Wall clock time and date at job start Mon Mar 30 2020 00:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46941 * 2 1 4 4 O 1.42889 * 109.47504 * 240.00149 * 2 1 3 5 5 C 1.52993 * 109.46937 * 119.99535 * 2 1 3 6 6 C 1.50702 * 109.47511 * 185.00428 * 5 2 1 7 7 O 1.21293 * 119.99414 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00252 * 180.02562 * 6 5 2 9 9 C 1.40007 * 119.99775 * 174.87562 * 8 6 5 10 10 C 1.39370 * 119.90859 * 146.35763 * 9 8 6 11 11 C 1.38364 * 120.47203 * 179.97438 * 10 9 8 12 12 C 1.38009 * 120.28506 * 359.97438 * 11 10 9 13 13 F 1.35100 * 120.09445 * 179.97438 * 12 11 10 14 14 C 1.41007 * 119.81262 * 0.02600 * 12 11 10 15 15 C 1.41292 * 120.22782 * 180.02562 * 14 12 11 16 16 H 1.08005 * 120.00203 * 331.48693 * 15 14 12 17 17 C 1.39926 * 120.00040 * 151.49637 * 15 14 12 18 18 N 1.30849 * 120.00005 * 348.98735 * 17 15 14 19 19 Si 1.86807 * 119.99812 * 168.99415 * 17 15 14 20 20 H 1.48496 * 109.47103 * 60.00055 * 19 17 15 21 21 H 1.48495 * 109.46654 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47085 * 299.99687 * 19 17 15 23 23 C 1.38135 * 119.91406 * 326.08682 * 9 8 6 24 24 H 1.09001 * 109.47363 * 300.00307 * 1 2 3 25 25 H 1.09007 * 109.46790 * 60.00241 * 1 2 3 26 26 H 1.08994 * 109.47216 * 179.97438 * 1 2 3 27 27 H 0.96707 * 114.00120 * 299.99711 * 4 2 1 28 28 H 1.09003 * 109.47942 * 305.00703 * 5 2 1 29 29 H 1.09007 * 109.46988 * 65.00425 * 5 2 1 30 30 H 0.96997 * 119.99570 * 354.87551 * 8 6 5 31 31 H 1.08005 * 119.76250 * 0.02562 * 10 9 8 32 32 H 1.07998 * 119.86057 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99870 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.14638 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1667 5 6 2.0399 -0.7211 1.2493 6 6 3.5418 -0.6148 1.3129 7 8 4.1450 -0.0210 0.4441 8 7 4.2148 -1.1803 2.3346 9 6 5.6149 -1.1748 2.3388 10 6 6.3058 -1.0770 3.5452 11 6 7.6893 -1.0711 3.5630 12 6 8.4009 -1.1627 2.3840 13 9 9.7517 -1.1560 2.4058 14 6 7.7141 -1.2621 1.1566 15 6 8.4338 -1.3568 -0.0556 16 1 9.4150 -0.9130 -0.1372 17 6 7.8752 -2.0255 -1.1505 18 7 6.7928 -2.7442 -0.9955 19 14 8.6750 -1.8923 -2.8335 20 1 10.0634 -2.4144 -2.7644 21 1 7.8958 -2.6877 -3.8160 22 1 8.7016 -0.4695 -3.2576 23 6 6.3077 -1.2720 1.1477 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7211 -1.5952 -1.2328 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 3.7291 -1.5911 3.0668 31 1 5.7573 -1.0062 4.4729 32 1 8.2146 -0.9953 4.5035 33 1 6.4054 -3.2074 -1.7546 34 1 5.7718 -1.3526 0.2135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181353442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:43 Heat of formation + Delta-G solvation = -121.936244 kcal Electronic energy + Delta-G solvation = -20191.957148 eV Core-core repulsion = 16810.672517 eV Total energy + Delta-G solvation = -3381.284632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.15385 -39.72471 -37.63225 -36.54650 -34.24504 -33.16036 -31.88749 -29.73928 -28.88883 -27.03106 -25.35706 -22.40562 -21.53492 -20.74320 -19.55503 -17.85632 -16.76835 -16.25606 -15.98336 -15.91430 -15.52297 -15.01211 -14.52722 -13.94109 -13.92850 -13.88075 -13.46255 -12.92158 -12.54171 -12.45436 -12.07081 -11.88392 -11.76241 -11.62045 -11.57136 -11.09632 -10.91925 -10.79136 -10.44511 -10.26003 -10.03517 -9.71132 -9.38138 -9.16213 -8.80496 -7.49864 -6.86234 -6.68349 -4.39044 2.51587 2.80969 3.11608 3.14546 3.17523 3.36904 3.67409 3.97941 4.48268 4.60326 4.74351 4.88944 5.13395 5.33566 5.38117 5.47224 5.52598 5.65121 5.91670 5.94521 6.10911 6.13129 6.40574 6.78594 6.93710 6.99502 7.20807 7.45828 7.57527 7.71387 7.82348 8.03901 8.14209 8.29804 8.51593 8.80356 8.85209 8.90259 10.20473 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.007087 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.416929 B = 3949.949605 C = 5480.747108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 H 0.104 0.896 4 O -0.544 6.544 5 C -0.174 4.174 6 C 0.501 3.499 7 O -0.497 6.497 8 N -0.671 5.671 9 C 0.134 3.866 10 C -0.241 4.241 11 C -0.110 4.110 12 C -0.039 4.039 13 F -0.164 7.164 14 C 0.094 3.906 15 C -0.448 4.448 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.788 5.788 19 Si 0.917 3.083 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.132 4.132 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.367 0.633 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.396 0.604 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.282 0.718 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 0.420 3.408 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.058 3.942 3 H 0.122 0.878 4 O -0.348 6.348 5 C -0.214 4.214 6 C 0.287 3.713 7 O -0.369 6.369 8 N -0.316 5.316 9 C 0.042 3.958 10 C -0.263 4.263 11 C -0.130 4.130 12 C -0.060 4.060 13 F -0.143 7.143 14 C 0.090 3.910 15 C -0.477 4.477 16 H 0.100 0.900 17 C -0.144 4.144 18 N -0.413 5.413 19 Si 0.741 3.259 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.154 4.154 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.213 0.787 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.230 0.770 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.868 1.277 2.483 12.192 hybrid contribution -0.081 -0.857 0.052 0.862 sum -11.950 0.421 2.535 12.223 Atomic orbital electron populations 1.22539 0.96473 1.02416 1.02786 1.21620 0.91668 0.97396 0.83517 0.87838 1.86775 1.77028 1.28183 1.42799 1.22487 0.93897 1.03484 1.01549 1.20453 0.89400 0.79385 0.82106 1.90808 1.69496 1.39650 1.36970 1.43440 1.05885 1.58146 1.24131 1.17615 0.80685 1.02662 0.94854 1.19846 0.93033 1.18265 0.95148 1.20231 0.93752 1.03380 0.95629 1.17913 0.75971 1.17744 0.94363 1.91262 1.30322 1.95349 1.97397 1.17521 0.91988 0.90381 0.91097 1.19465 1.03202 1.30128 0.94951 0.89953 1.25896 0.94388 0.92979 1.01117 1.69747 1.17510 1.21055 1.33013 0.86219 0.79744 0.79650 0.80287 1.18944 1.20200 1.18660 1.21350 0.93088 1.03851 0.97086 0.91645 0.91593 0.92364 0.78682 0.88517 0.88832 0.77010 0.88376 0.87843 0.90679 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.53 37.16 0.35 -1.23 16 2 C 0.12 1.47 3.13 -26.73 -0.08 1.39 16 3 H 0.10 1.48 7.96 -51.92 -0.41 1.06 16 4 O -0.54 -8.32 12.57 -49.66 -0.62 -8.94 16 5 C -0.17 -2.04 5.38 -27.89 -0.15 -2.19 16 6 C 0.50 9.12 7.44 -10.98 -0.08 9.04 16 7 O -0.50 -11.73 13.13 -8.88 -0.12 -11.84 16 8 N -0.67 -12.13 5.34 -9.90 -0.05 -12.19 16 9 C 0.13 3.10 6.26 -83.74 -0.52 2.57 16 10 C -0.24 -5.22 9.96 -39.11 -0.39 -5.61 16 11 C -0.11 -2.54 10.00 -39.62 -0.40 -2.94 16 12 C -0.04 -1.04 7.31 -38.62 -0.28 -1.32 16 13 F -0.16 -4.28 16.75 2.25 0.04 -4.25 16 14 C 0.09 2.66 5.56 -106.78 -0.59 2.06 16 15 C -0.45 -12.68 8.76 -37.79 -0.33 -13.01 16 16 H 0.08 2.28 7.76 -52.48 -0.41 1.87 16 17 C 0.07 1.97 5.25 -17.34 -0.09 1.88 16 18 N -0.79 -21.16 10.82 55.55 0.60 -20.56 16 19 Si 0.92 19.95 29.57 -169.99 -5.03 14.93 16 20 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.13 -3.58 7.26 -38.71 -0.28 -3.86 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.37 4.12 9.05 45.56 0.41 4.54 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.40 5.39 8.82 -40.82 -0.36 5.03 16 31 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 32 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 34 H 0.15 4.32 4.56 -52.49 -0.24 4.08 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -33.57 298.62 -6.63 -40.20 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -3.10 Total: 11.36 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.85 Total: -13.22 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.55 Total: -32.75 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.74 Total: -20.78 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.04 Total: -4.25 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.57 -6.63 -40.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181353442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.734 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds