Wall clock time and date at job start Mon Mar 30 2020 00:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 O 1.42899 * 109.47279 * 120.00086 * 2 1 3 5 5 C 1.52999 * 109.47251 * 240.00384 * 2 1 3 6 6 C 1.50702 * 109.47343 * 175.00043 * 5 2 1 7 7 O 1.21291 * 119.99541 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00212 * 179.97438 * 6 5 2 9 9 C 1.40008 * 120.00169 * 175.67983 * 8 6 5 10 10 C 1.39370 * 119.91400 * 215.20751 * 9 8 6 11 11 C 1.38360 * 120.46915 * 179.97438 * 10 9 8 12 12 C 1.38012 * 120.28918 * 0.04196 * 11 10 9 13 13 F 1.35106 * 120.09270 * 179.97438 * 12 11 10 14 14 C 1.41002 * 119.81341 * 359.97438 * 12 11 10 15 15 C 1.41294 * 120.23025 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00566 * 324.96658 * 15 14 12 17 17 C 1.39925 * 119.99741 * 145.24166 * 15 14 12 18 18 N 1.30851 * 120.00025 * 4.43968 * 17 15 14 19 19 Si 1.86797 * 119.99893 * 184.44847 * 17 15 14 20 20 H 1.48503 * 109.47558 * 59.99515 * 19 17 15 21 21 H 1.48502 * 109.47391 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46808 * 299.99368 * 19 17 15 23 23 C 1.38146 * 119.90893 * 35.48948 * 9 8 6 24 24 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47388 * 299.99769 * 1 2 3 26 26 H 1.08999 * 109.47081 * 60.00183 * 1 2 3 27 27 H 0.96700 * 113.99881 * 60.00198 * 4 2 1 28 28 H 1.08997 * 109.47777 * 54.99790 * 5 2 1 29 29 H 1.09008 * 109.46958 * 294.99928 * 5 2 1 30 30 H 0.97003 * 120.00347 * 355.68848 * 8 6 5 31 31 H 1.07992 * 119.76120 * 359.97438 * 10 9 8 32 32 H 1.08001 * 119.86036 * 180.02562 * 11 10 9 33 33 H 0.97003 * 119.99529 * 179.97438 * 18 17 15 34 34 H 1.08003 * 120.14229 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5419 -0.6148 -1.3128 7 8 4.1450 -0.0203 -0.4444 8 7 4.2150 -1.1803 -2.3343 9 6 5.5998 -1.0052 -2.4424 10 6 6.1905 -0.8959 -3.7000 11 6 7.5578 -0.7220 -3.8202 12 6 8.3528 -0.6558 -2.6940 13 9 9.6876 -0.4865 -2.8160 14 6 7.7679 -0.7654 -1.4157 15 6 8.5735 -0.6994 -0.2568 16 1 9.5694 -1.1170 -0.2668 17 6 8.0788 -0.0980 0.9058 18 7 6.8413 0.3252 0.9477 19 14 9.1850 0.1009 2.3978 20 1 10.3602 0.9333 2.0354 21 1 8.4281 0.7629 3.4905 22 1 9.6463 -1.2351 2.8535 23 6 6.3779 -0.9471 -1.3024 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5952 1.2328 28 1 1.6054 -0.2617 -2.1370 29 1 1.7516 -1.7715 -1.2057 30 1 3.7399 -1.7086 -2.9948 31 1 5.5765 -0.9472 -4.5869 32 1 8.0052 -0.6380 -4.7996 33 1 6.4983 0.7418 1.7538 34 1 5.9202 -1.0369 -0.3283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181353441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:39 Heat of formation + Delta-G solvation = -140.697070 kcal Electronic energy + Delta-G solvation = -20249.971143 eV Core-core repulsion = 16867.872981 eV Total energy + Delta-G solvation = -3382.098162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.16065 -41.11531 -39.08253 -37.89424 -35.95400 -34.82762 -32.89332 -31.60862 -30.25109 -28.29430 -27.23948 -23.79255 -23.11003 -22.20320 -21.03522 -19.55410 -18.14059 -17.91746 -17.63346 -17.07964 -16.87371 -16.68367 -16.12633 -15.94613 -15.31467 -14.95819 -14.67518 -14.54597 -14.32380 -13.76360 -13.54468 -13.30412 -13.24619 -12.87921 -12.85953 -12.71149 -12.56448 -12.35019 -12.10944 -11.67952 -11.51649 -11.10266 -10.99251 -10.68417 -10.33962 -9.34409 -8.69818 -8.35372 -6.42236 0.71827 0.96238 1.33389 1.43979 1.47649 1.97168 2.20950 2.38160 2.78644 3.50635 3.61624 3.80984 3.94464 4.06904 4.28512 4.37128 4.49046 4.66766 4.67101 4.70807 4.94889 5.04790 5.11690 5.20746 5.25825 5.30945 5.34654 5.66467 5.85158 5.86576 6.14438 6.30764 6.60201 6.81738 6.90648 6.94500 7.00863 7.62096 8.39496 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.007043 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.457257 B = 3974.515676 C = 5533.531449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 H 0.068 0.932 4 O -0.579 6.579 5 C -0.154 4.154 6 C 0.476 3.524 7 O -0.523 6.523 8 N -0.664 5.664 9 C 0.135 3.865 10 C -0.216 4.216 11 C -0.113 4.113 12 C -0.066 4.066 13 F -0.171 7.171 14 C 0.055 3.945 15 C -0.501 4.501 16 H 0.067 0.933 17 C 0.024 3.976 18 N -0.797 5.797 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.257 1.257 23 C -0.157 4.157 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.381 0.619 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.420 0.580 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.281 0.719 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.812 -3.769 -4.894 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.053 3.947 3 H 0.087 0.913 4 O -0.385 6.385 5 C -0.194 4.194 6 C 0.263 3.737 7 O -0.396 6.396 8 N -0.312 5.312 9 C 0.041 3.959 10 C -0.237 4.237 11 C -0.132 4.132 12 C -0.087 4.087 13 F -0.151 7.151 14 C 0.052 3.948 15 C -0.531 4.531 16 H 0.085 0.915 17 C -0.192 4.192 18 N -0.421 5.421 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.179 4.179 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.229 0.771 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.258 0.742 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.091 0.909 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.327 -2.617 -3.984 15.100 hybrid contribution 0.678 -0.406 0.257 0.831 sum -13.650 -3.023 -3.727 14.469 Atomic orbital electron populations 1.22400 0.93045 1.03994 1.03379 1.21681 0.94091 0.95710 0.83222 0.91343 1.86756 1.77967 1.29486 1.44315 1.22474 0.88811 1.05684 1.02395 1.21791 0.91922 0.78824 0.81140 1.90993 1.70389 1.40954 1.37308 1.43392 1.05177 1.53094 1.29531 1.17854 0.83476 1.00764 0.93819 1.20430 0.93816 1.13908 0.95577 1.20671 0.93987 1.02150 0.96409 1.18393 0.77071 1.17733 0.95485 1.91229 1.32503 1.94483 1.96855 1.17948 0.93736 0.91594 0.91545 1.19511 1.01017 1.36123 0.96460 0.91454 1.26782 0.96813 0.93387 1.02196 1.69986 1.14759 1.28232 1.29117 0.85244 0.78386 0.79658 0.76336 1.18840 1.19325 1.18078 1.21592 0.92515 1.04943 0.98860 0.90147 0.92374 0.89772 0.77095 0.84975 0.85512 0.74225 0.83454 0.84477 0.90876 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.53 71.98 0.69 -1.78 16 2 C 0.11 2.68 3.13 30.59 0.10 2.78 16 3 H 0.07 2.10 7.95 -2.39 -0.02 2.08 16 4 O -0.58 -17.38 12.57 -135.20 -1.70 -19.08 16 5 C -0.15 -3.09 5.38 29.85 0.16 -2.93 16 6 C 0.48 16.65 7.55 87.66 0.66 17.31 16 7 O -0.52 -25.43 12.81 10.71 0.14 -25.30 16 8 N -0.66 -22.00 5.34 -303.61 -1.62 -23.62 16 9 C 0.13 5.99 6.29 38.09 0.24 6.23 16 10 C -0.22 -8.58 9.97 22.57 0.22 -8.36 16 11 C -0.11 -4.96 10.00 22.25 0.22 -4.73 16 12 C -0.07 -3.55 7.31 22.89 0.17 -3.39 16 13 F -0.17 -9.20 16.82 44.97 0.76 -8.44 16 14 C 0.06 3.23 5.55 -21.26 -0.12 3.12 16 15 C -0.50 -29.92 8.69 23.43 0.20 -29.72 16 16 H 0.07 3.97 7.84 -2.91 -0.02 3.94 16 17 C 0.02 1.34 5.42 85.25 0.46 1.81 16 18 N -0.80 -46.70 10.55 21.82 0.23 -46.47 16 19 Si 0.98 43.15 29.56 68.60 2.03 45.18 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 C -0.16 -8.67 7.30 22.84 0.17 -8.50 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.38 7.74 9.05 -74.06 -0.67 7.07 16 28 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.42 9.34 8.82 -92.71 -0.82 8.52 16 31 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.28 15.62 8.30 -92.71 -0.77 14.85 16 34 H 0.13 8.10 4.35 -2.91 -0.01 8.09 16 Total: -1.00 -79.86 298.21 2.67 -77.19 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.33 Total: 28.72 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 3.17 Total: -28.17 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.39 Total: -70.09 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.56 Total: -44.38 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 0.76 Total: -8.44 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -79.86 2.67 -77.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181353441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.511 kcal (2) G-P(sol) polarization free energy of solvation -79.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds