Wall clock time and date at job start Mon Mar 30 2020 00:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99835 * 2 1 4 4 H 1.08999 * 109.46975 * 29.99488 * 3 2 1 5 5 C 1.52999 * 109.46666 * 269.99865 * 3 2 1 6 6 C 1.50701 * 109.46952 * 149.99947 * 3 2 1 7 7 O 1.21287 * 119.99978 * 4.99936 * 6 3 2 8 8 N 1.34776 * 119.99566 * 184.99596 * 6 3 2 9 9 C 1.40011 * 119.99982 * 174.89203 * 8 6 3 10 10 C 1.39368 * 119.90817 * 325.53918 * 9 8 6 11 11 C 1.38370 * 120.46588 * 179.71288 * 10 9 8 12 12 C 1.38007 * 120.28661 * 0.55989 * 11 10 9 13 13 F 1.35098 * 120.09151 * 179.70099 * 12 11 10 14 14 C 1.41000 * 119.81361 * 359.71549 * 12 11 10 15 15 C 1.41295 * 120.22891 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00468 * 25.32205 * 15 14 12 17 17 C 1.39931 * 119.99814 * 205.32422 * 15 14 12 18 18 N 1.30848 * 120.00173 * 16.68421 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 196.68779 * 17 15 14 20 20 H 1.48496 * 109.47381 * 59.99779 * 19 17 15 21 21 H 1.48500 * 109.47091 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47285 * 299.99803 * 19 17 15 23 23 C 1.38139 * 119.90944 * 145.80400 * 9 8 6 24 24 H 1.08999 * 109.47446 * 300.00186 * 1 2 3 25 25 H 1.08998 * 109.47019 * 60.00533 * 1 2 3 26 26 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47431 * 60.00160 * 5 3 2 28 28 H 1.09005 * 109.47506 * 299.99602 * 5 3 2 29 29 H 1.09004 * 109.46770 * 180.02562 * 5 3 2 30 30 H 0.97004 * 120.00025 * 354.90005 * 8 6 3 31 31 H 1.07999 * 119.76487 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.85663 * 180.25687 * 11 10 9 33 33 H 0.96998 * 120.00136 * 180.02562 * 18 17 15 34 34 H 1.08002 * 120.14690 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2176 1.7713 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7896 0.2045 1.0914 8 7 4.0253 2.4041 0.9223 9 6 5.2058 2.3807 1.6749 10 6 5.3295 1.4981 2.7463 11 6 6.4931 1.4612 3.4941 12 6 7.5409 2.3075 3.1934 13 9 8.6729 2.2723 3.9299 14 6 7.4264 3.2093 2.1154 15 6 8.4935 4.0801 1.8001 16 1 9.5049 3.8151 2.0709 17 6 8.2399 5.2859 1.1370 18 7 7.0237 5.7669 1.0961 19 14 9.6376 6.2089 0.3100 20 1 10.2507 5.3479 -0.7330 21 1 9.1101 7.4469 -0.3179 22 1 10.6632 6.5654 1.3232 23 6 6.2425 3.2364 1.3567 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.2568 1.8013 -1.9564 28 1 2.8829 1.0774 -1.9564 29 1 2.6613 2.7669 -1.4425 30 1 3.7017 3.2409 0.5535 31 1 4.5129 0.8354 2.9921 32 1 6.5799 0.7704 4.3198 33 1 6.8478 6.6026 0.6361 34 1 6.1446 3.9228 0.5286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181459032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:24 Heat of formation + Delta-G solvation = -110.170676 kcal Electronic energy + Delta-G solvation = -19931.214089 eV Core-core repulsion = 16550.439650 eV Total energy + Delta-G solvation = -3380.774438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.20761 -39.97433 -37.98921 -36.79526 -34.31842 -33.44548 -31.59726 -29.80196 -27.99783 -26.91541 -25.38421 -24.11420 -21.68557 -21.07182 -19.72228 -17.67353 -17.41156 -16.77666 -16.04019 -15.75570 -15.34813 -15.11727 -14.71330 -14.55282 -13.98606 -13.94180 -13.35674 -13.06317 -12.73856 -12.64082 -12.43952 -12.07098 -11.93739 -11.67092 -11.53612 -11.25393 -11.19605 -11.03237 -10.71812 -10.31700 -10.00705 -9.68113 -9.42858 -9.25095 -8.93121 -7.62612 -7.05804 -6.76954 -4.48530 2.38985 2.70656 3.00972 3.02201 3.05771 3.10681 3.24612 3.85777 4.05758 4.48056 4.72742 4.89885 4.96732 5.14059 5.22613 5.40717 5.43671 5.52815 5.58425 5.94906 5.99147 6.10253 6.52477 6.65682 6.79746 6.83508 6.97237 7.08472 7.45389 7.52866 7.62946 7.87137 7.94537 8.15398 8.41690 8.63426 8.66814 8.78427 10.04834 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.005239 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.528757 B = 5343.383186 C = 6379.165751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.071 3.929 4 H 0.086 0.914 5 C -0.171 4.171 6 C 0.506 3.494 7 O -0.504 6.504 8 N -0.662 5.662 9 C 0.143 3.857 10 C -0.207 4.207 11 C -0.111 4.111 12 C -0.032 4.032 13 F -0.163 7.163 14 C 0.099 3.901 15 C -0.453 4.453 16 H 0.084 0.916 17 C 0.078 3.922 18 N -0.794 5.794 19 Si 0.913 3.087 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.165 4.165 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.403 0.597 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.282 0.718 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -1.085 -5.064 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.104 0.896 5 C -0.229 4.229 6 C 0.291 3.709 7 O -0.377 6.377 8 N -0.308 5.308 9 C 0.051 3.949 10 C -0.228 4.228 11 C -0.131 4.131 12 C -0.053 4.053 13 F -0.142 7.142 14 C 0.095 3.905 15 C -0.482 4.482 16 H 0.102 0.898 17 C -0.140 4.140 18 N -0.420 5.420 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.186 4.186 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.238 0.762 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.828 -1.838 -4.849 12.006 hybrid contribution 0.279 1.178 -0.433 1.286 sum -10.549 -0.660 -5.282 11.816 Atomic orbital electron populations 1.22862 0.80951 1.03060 0.99912 1.88061 1.19365 1.25348 1.94926 1.21947 0.93732 0.86616 0.96799 0.89634 1.22240 1.03195 1.02356 0.95088 1.20336 0.86060 0.84360 0.80142 1.90728 1.68375 1.29484 1.49138 1.43383 1.24476 1.09921 1.53027 1.17560 0.85760 0.99337 0.92242 1.20123 0.98931 1.04914 0.98815 1.20377 0.93371 0.99072 1.00255 1.17903 0.84485 1.06404 0.96502 1.91269 1.50237 1.96406 1.76286 1.17338 0.93411 0.90913 0.88855 1.19465 0.95073 1.01562 1.32135 0.89807 1.25888 0.96836 0.97283 0.94015 1.69792 1.21496 1.18235 1.32433 0.86271 0.81352 0.78474 0.80158 1.18675 1.20237 1.18805 1.20884 0.92548 1.02806 1.02398 0.93889 0.93965 0.89293 0.91403 0.90937 0.90697 0.76207 0.87176 0.87687 0.90668 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.36 -5.16 9.89 -55.09 -0.54 -5.71 16 3 C 0.07 0.92 3.13 -27.88 -0.09 0.84 16 4 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 5 C -0.17 -1.81 9.47 37.16 0.35 -1.46 16 6 C 0.51 9.11 6.91 -10.98 -0.08 9.03 16 7 O -0.50 -11.35 14.25 -14.31 -0.20 -11.56 16 8 N -0.66 -11.97 5.30 -9.90 -0.05 -12.02 16 9 C 0.14 3.25 6.25 -83.74 -0.52 2.73 16 10 C -0.21 -4.86 8.66 -39.11 -0.34 -5.20 16 11 C -0.11 -2.65 10.00 -39.62 -0.40 -3.05 16 12 C -0.03 -0.84 7.31 -38.62 -0.28 -1.12 16 13 F -0.16 -4.19 16.72 2.25 0.04 -4.15 16 14 C 0.10 2.63 5.57 -106.78 -0.60 2.03 16 15 C -0.45 -11.99 8.78 -37.79 -0.33 -12.32 16 16 H 0.08 2.20 7.74 -52.49 -0.41 1.80 16 17 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 18 N -0.79 -19.19 10.94 55.55 0.61 -18.59 16 19 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.16 -4.06 8.59 -38.71 -0.33 -4.39 16 24 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 25 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.70 7.77 -51.93 -0.40 0.29 16 30 H 0.40 5.90 8.43 -40.82 -0.34 5.56 16 31 H 0.11 2.55 6.48 -52.49 -0.34 2.21 16 32 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 34 H 0.13 3.18 6.18 -52.49 -0.32 2.85 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -30.96 299.47 -6.14 -37.10 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.86 Total: 7.03 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.61 Total: -9.76 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.56 Total: -30.61 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.75 Total: -17.27 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.96 -6.14 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181459032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.068 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds