Wall clock time and date at job start Mon Mar 30 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37094 * 120.00101 * 2 1 4 4 H 1.08004 * 120.00287 * 202.40364 * 3 2 1 5 5 C 1.38951 * 120.00205 * 22.41077 * 3 2 1 6 6 N 1.31406 * 119.99833 * 11.58893 * 5 3 2 7 7 Si 1.86800 * 120.00007 * 191.59110 * 5 3 2 8 8 H 1.48500 * 109.47106 * 90.00098 * 7 5 3 9 9 H 1.48502 * 109.46974 * 209.99739 * 7 5 3 10 10 H 1.48493 * 109.47392 * 329.99608 * 7 5 3 11 11 C 1.34774 * 119.99881 * 179.97438 * 2 1 3 12 12 O 1.21294 * 120.00220 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00131 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.47159 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.46887 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46887 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46780 * 179.97438 * 16 15 14 18 18 C 1.33386 * 125.20483 * 90.00097 * 17 16 15 19 19 C 1.38418 * 114.92516 * 179.97438 * 18 17 16 20 20 C 1.33393 * 114.91958 * 359.97438 * 19 18 17 21 21 S 1.75881 * 125.20406 * 269.69153 * 17 16 15 22 22 H 1.09007 * 109.47186 * 272.16109 * 1 2 3 23 23 H 1.09004 * 109.47077 * 32.15759 * 1 2 3 24 24 H 1.08992 * 109.47160 * 152.15497 * 1 2 3 25 25 H 0.97001 * 120.00344 * 180.02562 * 6 5 3 26 26 H 1.08997 * 109.47177 * 59.99283 * 13 11 2 27 27 H 1.09004 * 109.46891 * 300.00274 * 13 11 2 28 28 H 1.09002 * 109.47172 * 59.99914 * 14 13 11 29 29 H 1.08999 * 109.46893 * 299.99767 * 14 13 11 30 30 H 1.08997 * 109.47448 * 59.99156 * 15 14 13 31 31 H 1.09004 * 109.46891 * 299.99981 * 15 14 13 32 32 H 1.08998 * 109.47380 * 60.00222 * 16 15 14 33 33 H 1.08999 * 109.46893 * 299.99602 * 16 15 14 34 34 H 1.08005 * 122.53747 * 359.94788 * 18 17 16 35 35 H 1.07997 * 122.54462 * 180.02562 * 19 18 17 36 36 H 1.07997 * 125.20548 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2226 -0.3565 5 6 1.5345 2.3452 0.4588 6 7 0.3897 2.2707 1.0996 7 14 2.3338 4.0077 0.1645 8 1 1.8583 4.5638 -1.1277 9 1 1.9689 4.9343 1.2662 10 1 3.8093 3.8469 0.1213 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0018 15 6 1.6145 -4.9602 0.0012 16 6 2.6087 -6.1232 0.0031 17 6 1.8551 -7.4282 0.0031 18 6 1.4719 -8.0949 -1.0868 19 6 0.7910 -9.2745 -0.8398 20 6 0.6218 -9.5661 0.4508 21 16 1.3531 -8.3092 1.4402 22 1 -0.3634 0.0388 1.0270 23 1 -0.3633 0.8700 -0.5470 24 1 -0.3633 -0.9086 -0.4800 25 1 -0.0406 3.0791 1.4195 26 1 0.7589 -2.5302 -0.8896 27 1 0.7583 -2.5298 0.8903 28 1 3.0056 -3.5771 0.8923 29 1 3.0069 -3.5779 -0.8877 30 1 0.9887 -5.0181 -0.8894 31 1 0.9868 -5.0178 0.8905 32 1 3.2340 -6.0652 0.8940 33 1 3.2366 -6.0658 -0.8860 34 1 1.6769 -7.7409 -2.0864 35 1 0.4253 -9.9110 -1.6319 36 1 0.1165 -10.4419 0.8302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177488624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:12 Heat of formation + Delta-G solvation = -33.520782 kcal Electronic energy + Delta-G solvation = -17205.284289 eV Core-core repulsion = 14394.046815 eV Total energy + Delta-G solvation = -2811.237473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39793 -38.89594 -36.88396 -36.13073 -33.70226 -32.59612 -29.33864 -28.07294 -26.67560 -25.43152 -23.60087 -22.09840 -20.47033 -20.05065 -18.87514 -17.89540 -17.76248 -16.87222 -16.46524 -16.32273 -15.89797 -15.59016 -14.66111 -14.35271 -14.18236 -13.99583 -13.62091 -13.41748 -13.31747 -13.09773 -13.01692 -12.86936 -12.66513 -12.42685 -12.21014 -12.08663 -11.98743 -11.93164 -11.59988 -11.39001 -11.01442 -10.31854 -9.68355 -9.49405 -9.36790 -8.32330 -5.98187 0.13693 0.76984 1.16030 1.36952 1.39813 1.52398 1.89812 2.06283 2.28207 3.09574 3.12009 3.77611 4.04122 4.05138 4.13539 4.29226 4.37403 4.50213 4.62324 4.66010 4.74751 4.82761 4.85423 4.92977 4.97467 5.06620 5.16452 5.26278 5.38663 5.40751 5.44382 5.46356 5.50767 5.66490 6.10693 6.49987 7.18194 7.50381 8.06481 8.69250 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.053419 B = 0.002917 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.031721 B = 9597.265663 C = 9745.844566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.469 5.469 3 C -0.346 4.346 4 H 0.069 0.931 5 C -0.005 4.005 6 N -0.898 5.898 7 Si 0.990 3.010 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.277 1.277 11 C 0.432 3.568 12 O -0.638 6.638 13 C -0.118 4.118 14 C -0.091 4.091 15 C -0.100 4.100 16 C -0.049 4.049 17 C -0.177 4.177 18 C -0.151 4.151 19 C -0.140 4.140 20 C -0.220 4.220 21 S 0.070 5.930 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.273 0.727 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 -20.645 -2.616 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.188 5.188 3 C -0.474 4.474 4 H 0.087 0.913 5 C -0.206 4.206 6 N -0.537 5.537 7 Si 0.813 3.187 8 H -0.190 1.190 9 H -0.197 1.197 10 H -0.202 1.202 11 C 0.223 3.777 12 O -0.526 6.526 13 C -0.158 4.158 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.088 4.088 17 C -0.294 4.294 18 C -0.181 4.181 19 C -0.170 4.170 20 C -0.355 4.355 21 S 0.332 5.668 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.786 -20.274 -0.966 20.647 hybrid contribution 0.219 0.874 -1.341 1.615 sum -3.567 -19.399 -2.307 19.859 Atomic orbital electron populations 1.21442 0.79275 1.00187 1.01110 1.43941 1.06874 1.04862 1.63136 1.19627 0.99161 0.86106 1.42548 0.91304 1.26097 0.97067 1.02879 0.94573 1.70072 1.17917 1.30337 1.35379 0.84987 0.78171 0.77024 0.78473 1.18968 1.19739 1.20208 1.21323 0.88065 0.86687 0.81659 1.90457 1.16395 1.88254 1.57475 1.21530 0.99016 0.90750 1.04461 1.21197 0.97118 0.92674 1.01944 1.21512 0.97579 0.91607 1.03071 1.20157 0.96689 0.88287 1.03701 1.24642 1.07121 1.01858 0.95807 1.20427 1.01719 0.96120 0.99821 1.20454 1.01426 0.98070 0.97071 1.25904 1.08564 1.04301 0.96708 1.84433 1.54705 1.16906 1.10710 0.93668 0.93084 0.91044 0.91745 0.87981 0.88905 0.93332 0.92539 0.90524 0.91579 0.91057 0.89284 0.83194 0.82268 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.49 8.52 127.77 1.09 6.58 16 2 N -0.47 -24.93 3.02 -658.88 -1.99 -26.91 16 3 C -0.35 -20.31 9.29 84.04 0.78 -19.53 16 4 H 0.07 4.32 7.41 -2.91 -0.02 4.30 16 5 C 0.00 -0.26 5.11 84.93 0.43 0.17 16 6 N -0.90 -48.48 10.62 21.66 0.23 -48.25 16 7 Si 0.99 43.38 29.57 68.60 2.03 45.41 16 8 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 C 0.43 21.61 7.63 87.66 0.67 22.28 16 12 O -0.64 -37.04 15.67 -3.07 -0.05 -37.09 16 13 C -0.12 -4.12 4.22 29.85 0.13 -3.99 16 14 C -0.09 -2.84 4.50 30.59 0.14 -2.70 16 15 C -0.10 -2.29 5.20 30.59 0.16 -2.13 16 16 C -0.05 -1.03 5.71 29.85 0.17 -0.86 16 17 C -0.18 -3.59 5.76 24.59 0.14 -3.45 16 18 C -0.15 -2.73 10.05 21.21 0.21 -2.52 16 19 C -0.14 -2.21 10.18 21.22 0.22 -1.99 16 20 C -0.22 -3.47 11.23 66.72 0.75 -2.72 16 21 S 0.07 1.33 23.33 -56.49 -1.32 0.02 16 22 H 0.04 2.10 7.54 -2.38 -0.02 2.08 16 23 H 0.05 2.41 7.06 -2.39 -0.02 2.39 16 24 H 0.07 2.49 6.36 -2.39 -0.02 2.48 16 25 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 26 H 0.10 3.03 7.41 -2.39 -0.02 3.01 16 27 H 0.09 2.98 8.11 -2.38 -0.02 2.96 16 28 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 29 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -69.27 316.05 4.84 -64.42 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.06 Total: 13.28 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 4.89 Total: -10.86 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.76 Total: -75.17 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.05 Total: -37.09 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.02 kcal Total: -69.27 4.84 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177488624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.904 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds