Wall clock time and date at job start Mon Mar 30 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37094 * 120.00101 * 2 1 4 4 H 1.08004 * 120.00287 * 202.40364 * 3 2 1 5 5 C 1.38951 * 120.00205 * 22.41077 * 3 2 1 6 6 N 1.31406 * 119.99833 * 11.58893 * 5 3 2 7 7 Si 1.86800 * 120.00007 * 191.59110 * 5 3 2 8 8 H 1.48500 * 109.47106 * 90.00098 * 7 5 3 9 9 H 1.48502 * 109.46974 * 209.99739 * 7 5 3 10 10 H 1.48493 * 109.47392 * 329.99608 * 7 5 3 11 11 C 1.34774 * 119.99881 * 179.97438 * 2 1 3 12 12 O 1.21294 * 120.00220 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00131 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.47159 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.46887 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46887 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46780 * 179.97438 * 16 15 14 18 18 C 1.33386 * 125.20483 * 90.00097 * 17 16 15 19 19 C 1.38418 * 114.92516 * 179.97438 * 18 17 16 20 20 C 1.33393 * 114.91958 * 359.97438 * 19 18 17 21 21 S 1.75881 * 125.20406 * 269.69153 * 17 16 15 22 22 H 1.09007 * 109.47186 * 272.16109 * 1 2 3 23 23 H 1.09004 * 109.47077 * 32.15759 * 1 2 3 24 24 H 1.08992 * 109.47160 * 152.15497 * 1 2 3 25 25 H 0.97001 * 120.00344 * 180.02562 * 6 5 3 26 26 H 1.08997 * 109.47177 * 59.99283 * 13 11 2 27 27 H 1.09004 * 109.46891 * 300.00274 * 13 11 2 28 28 H 1.09002 * 109.47172 * 59.99914 * 14 13 11 29 29 H 1.08999 * 109.46893 * 299.99767 * 14 13 11 30 30 H 1.08997 * 109.47448 * 59.99156 * 15 14 13 31 31 H 1.09004 * 109.46891 * 299.99981 * 15 14 13 32 32 H 1.08998 * 109.47380 * 60.00222 * 16 15 14 33 33 H 1.08999 * 109.46893 * 299.99602 * 16 15 14 34 34 H 1.08005 * 122.53747 * 359.94788 * 18 17 16 35 35 H 1.07997 * 122.54462 * 180.02562 * 19 18 17 36 36 H 1.07997 * 125.20548 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2226 -0.3565 5 6 1.5345 2.3452 0.4588 6 7 0.3897 2.2707 1.0996 7 14 2.3338 4.0077 0.1645 8 1 1.8583 4.5638 -1.1277 9 1 1.9689 4.9343 1.2662 10 1 3.8093 3.8469 0.1213 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0018 15 6 1.6145 -4.9602 0.0012 16 6 2.6087 -6.1232 0.0031 17 6 1.8551 -7.4282 0.0031 18 6 1.4719 -8.0949 -1.0868 19 6 0.7910 -9.2745 -0.8398 20 6 0.6218 -9.5661 0.4508 21 16 1.3531 -8.3092 1.4402 22 1 -0.3634 0.0388 1.0270 23 1 -0.3633 0.8700 -0.5470 24 1 -0.3633 -0.9086 -0.4800 25 1 -0.0406 3.0791 1.4195 26 1 0.7589 -2.5302 -0.8896 27 1 0.7583 -2.5298 0.8903 28 1 3.0056 -3.5771 0.8923 29 1 3.0069 -3.5779 -0.8877 30 1 0.9887 -5.0181 -0.8894 31 1 0.9868 -5.0178 0.8905 32 1 3.2340 -6.0652 0.8940 33 1 3.2366 -6.0658 -0.8860 34 1 1.6769 -7.7409 -2.0864 35 1 0.4253 -9.9110 -1.6319 36 1 0.1165 -10.4419 0.8302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177488624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:12 Heat of formation + Delta-G solvation = -16.296762 kcal Electronic energy + Delta-G solvation = -17204.537399 eV Core-core repulsion = 14394.046815 eV Total energy + Delta-G solvation = -2810.490584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.53378 -38.09206 -35.39739 -34.47626 -31.83354 -31.25140 -28.18783 -26.27578 -25.19370 -23.98110 -22.58069 -20.94470 -19.37126 -18.61899 -17.10968 -16.81156 -15.87294 -15.69704 -15.35616 -14.56711 -14.14620 -14.04843 -13.52336 -13.24411 -13.04523 -12.67106 -12.56150 -12.16048 -11.92100 -11.56291 -11.39334 -11.29118 -11.02219 -10.98737 -10.85351 -10.71979 -10.69544 -10.31569 -10.27478 -10.12363 -8.98534 -8.74891 -8.61385 -8.30182 -7.62908 -6.26438 -3.83006 0.87336 1.50814 1.88244 2.61382 3.18901 3.27085 3.32974 3.97724 4.17550 4.60026 4.89040 4.94250 5.03801 5.17347 5.23203 5.29656 5.41806 5.60538 5.62604 5.76433 5.86526 5.93584 6.06557 6.09778 6.19165 6.20475 6.21828 6.37939 6.48592 6.63457 6.76198 6.93264 7.27136 7.60783 8.19076 8.54574 9.24785 9.49600 10.06027 10.77322 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.053419 B = 0.002917 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.031721 B = 9597.265663 C = 9745.844566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.098 0.902 5 C 0.028 3.972 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.445 3.555 12 O -0.593 6.593 13 C -0.129 4.129 14 C -0.098 4.098 15 C -0.113 4.113 16 C -0.052 4.052 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.131 4.131 20 C -0.225 4.225 21 S 0.092 5.908 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.026 0.974 25 H 0.266 0.734 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -19.579 -2.025 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.234 3.766 12 O -0.479 6.479 13 C -0.169 4.169 14 C -0.136 4.136 15 C -0.151 4.151 16 C -0.092 4.092 17 C -0.276 4.276 18 C -0.180 4.180 19 C -0.162 4.162 20 C -0.360 4.360 21 S 0.355 5.645 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.354 -19.196 -0.379 19.343 hybrid contribution -0.209 0.592 -1.534 1.657 sum -2.563 -18.604 -1.913 18.877 Atomic orbital electron populations 1.21485 0.81219 0.98704 1.01616 1.43631 1.05515 1.04913 1.62952 1.19672 0.99433 0.84008 1.40201 0.88468 1.25335 0.96569 1.00031 0.95502 1.70000 1.17459 1.29133 1.35948 0.85925 0.79647 0.81329 0.77796 1.20438 1.20982 1.19408 1.20157 0.88092 0.85009 0.83377 1.90497 1.14136 1.87323 1.55910 1.21523 0.98865 0.94028 1.02508 1.21271 0.97551 0.91484 1.03328 1.21654 0.97712 0.93404 1.02355 1.20252 0.96942 0.88372 1.03606 1.24677 1.05954 1.01594 0.95344 1.20144 1.02400 0.95971 0.99484 1.20167 1.01577 0.98067 0.96353 1.25572 1.09241 1.04233 0.96946 1.84365 1.54102 1.15924 1.10122 0.92508 0.91442 0.95507 0.92361 0.90738 0.90545 0.91446 0.91473 0.91761 0.91908 0.90595 0.89768 0.84317 0.84536 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.58 8.52 59.85 0.51 3.09 16 2 N -0.45 -11.85 3.02 -122.19 -0.37 -12.22 16 3 C -0.31 -8.72 9.29 -14.93 -0.14 -8.86 16 4 H 0.10 2.91 7.41 -52.48 -0.39 2.52 16 5 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 6 N -0.89 -24.03 10.62 55.50 0.59 -23.44 16 7 Si 0.93 21.14 29.57 -169.99 -5.03 16.11 16 8 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.45 11.02 7.63 -10.99 -0.08 10.93 16 12 O -0.59 -16.67 15.67 5.55 0.09 -16.58 16 13 C -0.13 -2.35 4.22 -27.88 -0.12 -2.47 16 14 C -0.10 -1.56 4.50 -26.73 -0.12 -1.68 16 15 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 16 C -0.05 -0.58 5.71 -27.88 -0.16 -0.74 16 17 C -0.16 -1.73 5.76 -36.00 -0.21 -1.94 16 18 C -0.15 -1.53 10.05 -41.21 -0.41 -1.94 16 19 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 20 C -0.22 -2.04 11.23 29.04 0.33 -1.71 16 21 S 0.09 0.94 23.33 -107.50 -2.51 -1.57 16 22 H 0.06 1.34 7.54 -51.92 -0.39 0.95 16 23 H 0.07 1.61 7.06 -51.93 -0.37 1.24 16 24 H 0.03 0.50 6.36 -51.93 -0.33 0.17 16 25 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 26 H 0.07 1.22 7.41 -51.93 -0.38 0.84 16 27 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 28 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 29 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -31.50 316.05 -8.74 -40.24 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.22 Total: 0.51 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.05 Total: -7.80 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.22 Total: -35.66 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.50 -8.74 -40.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177488624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.942 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds