Wall clock time and date at job start Mon Mar 30 2020 00:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46941 * 2 1 4 4 O 1.42889 * 109.47504 * 240.00149 * 2 1 3 5 5 C 1.52993 * 109.46937 * 119.99535 * 2 1 3 6 6 C 1.50702 * 109.47511 * 185.00428 * 5 2 1 7 7 O 1.21293 * 119.99414 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00252 * 180.02562 * 6 5 2 9 9 C 1.40007 * 119.99775 * 174.87562 * 8 6 5 10 10 C 1.39370 * 119.90859 * 146.35763 * 9 8 6 11 11 C 1.38364 * 120.47203 * 179.97438 * 10 9 8 12 12 C 1.38009 * 120.28506 * 359.97438 * 11 10 9 13 13 F 1.35100 * 120.09445 * 179.97438 * 12 11 10 14 14 C 1.41007 * 119.81262 * 0.02600 * 12 11 10 15 15 C 1.41292 * 120.22782 * 180.02562 * 14 12 11 16 16 H 1.08005 * 120.00203 * 331.48693 * 15 14 12 17 17 C 1.39926 * 120.00040 * 151.49637 * 15 14 12 18 18 N 1.30849 * 120.00005 * 348.98735 * 17 15 14 19 19 Si 1.86807 * 119.99812 * 168.99415 * 17 15 14 20 20 H 1.48496 * 109.47103 * 60.00055 * 19 17 15 21 21 H 1.48495 * 109.46654 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47085 * 299.99687 * 19 17 15 23 23 C 1.38135 * 119.91406 * 326.08682 * 9 8 6 24 24 H 1.09001 * 109.47363 * 300.00307 * 1 2 3 25 25 H 1.09007 * 109.46790 * 60.00241 * 1 2 3 26 26 H 1.08994 * 109.47216 * 179.97438 * 1 2 3 27 27 H 0.96707 * 114.00120 * 299.99711 * 4 2 1 28 28 H 1.09003 * 109.47942 * 305.00703 * 5 2 1 29 29 H 1.09007 * 109.46988 * 65.00425 * 5 2 1 30 30 H 0.96997 * 119.99570 * 354.87551 * 8 6 5 31 31 H 1.08005 * 119.76250 * 0.02562 * 10 9 8 32 32 H 1.07998 * 119.86057 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99870 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.14638 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1667 5 6 2.0399 -0.7211 1.2493 6 6 3.5418 -0.6148 1.3129 7 8 4.1450 -0.0210 0.4441 8 7 4.2148 -1.1803 2.3346 9 6 5.6149 -1.1748 2.3388 10 6 6.3058 -1.0770 3.5452 11 6 7.6893 -1.0711 3.5630 12 6 8.4009 -1.1627 2.3840 13 9 9.7517 -1.1560 2.4058 14 6 7.7141 -1.2621 1.1566 15 6 8.4338 -1.3568 -0.0556 16 1 9.4150 -0.9130 -0.1372 17 6 7.8752 -2.0255 -1.1505 18 7 6.7928 -2.7442 -0.9955 19 14 8.6750 -1.8923 -2.8335 20 1 10.0634 -2.4144 -2.7644 21 1 7.8958 -2.6877 -3.8160 22 1 8.7016 -0.4695 -3.2576 23 6 6.3077 -1.2720 1.1477 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7211 -1.5952 -1.2328 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 3.7291 -1.5911 3.0668 31 1 5.7573 -1.0062 4.4729 32 1 8.2146 -0.9953 4.5035 33 1 6.4054 -3.2074 -1.7546 34 1 5.7718 -1.3526 0.2135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181353442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:43 Heat of formation + Delta-G solvation = -146.696284 kcal Electronic energy + Delta-G solvation = -20193.030824 eV Core-core repulsion = 16810.672517 eV Total energy + Delta-G solvation = -3382.358307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.17848 -41.22852 -39.13739 -37.96273 -36.06347 -34.94436 -32.93852 -31.68357 -30.29024 -28.35901 -27.31567 -23.88151 -23.16645 -22.24024 -21.12925 -19.66283 -18.22991 -17.95600 -17.73457 -17.18782 -16.89587 -16.69777 -16.27232 -15.94200 -15.43374 -15.07130 -14.73648 -14.60831 -14.33016 -13.78302 -13.62105 -13.49606 -13.28695 -12.93302 -12.85950 -12.75784 -12.54787 -12.28823 -12.13846 -11.71066 -11.59093 -11.26561 -11.05828 -10.82128 -10.50972 -9.45868 -8.75215 -8.57676 -6.46265 0.66550 0.91562 1.31075 1.43514 1.44313 1.85565 2.16314 2.31464 2.67550 3.51978 3.57608 3.74595 3.90108 4.04882 4.25471 4.32619 4.44938 4.63576 4.64583 4.67352 4.92949 4.99685 5.06841 5.13796 5.21086 5.25754 5.33465 5.63350 5.77232 5.80444 6.07172 6.21976 6.53130 6.71762 6.80142 6.88400 6.95645 7.47274 8.26956 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.007087 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.416929 B = 3949.949605 C = 5480.747108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H 0.074 0.926 4 O -0.581 6.581 5 C -0.156 4.156 6 C 0.492 3.508 7 O -0.558 6.558 8 N -0.660 5.660 9 C 0.137 3.863 10 C -0.221 4.221 11 C -0.107 4.107 12 C -0.072 4.072 13 F -0.171 7.171 14 C 0.059 3.941 15 C -0.496 4.496 16 H 0.069 0.931 17 C 0.033 3.967 18 N -0.816 5.816 19 Si 0.983 3.017 20 H -0.256 1.256 21 H -0.260 1.260 22 H -0.266 1.266 23 C -0.161 4.161 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.381 0.619 28 H 0.140 0.860 29 H 0.125 0.875 30 H 0.422 0.578 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.288 0.712 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 -0.059 5.250 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.051 3.949 3 H 0.092 0.908 4 O -0.388 6.388 5 C -0.196 4.196 6 C 0.281 3.719 7 O -0.435 6.435 8 N -0.307 5.307 9 C 0.043 3.957 10 C -0.242 4.242 11 C -0.126 4.126 12 C -0.092 4.092 13 F -0.150 7.150 14 C 0.055 3.945 15 C -0.525 4.525 16 H 0.088 0.912 17 C -0.182 4.182 18 N -0.441 5.441 19 Si 0.803 3.197 20 H -0.180 1.180 21 H -0.184 1.184 22 H -0.190 1.190 23 C -0.183 4.183 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.230 0.770 28 H 0.158 0.842 29 H 0.143 0.857 30 H 0.260 0.740 31 H 0.167 0.833 32 H 0.157 0.843 33 H 0.098 0.902 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.372 0.769 4.382 15.045 hybrid contribution 0.587 -0.666 -0.346 0.952 sum -13.786 0.103 4.036 14.365 Atomic orbital electron populations 1.22404 0.92856 1.03981 1.03583 1.21736 0.94298 0.95820 0.83048 0.90792 1.86730 1.78071 1.29564 1.44430 1.22521 0.88376 1.05805 1.02894 1.21716 0.92035 0.77574 0.80574 1.90798 1.71354 1.42235 1.39091 1.43408 1.03937 1.58029 1.25299 1.17793 0.83279 1.00450 0.94148 1.20398 0.92737 1.14673 0.96408 1.20676 0.94568 1.01603 0.95743 1.18282 0.76056 1.19602 0.95308 1.91226 1.30765 1.95576 1.97458 1.17905 0.93072 0.91441 0.92045 1.19631 1.03472 1.32598 0.96811 0.91237 1.26718 0.94953 0.92105 1.04431 1.69802 1.18561 1.21621 1.34150 0.85238 0.79288 0.79483 0.75651 1.17960 1.18399 1.19024 1.21224 0.92883 1.06283 0.97907 0.89459 0.92228 0.90357 0.77040 0.84218 0.85674 0.73958 0.83298 0.84269 0.90159 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.53 71.98 0.69 -1.70 16 2 C 0.11 2.59 3.13 30.59 0.10 2.68 16 3 H 0.07 2.13 7.96 -2.38 -0.02 2.11 16 4 O -0.58 -17.77 12.57 -135.18 -1.70 -19.47 16 5 C -0.16 -3.15 5.38 29.85 0.16 -2.99 16 6 C 0.49 17.31 7.44 87.66 0.65 17.96 16 7 O -0.56 -27.12 13.13 10.73 0.14 -26.98 16 8 N -0.66 -22.25 5.34 -303.61 -1.62 -23.87 16 9 C 0.14 6.18 6.26 38.08 0.24 6.42 16 10 C -0.22 -8.86 9.96 22.57 0.22 -8.64 16 11 C -0.11 -4.71 10.00 22.25 0.22 -4.48 16 12 C -0.07 -3.88 7.31 22.89 0.17 -3.71 16 13 F -0.17 -9.19 16.75 44.97 0.75 -8.44 16 14 C 0.06 3.48 5.56 -21.26 -0.12 3.36 16 15 C -0.50 -29.75 8.76 23.43 0.21 -29.54 16 16 H 0.07 4.14 7.76 -2.91 -0.02 4.11 16 17 C 0.03 1.83 5.25 85.25 0.45 2.28 16 18 N -0.82 -45.73 10.82 21.82 0.24 -45.49 16 19 Si 0.98 42.50 29.57 68.60 2.03 44.53 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C -0.16 -9.00 7.26 22.83 0.17 -8.83 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.38 8.32 9.05 -74.05 -0.67 7.65 16 28 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.42 9.64 8.82 -92.71 -0.82 8.82 16 31 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 34 H 0.12 7.57 4.56 -2.91 -0.01 7.56 16 Total: -1.00 -80.17 298.62 2.65 -77.52 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.33 Total: 29.39 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.15 Total: -27.18 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.39 Total: -69.36 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -1.56 Total: -46.45 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 0.75 Total: -8.44 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -80.17 2.65 -77.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181353442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.175 kcal (2) G-P(sol) polarization free energy of solvation -80.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds