Wall clock time and date at job start Mon Mar 30 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45205 * 109.47067 * 2 1 4 4 C 1.34231 * 117.00020 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99639 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99988 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47006 * 180.02562 * 6 4 3 8 8 C 1.38319 * 119.92180 * 265.02186 * 7 6 4 9 9 C 1.38035 * 120.11670 * 179.97438 * 8 7 6 10 10 C 1.39124 * 119.95725 * 359.97438 * 9 8 7 11 11 N 1.39302 * 120.07246 * 179.97438 * 10 9 8 12 12 C 1.36850 * 119.99705 * 180.02562 * 11 10 9 13 13 H 1.08008 * 120.00126 * 359.97438 * 12 11 10 14 14 C 1.38791 * 120.00141 * 180.02562 * 12 11 10 15 15 N 1.31589 * 119.99777 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00229 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46908 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47000 * 119.99784 * 16 14 12 19 19 H 1.48501 * 109.47408 * 240.00283 * 16 14 12 20 20 C 1.39015 * 119.84845 * 359.75025 * 10 9 8 21 21 C 1.38298 * 119.88272 * 0.50342 * 20 10 9 22 22 F 1.35104 * 119.97799 * 179.76723 * 21 20 10 23 23 H 1.09003 * 109.47234 * 59.99783 * 1 2 3 24 24 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46626 * 299.99788 * 1 2 3 26 26 H 1.09007 * 109.46974 * 240.00300 * 2 1 3 27 27 H 1.08995 * 109.47118 * 120.00481 * 2 1 3 28 28 H 1.08998 * 109.47006 * 59.99816 * 6 4 3 29 29 H 1.09003 * 109.46975 * 299.99977 * 6 4 3 30 30 H 1.08001 * 119.93928 * 0.02562 * 8 7 6 31 31 H 1.07995 * 120.02102 * 180.02562 * 9 8 7 32 32 H 0.96997 * 119.99941 * 0.02562 * 11 10 9 33 33 H 0.97004 * 120.00213 * 179.97438 * 15 14 12 34 34 H 1.07994 * 120.05745 * 180.24804 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9375 0.0012 7 6 5.4257 2.8586 0.0010 8 6 6.1202 2.9258 1.1953 9 6 7.4986 2.8534 1.2000 10 6 8.1909 2.7121 0.0015 11 7 9.5820 2.6393 0.0033 12 6 10.2615 2.5008 -1.1765 13 1 9.7191 2.4475 -2.1090 14 6 11.6475 2.4278 -1.1747 15 7 12.3082 2.4923 -0.0386 16 14 12.5749 2.2380 -2.7851 17 1 11.6074 2.1901 -3.9107 18 1 13.4908 3.3925 -2.9678 19 1 13.3635 0.9800 -2.7570 20 6 7.4910 2.6389 -1.1974 21 6 6.1102 2.7174 -1.1950 22 9 5.4283 2.6512 -2.3595 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.5845 3.4693 0.8911 29 1 3.5851 3.4698 -0.8888 30 1 5.5829 3.0343 2.1259 31 1 8.0393 2.9057 2.1334 32 1 10.0691 2.6869 0.8408 33 1 13.2769 2.4409 -0.0373 34 1 8.0247 2.5252 -2.1293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:58 Heat of formation + Delta-G solvation = -116.142888 kcal Electronic energy + Delta-G solvation = -19521.664562 eV Core-core repulsion = 16140.631149 eV Total energy + Delta-G solvation = -3381.033413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.14161 -40.19047 -38.35951 -36.46953 -35.21101 -32.57190 -31.80104 -30.49442 -29.58526 -26.67623 -24.62933 -23.18640 -21.94902 -21.31090 -20.06751 -17.98055 -17.46075 -17.17800 -16.50718 -16.04368 -15.33934 -15.11624 -14.76916 -14.59795 -14.13487 -13.99623 -13.71065 -13.17189 -12.92808 -12.84982 -12.48380 -12.23816 -12.08085 -11.75966 -11.62935 -11.49811 -11.23814 -10.89021 -10.71024 -10.46575 -10.40148 -10.27618 -10.01273 -10.00184 -8.80878 -7.90111 -6.86551 -6.69851 -3.87442 2.17069 2.28200 2.55142 2.95916 3.12153 3.13017 3.16729 3.96250 4.46819 4.83738 4.87578 4.92605 5.01685 5.11171 5.17597 5.24759 5.37454 5.48703 5.65269 5.68487 5.76693 5.79256 5.84452 6.15994 6.40358 6.60587 6.70325 6.94032 7.03156 7.17158 7.29957 7.36724 7.58892 7.95049 8.09136 8.62530 9.18252 9.38722 10.46102 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036443 B = 0.003887 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.134444 B = 7201.851415 C = 7472.544553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.367 6.367 4 C 0.454 3.546 5 O -0.493 6.493 6 C -0.042 4.042 7 C -0.254 4.254 8 C -0.018 4.018 9 C -0.245 4.245 10 C 0.230 3.770 11 N -0.546 5.546 12 C -0.304 4.304 13 H 0.105 0.895 14 C 0.022 3.978 15 N -0.887 5.887 16 Si 0.934 3.066 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.260 4.260 21 C 0.171 3.829 22 F -0.155 7.155 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.402 0.598 33 H 0.277 0.723 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -0.297 1.258 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.285 6.285 4 C 0.296 3.704 5 O -0.379 6.379 6 C -0.080 4.080 7 C -0.259 4.259 8 C -0.038 4.038 9 C -0.269 4.269 10 C 0.105 3.895 11 N -0.145 5.145 12 C -0.433 4.433 13 H 0.123 0.877 14 C -0.182 4.182 15 N -0.523 5.523 16 Si 0.760 3.240 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.286 4.286 21 C 0.151 3.849 22 F -0.134 7.134 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.238 0.762 33 H 0.087 0.913 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.245 -0.668 1.086 15.299 hybrid contribution 0.755 -0.374 -0.562 1.012 sum -14.491 -1.042 0.524 14.538 Atomic orbital electron populations 1.21792 0.92989 1.02668 1.03333 1.22938 0.95010 0.81035 1.02462 1.86516 1.25524 1.31748 1.84744 1.24335 0.79827 0.93751 0.72501 1.90679 1.60210 1.43041 1.43953 1.19885 0.93112 0.89886 1.05096 1.18296 0.91916 1.22917 0.92755 1.20126 0.93199 0.95201 0.95283 1.20221 0.93946 1.16771 0.95994 1.17481 0.84159 0.95044 0.92784 1.41103 1.01356 1.62430 1.09627 1.19861 0.89569 1.46869 0.87043 0.87713 1.25354 0.96739 0.96950 0.99131 1.69687 1.09179 1.47659 1.25788 0.85724 0.79431 0.78141 0.80708 1.18989 1.20384 1.20393 1.20184 0.91367 1.18420 0.98584 1.17095 0.89429 0.98619 0.79786 1.91371 1.80380 1.93805 1.47854 0.91590 0.90545 0.91613 0.91474 0.91483 0.87798 0.88129 0.87154 0.87193 0.76226 0.91333 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.37 -5.09 10.22 -39.26 -0.40 -5.49 16 4 C 0.45 7.38 7.95 36.00 0.29 7.67 16 5 O -0.49 -9.83 15.78 -18.75 -0.30 -10.13 16 6 C -0.04 -0.62 5.71 -29.04 -0.17 -0.79 16 7 C -0.25 -4.68 4.39 -104.49 -0.46 -5.14 16 8 C -0.02 -0.33 9.67 -39.63 -0.38 -0.71 16 9 C -0.25 -4.89 9.90 -39.33 -0.39 -5.28 16 10 C 0.23 5.20 6.62 -83.85 -0.55 4.65 16 11 N -0.55 -13.32 5.43 -9.60 -0.05 -13.38 16 12 C -0.30 -7.76 9.56 -15.11 -0.14 -7.90 16 13 H 0.11 2.62 5.68 -52.48 -0.30 2.32 16 14 C 0.02 0.56 5.50 -17.45 -0.10 0.47 16 15 N -0.89 -23.28 13.05 55.49 0.72 -22.55 16 16 Si 0.93 19.71 29.55 -169.99 -5.02 14.69 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 C -0.26 -5.85 9.28 -39.27 -0.36 -6.22 16 21 C 0.17 3.55 7.24 -39.45 -0.29 3.27 16 22 F -0.16 -3.12 16.56 2.25 0.04 -3.08 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 29 H 0.10 1.35 7.78 -51.93 -0.40 0.95 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.40 9.82 7.90 -40.82 -0.32 9.50 16 33 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.13 2.87 5.96 -52.49 -0.31 2.56 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -28.74 304.70 -6.21 -34.95 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.85 Total: 10.29 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.94 Total: -9.89 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.67 Total: -35.93 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.70 Total: -15.62 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.74 -6.21 -34.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.189 kcal (2) G-P(sol) polarization free energy of solvation -28.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds