17.27 44.97 0.78 -2.02 16 7 C -0.17 -3.44 9.68 22.33 0.22 -3.23 16 8 C -0.03 -0.64 5.25 -19.89 -0.10 -0.74 16 9 C 0.16 4.20 5.80 85.63 0.50 4.69 16 10 N -0.72 -21.68 5.55 -466.80 -2.59 -24.27 16 11 C 0.52 22.51 7.82 87.66 0.69 23.20 16 12 O -0.58 -31.05 15.46 -3.04 -0.05 -31.10 16 13 C -0.03 -1.31 4.53 29.10 0.13 -1.18 16 14 C -0.53 -32.23 9.48 25.60 0.24 -31.99 16 15 H 0.03 2.11 7.00 -2.91 -0.02 2.09 16 16 C 0.00 0.04 5.47 84.66 0.46 0.50 16 17 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 18 Si 0.96 42.16 27.47 68.60 1.88 44.04 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.23 -8.68 6.54 99.48 0.65 -8.02 16 22 C -0.15 -2.85 9.64 22.37 0.22 -2.63 16 23 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 24 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 25 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.16 1.76 6.30 -2.91 -0.02 1.74 16 27 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.07 2.04 8.08 -2.39 -0.02 2.02 16 29 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 30 H 0.41 9.83 8.46 -92.70 -0.78 9.05 16 31 H 0.07 2.88 7.20 -2.39 -0.02 2.87 16 32 H 0.07 2.80 7.57 -2.39 -0.02 2.78 16 33 H 0.27 15.90 8.31 -92.70 -0.77 15.12 16 34 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -78.48 302.00 3.62 -74.86 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.29 Total: 14.16 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 3.97 Total: -8.25 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.29 Total: -85.49 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.02 Total: -37.31 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Total: -78.48 3.62 -74.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.048 kcal (2) G-P(sol) polarization free energy of solvation -78.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds