Wall clock time and date at job start Mon Mar 30 2020 00:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 O 1.42899 * 109.47279 * 120.00086 * 2 1 3 5 5 C 1.52999 * 109.47251 * 240.00384 * 2 1 3 6 6 C 1.50702 * 109.47343 * 175.00043 * 5 2 1 7 7 O 1.21291 * 119.99541 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00212 * 179.97438 * 6 5 2 9 9 C 1.40008 * 120.00169 * 175.67983 * 8 6 5 10 10 C 1.39370 * 119.91400 * 215.20751 * 9 8 6 11 11 C 1.38360 * 120.46915 * 179.97438 * 10 9 8 12 12 C 1.38012 * 120.28918 * 0.04196 * 11 10 9 13 13 F 1.35106 * 120.09270 * 179.97438 * 12 11 10 14 14 C 1.41002 * 119.81341 * 359.97438 * 12 11 10 15 15 C 1.41294 * 120.23025 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00566 * 324.96658 * 15 14 12 17 17 C 1.39925 * 119.99741 * 145.24166 * 15 14 12 18 18 N 1.30851 * 120.00025 * 4.43968 * 17 15 14 19 19 Si 1.86797 * 119.99893 * 184.44847 * 17 15 14 20 20 H 1.48503 * 109.47558 * 59.99515 * 19 17 15 21 21 H 1.48502 * 109.47391 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46808 * 299.99368 * 19 17 15 23 23 C 1.38146 * 119.90893 * 35.48948 * 9 8 6 24 24 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47388 * 299.99769 * 1 2 3 26 26 H 1.08999 * 109.47081 * 60.00183 * 1 2 3 27 27 H 0.96700 * 113.99881 * 60.00198 * 4 2 1 28 28 H 1.08997 * 109.47777 * 54.99790 * 5 2 1 29 29 H 1.09008 * 109.46958 * 294.99928 * 5 2 1 30 30 H 0.97003 * 120.00347 * 355.68848 * 8 6 5 31 31 H 1.07992 * 119.76120 * 359.97438 * 10 9 8 32 32 H 1.08001 * 119.86036 * 180.02562 * 11 10 9 33 33 H 0.97003 * 119.99529 * 179.97438 * 18 17 15 34 34 H 1.08003 * 120.14229 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5419 -0.6148 -1.3128 7 8 4.1450 -0.0203 -0.4444 8 7 4.2150 -1.1803 -2.3343 9 6 5.5998 -1.0052 -2.4424 10 6 6.1905 -0.8959 -3.7000 11 6 7.5578 -0.7220 -3.8202 12 6 8.3528 -0.6558 -2.6940 13 9 9.6876 -0.4865 -2.8160 14 6 7.7679 -0.7654 -1.4157 15 6 8.5735 -0.6994 -0.2568 16 1 9.5694 -1.1170 -0.2668 17 6 8.0788 -0.0980 0.9058 18 7 6.8413 0.3252 0.9477 19 14 9.1850 0.1009 2.3978 20 1 10.3602 0.9333 2.0354 21 1 8.4281 0.7629 3.4905 22 1 9.6463 -1.2351 2.8535 23 6 6.3779 -0.9471 -1.3024 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5952 1.2328 28 1 1.6054 -0.2617 -2.1370 29 1 1.7516 -1.7715 -1.2057 30 1 3.7399 -1.7086 -2.9948 31 1 5.5765 -0.9472 -4.5869 32 1 8.0052 -0.6380 -4.7996 33 1 6.4983 0.7418 1.7538 34 1 5.9202 -1.0369 -0.3283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181353441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:40 Heat of formation + Delta-G solvation = -116.124907 kcal Electronic energy + Delta-G solvation = -20248.905614 eV Core-core repulsion = 16867.872981 eV Total energy + Delta-G solvation = -3381.032633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.13378 -39.62191 -37.59436 -36.46981 -34.13135 -33.04066 -31.84672 -29.65564 -28.84910 -26.97143 -25.26761 -22.33963 -21.45750 -20.68905 -19.48369 -17.75243 -16.67841 -16.19348 -15.93273 -15.81258 -15.51220 -14.96742 -14.36515 -13.93582 -13.88775 -13.79264 -13.34391 -12.87464 -12.50459 -12.36938 -12.06972 -11.85489 -11.69628 -11.54655 -11.38868 -11.05952 -10.86791 -10.74991 -10.53430 -10.24065 -9.99893 -9.62852 -9.14502 -8.97595 -8.72822 -7.38060 -6.83504 -6.42240 -4.33171 2.58405 2.85742 3.16572 3.18409 3.21956 3.43189 3.75165 4.05961 4.51751 4.72541 4.78442 4.93528 5.17844 5.36930 5.40359 5.51285 5.53812 5.70013 5.93018 5.97793 6.15366 6.18339 6.42698 6.84933 6.99481 7.05563 7.32144 7.49672 7.62356 7.79437 7.84420 8.10148 8.21672 8.39739 8.59796 8.92088 8.93234 9.01450 10.37871 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.007043 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.457257 B = 3974.515676 C = 5533.531449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.118 3.882 3 H 0.105 0.895 4 O -0.543 6.543 5 C -0.173 4.173 6 C 0.486 3.514 7 O -0.462 6.462 8 N -0.677 5.677 9 C 0.131 3.869 10 C -0.238 4.238 11 C -0.116 4.116 12 C -0.035 4.035 13 F -0.164 7.164 14 C 0.091 3.909 15 C -0.458 4.458 16 H 0.078 0.922 17 C 0.066 3.934 18 N -0.765 5.765 19 Si 0.914 3.086 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.132 4.132 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.364 0.636 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.394 0.606 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.283 0.717 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 -3.020 -2.988 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.059 3.941 3 H 0.123 0.877 4 O -0.346 6.346 5 C -0.213 4.213 6 C 0.270 3.730 7 O -0.332 6.332 8 N -0.322 5.322 9 C 0.039 3.961 10 C -0.259 4.259 11 C -0.135 4.135 12 C -0.055 4.055 13 F -0.143 7.143 14 C 0.087 3.913 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.153 4.153 18 N -0.389 5.389 19 Si 0.738 3.262 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.153 4.153 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.210 0.790 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.227 0.773 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.911 -1.825 -2.025 12.220 hybrid contribution 0.053 -0.601 -0.158 0.624 sum -11.858 -2.427 -2.184 12.300 Atomic orbital electron populations 1.22539 0.96618 1.02285 1.02765 1.21623 0.91521 0.97523 0.83468 0.87734 1.86801 1.76965 1.27941 1.42896 1.22479 0.94339 1.03078 1.01431 1.20545 0.89309 0.80551 0.82584 1.90991 1.68559 1.38490 1.35155 1.43425 1.07177 1.52966 1.28662 1.17694 0.81173 1.02881 0.94389 1.19889 0.93932 1.17590 0.94535 1.20237 0.93491 1.03787 0.96022 1.18035 0.76836 1.15971 0.94689 1.91265 1.31990 1.94251 1.96838 1.17572 0.92652 0.90535 0.90587 1.19355 1.00982 1.33645 0.94794 0.90370 1.25951 0.95451 0.94260 0.99658 1.69834 1.13266 1.27160 1.28622 0.86279 0.80468 0.79370 0.80041 1.19091 1.20330 1.19065 1.21715 0.92476 1.02878 0.98240 0.92473 0.91635 0.91689 0.78998 0.88692 0.89270 0.77326 0.88484 0.87965 0.90564 0.82348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.53 37.16 0.35 -1.27 16 2 C 0.12 1.50 3.13 -26.73 -0.08 1.41 16 3 H 0.10 1.56 7.95 -51.93 -0.41 1.15 16 4 O -0.54 -8.16 12.57 -49.64 -0.62 -8.79 16 5 C -0.17 -2.03 5.38 -27.88 -0.15 -2.18 16 6 C 0.49 8.81 7.55 -10.99 -0.08 8.73 16 7 O -0.46 -10.91 12.81 -8.86 -0.11 -11.03 16 8 N -0.68 -12.08 5.34 -9.89 -0.05 -12.13 16 9 C 0.13 2.99 6.29 -83.73 -0.53 2.46 16 10 C -0.24 -5.13 9.97 -39.12 -0.39 -5.52 16 11 C -0.12 -2.66 10.00 -39.62 -0.40 -3.06 16 12 C -0.03 -0.92 7.31 -38.62 -0.28 -1.20 16 13 F -0.16 -4.30 16.82 2.25 0.04 -4.26 16 14 C 0.09 2.54 5.55 -106.78 -0.59 1.95 16 15 C -0.46 -12.92 8.69 -37.79 -0.33 -13.25 16 16 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 17 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 18 N -0.77 -21.22 10.55 55.55 0.59 -20.63 16 19 Si 0.91 20.14 29.56 -169.99 -5.03 15.12 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.13 -3.52 7.30 -38.71 -0.28 -3.80 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.36 3.88 9.05 45.56 0.41 4.29 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.39 5.27 8.82 -40.82 -0.36 4.91 16 31 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 33 H 0.28 7.43 8.30 -40.82 -0.34 7.09 16 34 H 0.16 4.53 4.35 -52.48 -0.23 4.30 16 LS Contribution 298.21 15.07 4.49 4.49 Total: -1.00 -33.41 298.21 -6.65 -40.06 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -3.09 Total: 11.21 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.85 Total: -14.05 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.53 Total: -32.76 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.74 Total: -19.82 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.04 Total: -4.26 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.41 -6.65 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181353441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.064 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds