Wall clock time and date at job start Mon Mar 30 2020 00:27:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09007 * 109.46941 * 2 1
4 4 O 1.42889 * 109.47504 * 240.00149 * 2 1 3
5 5 C 1.52993 * 109.46937 * 119.99535 * 2 1 3
6 6 C 1.50702 * 109.47511 * 185.00428 * 5 2 1
7 7 O 1.21293 * 119.99414 * 359.97438 * 6 5 2
8 8 N 1.34777 * 120.00252 * 180.02562 * 6 5 2
9 9 C 1.40007 * 119.99775 * 174.87562 * 8 6 5
10 10 C 1.39370 * 119.90859 * 146.35763 * 9 8 6
11 11 C 1.38364 * 120.47203 * 179.97438 * 10 9 8
12 12 C 1.38009 * 120.28506 * 359.97438 * 11 10 9
13 13 F 1.35100 * 120.09445 * 179.97438 * 12 11 10
14 14 C 1.41007 * 119.81262 * 0.02600 * 12 11 10
15 15 C 1.41292 * 120.22782 * 180.02562 * 14 12 11
16 16 H 1.08005 * 120.00203 * 331.48693 * 15 14 12
17 17 C 1.39926 * 120.00040 * 151.49637 * 15 14 12
18 18 N 1.30849 * 120.00005 * 348.98735 * 17 15 14
19 19 Si 1.86807 * 119.99812 * 168.99415 * 17 15 14
20 20 H 1.48496 * 109.47103 * 60.00055 * 19 17 15
21 21 H 1.48495 * 109.46654 * 179.97438 * 19 17 15
22 22 H 1.48493 * 109.47085 * 299.99687 * 19 17 15
23 23 C 1.38135 * 119.91406 * 326.08682 * 9 8 6
24 24 H 1.09001 * 109.47363 * 300.00307 * 1 2 3
25 25 H 1.09007 * 109.46790 * 60.00241 * 1 2 3
26 26 H 1.08994 * 109.47216 * 179.97438 * 1 2 3
27 27 H 0.96707 * 114.00120 * 299.99711 * 4 2 1
28 28 H 1.09003 * 109.47942 * 305.00703 * 5 2 1
29 29 H 1.09007 * 109.46988 * 65.00425 * 5 2 1
30 30 H 0.96997 * 119.99570 * 354.87551 * 8 6 5
31 31 H 1.08005 * 119.76250 * 0.02562 * 10 9 8
32 32 H 1.07998 * 119.86057 * 180.02562 * 11 10 9
33 33 H 0.96997 * 119.99870 * 179.97438 * 18 17 15
34 34 H 1.07999 * 120.14638 * 359.97438 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6735 -1.1667
5 6 2.0399 -0.7211 1.2493
6 6 3.5418 -0.6148 1.3129
7 8 4.1450 -0.0210 0.4441
8 7 4.2148 -1.1803 2.3346
9 6 5.6149 -1.1748 2.3388
10 6 6.3058 -1.0770 3.5452
11 6 7.6893 -1.0711 3.5630
12 6 8.4009 -1.1627 2.3840
13 9 9.7517 -1.1560 2.4058
14 6 7.7141 -1.2621 1.1566
15 6 8.4338 -1.3568 -0.0556
16 1 9.4150 -0.9130 -0.1372
17 6 7.8752 -2.0255 -1.1505
18 7 6.7928 -2.7442 -0.9955
19 14 8.6750 -1.8923 -2.8335
20 1 10.0634 -2.4144 -2.7644
21 1 7.8958 -2.6877 -3.8160
22 1 8.7016 -0.4695 -3.2576
23 6 6.3077 -1.2720 1.1477
24 1 -0.3634 0.5139 0.8899
25 1 -0.3633 0.5138 -0.8901
26 1 -0.3633 -1.0276 -0.0005
27 1 1.7211 -1.5952 -1.2328
28 1 1.6053 -0.2617 2.1370
29 1 1.7516 -1.7715 1.2056
30 1 3.7291 -1.5911 3.0668
31 1 5.7573 -1.0062 4.4729
32 1 8.2146 -0.9953 4.5035
33 1 6.4054 -3.2074 -1.7546
34 1 5.7718 -1.3526 0.2135
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001181353442.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:27:43
Heat of formation + Delta-G solvation = -121.936244 kcal
Electronic energy + Delta-G solvation = -20191.957148 eV
Core-core repulsion = 16810.672517 eV
Total energy + Delta-G solvation = -3381.284632 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-47.15385 -39.72471 -37.63225 -36.54650 -34.24504 -33.16036 -31.88749 -29.73928
-28.88883 -27.03106 -25.35706 -22.40562 -21.53492 -20.74320 -19.55503 -17.85632
-16.76835 -16.25606 -15.98336 -15.91430 -15.52297 -15.01211 -14.52722 -13.94109
-13.92850 -13.88075 -13.46255 -12.92158 -12.54171 -12.45436 -12.07081 -11.88392
-11.76241 -11.62045 -11.57136 -11.09632 -10.91925 -10.79136 -10.44511 -10.26003
-10.03517 -9.71132 -9.38138 -9.16213 -8.80496 -7.49864 -6.86234 -6.68349
-4.39044 2.51587 2.80969 3.11608 3.14546 3.17523 3.36904 3.67409
3.97941 4.48268 4.60326 4.74351 4.88944 5.13395 5.33566 5.38117
5.47224 5.52598 5.65121 5.91670 5.94521 6.10911 6.13129 6.40574
6.78594 6.93710 6.99502 7.20807 7.45828 7.57527 7.71387 7.82348
8.03901 8.14209 8.29804 8.51593 8.80356 8.85209 8.90259 10.20473
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.016084 B = 0.007087 C = 0.005108
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1740.416929 B = 3949.949605 C = 5480.747108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.118 3.882
3 H 0.104 0.896
4 O -0.544 6.544
5 C -0.174 4.174
6 C 0.501 3.499
7 O -0.497 6.497
8 N -0.671 5.671
9 C 0.134 3.866
10 C -0.241 4.241
11 C -0.110 4.110
12 C -0.039 4.039
13 F -0.164 7.164
14 C 0.094 3.906
15 C -0.448 4.448
16 H 0.082 0.918
17 C 0.075 3.925
18 N -0.788 5.788
19 Si 0.917 3.083
20 H -0.265 1.265
21 H -0.277 1.277
22 H -0.262 1.262
23 C -0.132 4.132
24 H 0.065 0.935
25 H 0.065 0.935
26 H 0.057 0.943
27 H 0.367 0.633
28 H 0.097 0.903
29 H 0.093 0.907
30 H 0.396 0.604
31 H 0.098 0.902
32 H 0.103 0.897
33 H 0.282 0.718
34 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.423 0.420 3.408 12.889
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C 0.058 3.942
3 H 0.122 0.878
4 O -0.348 6.348
5 C -0.214 4.214
6 C 0.287 3.713
7 O -0.369 6.369
8 N -0.316 5.316
9 C 0.042 3.958
10 C -0.263 4.263
11 C -0.130 4.130
12 C -0.060 4.060
13 F -0.143 7.143
14 C 0.090 3.910
15 C -0.477 4.477
16 H 0.100 0.900
17 C -0.144 4.144
18 N -0.413 5.413
19 Si 0.741 3.259
20 H -0.189 1.189
21 H -0.202 1.202
22 H -0.187 1.187
23 C -0.154 4.154
24 H 0.084 0.916
25 H 0.084 0.916
26 H 0.076 0.924
27 H 0.213 0.787
28 H 0.115 0.885
29 H 0.112 0.888
30 H 0.230 0.770
31 H 0.116 0.884
32 H 0.122 0.878
33 H 0.093 0.907
34 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -11.868 1.277 2.483 12.192
hybrid contribution -0.081 -0.857 0.052 0.862
sum -11.950 0.421 2.535 12.223
Atomic orbital electron populations
1.22539 0.96473 1.02416 1.02786 1.21620 0.91668 0.97396 0.83517
0.87838 1.86775 1.77028 1.28183 1.42799 1.22487 0.93897 1.03484
1.01549 1.20453 0.89400 0.79385 0.82106 1.90808 1.69496 1.39650
1.36970 1.43440 1.05885 1.58146 1.24131 1.17615 0.80685 1.02662
0.94854 1.19846 0.93033 1.18265 0.95148 1.20231 0.93752 1.03380
0.95629 1.17913 0.75971 1.17744 0.94363 1.91262 1.30322 1.95349
1.97397 1.17521 0.91988 0.90381 0.91097 1.19465 1.03202 1.30128
0.94951 0.89953 1.25896 0.94388 0.92979 1.01117 1.69747 1.17510
1.21055 1.33013 0.86219 0.79744 0.79650 0.80287 1.18944 1.20200
1.18660 1.21350 0.93088 1.03851 0.97086 0.91645 0.91593 0.92364
0.78682 0.88517 0.88832 0.77010 0.88376 0.87843 0.90679 0.83241
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.59 9.53 37.16 0.35 -1.23 16
2 C 0.12 1.47 3.13 -26.73 -0.08 1.39 16
3 H 0.10 1.48 7.96 -51.92 -0.41 1.06 16
4 O -0.54 -8.32 12.57 -49.66 -0.62 -8.94 16
5 C -0.17 -2.04 5.38 -27.89 -0.15 -2.19 16
6 C 0.50 9.12 7.44 -10.98 -0.08 9.04 16
7 O -0.50 -11.73 13.13 -8.88 -0.12 -11.84 16
8 N -0.67 -12.13 5.34 -9.90 -0.05 -12.19 16
9 C 0.13 3.10 6.26 -83.74 -0.52 2.57 16
10 C -0.24 -5.22 9.96 -39.11 -0.39 -5.61 16
11 C -0.11 -2.54 10.00 -39.62 -0.40 -2.94 16
12 C -0.04 -1.04 7.31 -38.62 -0.28 -1.32 16
13 F -0.16 -4.28 16.75 2.25 0.04 -4.25 16
14 C 0.09 2.66 5.56 -106.78 -0.59 2.06 16
15 C -0.45 -12.68 8.76 -37.79 -0.33 -13.01 16
16 H 0.08 2.28 7.76 -52.48 -0.41 1.87 16
17 C 0.07 1.97 5.25 -17.34 -0.09 1.88 16
18 N -0.79 -21.16 10.82 55.55 0.60 -20.56 16
19 Si 0.92 19.95 29.57 -169.99 -5.03 14.93 16
20 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16
21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16
22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16
23 C -0.13 -3.58 7.26 -38.71 -0.28 -3.86 16
24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
25 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16
26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
27 H 0.37 4.12 9.05 45.56 0.41 4.54 16
28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16
29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
30 H 0.40 5.39 8.82 -40.82 -0.36 5.03 16
31 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16
32 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16
33 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16
34 H 0.15 4.32 4.56 -52.49 -0.24 4.08 16
LS Contribution 298.62 15.07 4.50 4.50
Total: -1.00 -33.57 298.62 -6.63 -40.20
By element:
Atomic # 1 Polarization: 14.47 SS G_CDS: -3.10 Total: 11.36 kcal
Atomic # 6 Polarization: -10.37 SS G_CDS: -2.85 Total: -13.22 kcal
Atomic # 7 Polarization: -33.29 SS G_CDS: 0.55 Total: -32.75 kcal
Atomic # 8 Polarization: -20.04 SS G_CDS: -0.74 Total: -20.78 kcal
Atomic # 9 Polarization: -4.28 SS G_CDS: 0.04 Total: -4.25 kcal
Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -33.57 -6.63 -40.20 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001181353442.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.734 kcal
(2) G-P(sol) polarization free energy of solvation -33.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.302 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds