Wall clock time and date at job start Mon Mar 30 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45205 * 109.47067 * 2 1 4 4 C 1.34231 * 117.00020 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99639 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99988 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47006 * 180.02562 * 6 4 3 8 8 C 1.38319 * 119.92180 * 265.02186 * 7 6 4 9 9 C 1.38035 * 120.11670 * 179.97438 * 8 7 6 10 10 C 1.39124 * 119.95725 * 359.97438 * 9 8 7 11 11 N 1.39302 * 120.07246 * 179.97438 * 10 9 8 12 12 C 1.36850 * 119.99705 * 180.02562 * 11 10 9 13 13 H 1.08008 * 120.00126 * 359.97438 * 12 11 10 14 14 C 1.38791 * 120.00141 * 180.02562 * 12 11 10 15 15 N 1.31589 * 119.99777 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00229 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46908 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47000 * 119.99784 * 16 14 12 19 19 H 1.48501 * 109.47408 * 240.00283 * 16 14 12 20 20 C 1.39015 * 119.84845 * 359.75025 * 10 9 8 21 21 C 1.38298 * 119.88272 * 0.50342 * 20 10 9 22 22 F 1.35104 * 119.97799 * 179.76723 * 21 20 10 23 23 H 1.09003 * 109.47234 * 59.99783 * 1 2 3 24 24 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46626 * 299.99788 * 1 2 3 26 26 H 1.09007 * 109.46974 * 240.00300 * 2 1 3 27 27 H 1.08995 * 109.47118 * 120.00481 * 2 1 3 28 28 H 1.08998 * 109.47006 * 59.99816 * 6 4 3 29 29 H 1.09003 * 109.46975 * 299.99977 * 6 4 3 30 30 H 1.08001 * 119.93928 * 0.02562 * 8 7 6 31 31 H 1.07995 * 120.02102 * 180.02562 * 9 8 7 32 32 H 0.96997 * 119.99941 * 0.02562 * 11 10 9 33 33 H 0.97004 * 120.00213 * 179.97438 * 15 14 12 34 34 H 1.07994 * 120.05745 * 180.24804 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9375 0.0012 7 6 5.4257 2.8586 0.0010 8 6 6.1202 2.9258 1.1953 9 6 7.4986 2.8534 1.2000 10 6 8.1909 2.7121 0.0015 11 7 9.5820 2.6393 0.0033 12 6 10.2615 2.5008 -1.1765 13 1 9.7191 2.4475 -2.1090 14 6 11.6475 2.4278 -1.1747 15 7 12.3082 2.4923 -0.0386 16 14 12.5749 2.2380 -2.7851 17 1 11.6074 2.1901 -3.9107 18 1 13.4908 3.3925 -2.9678 19 1 13.3635 0.9800 -2.7570 20 6 7.4910 2.6389 -1.1974 21 6 6.1102 2.7174 -1.1950 22 9 5.4283 2.6512 -2.3595 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.5845 3.4693 0.8911 29 1 3.5851 3.4698 -0.8888 30 1 5.5829 3.0343 2.1259 31 1 8.0393 2.9057 2.1334 32 1 10.0691 2.6869 0.8408 33 1 13.2769 2.4409 -0.0373 34 1 8.0247 2.5252 -2.1293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:58 Heat of formation + Delta-G solvation = -131.829407 kcal Electronic energy + Delta-G solvation = -19522.344780 eV Core-core repulsion = 16140.631149 eV Total energy + Delta-G solvation = -3381.713631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.78621 -41.44604 -39.99457 -37.74868 -36.85413 -34.22949 -32.82833 -31.89682 -31.22999 -28.25023 -26.32980 -24.17405 -23.58594 -22.66521 -21.48574 -19.78695 -18.85135 -18.68310 -17.67344 -17.31218 -16.98835 -16.74376 -16.39961 -16.13802 -15.74410 -15.37540 -15.16077 -14.46267 -14.25555 -14.00050 -13.94169 -13.57990 -13.54387 -13.10510 -12.91494 -12.75134 -12.48996 -12.47217 -12.32333 -12.09517 -11.85206 -11.71224 -11.47966 -11.42597 -10.58287 -9.54580 -8.59607 -8.54206 -5.79534 0.55759 0.67075 1.29185 1.39086 1.41955 1.52148 1.85626 2.23564 2.79467 3.21187 3.27622 3.65982 3.83543 4.01751 4.05390 4.08580 4.16418 4.37410 4.38496 4.59611 4.66444 4.78994 4.89295 4.95658 5.01765 5.17965 5.24790 5.34723 5.41339 5.53623 5.65924 5.71861 5.80020 6.30642 6.76573 6.85743 7.40128 7.56107 8.63843 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036443 B = 0.003887 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.134444 B = 7201.851415 C = 7472.544553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.361 6.361 4 C 0.459 3.541 5 O -0.539 6.539 6 C -0.045 4.045 7 C -0.232 4.232 8 C -0.013 4.013 9 C -0.246 4.246 10 C 0.218 3.782 11 N -0.574 5.574 12 C -0.323 4.323 13 H 0.099 0.901 14 C -0.025 4.025 15 N -0.925 5.925 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.276 1.276 20 C -0.284 4.284 21 C 0.156 3.844 22 F -0.153 7.153 23 H 0.068 0.932 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.119 0.881 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.397 0.603 33 H 0.277 0.723 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 0.119 1.944 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.278 6.278 4 C 0.303 3.697 5 O -0.428 6.428 6 C -0.082 4.082 7 C -0.237 4.237 8 C -0.032 4.032 9 C -0.270 4.270 10 C 0.098 3.902 11 N -0.178 5.178 12 C -0.452 4.452 13 H 0.116 0.884 14 C -0.224 4.224 15 N -0.564 5.564 16 Si 0.819 3.181 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.202 1.202 20 C -0.310 4.310 21 C 0.136 3.864 22 F -0.132 7.132 23 H 0.087 0.913 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.167 0.833 29 H 0.137 0.863 30 H 0.175 0.825 31 H 0.145 0.855 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.393 -0.237 1.761 18.478 hybrid contribution 1.261 -0.506 -0.706 1.531 sum -17.132 -0.743 1.054 17.180 Atomic orbital electron populations 1.21807 0.90013 1.04286 1.03879 1.23254 0.97313 0.79709 1.02081 1.86507 1.24024 1.33256 1.83995 1.24476 0.80356 0.93617 0.71256 1.90684 1.61301 1.44510 1.46304 1.20060 0.90083 0.89763 1.08247 1.18829 0.94430 1.18681 0.91785 1.20672 0.92469 0.93062 0.96994 1.20599 0.95143 1.15596 0.95681 1.17892 0.83943 0.94450 0.93890 1.41010 1.01810 1.66013 1.08935 1.20000 0.90178 1.47617 0.87440 0.88367 1.26127 0.97211 0.97022 1.02069 1.69773 1.09218 1.50044 1.27353 0.84807 0.78071 0.78027 0.77182 1.18721 1.19890 1.20190 1.20269 0.92529 1.19930 0.98247 1.17317 0.89018 0.99168 0.80913 1.91371 1.80080 1.93821 1.47944 0.91252 0.88423 0.90811 0.92325 0.91576 0.83311 0.86305 0.82491 0.85469 0.76843 0.91379 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 10.29 71.98 0.74 -1.07 16 2 C 0.05 1.03 6.19 71.98 0.45 1.47 16 3 O -0.36 -8.86 10.22 -51.43 -0.53 -9.39 16 4 C 0.46 13.52 7.95 71.23 0.57 14.08 16 5 O -0.54 -20.54 15.78 21.95 0.35 -20.19 16 6 C -0.04 -1.11 5.71 29.10 0.17 -0.95 16 7 C -0.23 -7.86 4.39 -19.78 -0.09 -7.95 16 8 C -0.01 -0.42 9.67 22.24 0.21 -0.20 16 9 C -0.25 -9.43 9.90 22.43 0.22 -9.21 16 10 C 0.22 10.02 6.62 38.35 0.25 10.28 16 11 N -0.57 -29.20 5.43 -184.30 -1.00 -30.21 16 12 C -0.32 -17.27 9.56 84.04 0.80 -16.47 16 13 H 0.10 5.19 5.68 -2.91 -0.02 5.18 16 14 C -0.02 -1.30 5.50 84.86 0.47 -0.84 16 15 N -0.93 -50.46 13.05 21.65 0.28 -50.17 16 16 Si 1.00 41.75 29.55 68.60 2.03 43.77 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 20 C -0.28 -13.05 9.28 22.47 0.21 -12.84 16 21 C 0.16 6.32 7.24 22.35 0.16 6.49 16 22 F -0.15 -6.03 16.56 44.97 0.74 -5.28 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.07 1.37 8.13 -2.39 -0.02 1.36 16 28 H 0.15 2.48 8.05 -2.39 -0.02 2.46 16 29 H 0.12 2.65 7.78 -2.39 -0.02 2.64 16 30 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.40 20.30 7.90 -92.71 -0.73 19.57 16 33 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.11 5.28 5.96 -2.91 -0.02 5.26 16 Total: -1.00 -64.54 304.70 6.44 -58.10 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.40 Total: 30.57 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.16 Total: -17.20 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -0.72 Total: -80.38 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.18 Total: -29.58 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.74 Total: -5.28 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -64.54 6.44 -58.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.728 kcal (2) G-P(sol) polarization free energy of solvation -64.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds