Wall clock time and date at job start Mon Mar 30 2020 00:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99835 * 2 1 4 4 H 1.08999 * 109.46975 * 29.99488 * 3 2 1 5 5 C 1.52999 * 109.46666 * 269.99865 * 3 2 1 6 6 C 1.50701 * 109.46952 * 149.99947 * 3 2 1 7 7 O 1.21287 * 119.99978 * 4.99936 * 6 3 2 8 8 N 1.34776 * 119.99566 * 184.99596 * 6 3 2 9 9 C 1.40011 * 119.99982 * 174.89203 * 8 6 3 10 10 C 1.39368 * 119.90817 * 325.53918 * 9 8 6 11 11 C 1.38370 * 120.46588 * 179.71288 * 10 9 8 12 12 C 1.38007 * 120.28661 * 0.55989 * 11 10 9 13 13 F 1.35098 * 120.09151 * 179.70099 * 12 11 10 14 14 C 1.41000 * 119.81361 * 359.71549 * 12 11 10 15 15 C 1.41295 * 120.22891 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00468 * 25.32205 * 15 14 12 17 17 C 1.39931 * 119.99814 * 205.32422 * 15 14 12 18 18 N 1.30848 * 120.00173 * 16.68421 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 196.68779 * 17 15 14 20 20 H 1.48496 * 109.47381 * 59.99779 * 19 17 15 21 21 H 1.48500 * 109.47091 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47285 * 299.99803 * 19 17 15 23 23 C 1.38139 * 119.90944 * 145.80400 * 9 8 6 24 24 H 1.08999 * 109.47446 * 300.00186 * 1 2 3 25 25 H 1.08998 * 109.47019 * 60.00533 * 1 2 3 26 26 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47431 * 60.00160 * 5 3 2 28 28 H 1.09005 * 109.47506 * 299.99602 * 5 3 2 29 29 H 1.09004 * 109.46770 * 180.02562 * 5 3 2 30 30 H 0.97004 * 120.00025 * 354.90005 * 8 6 3 31 31 H 1.07999 * 119.76487 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.85663 * 180.25687 * 11 10 9 33 33 H 0.96998 * 120.00136 * 180.02562 * 18 17 15 34 34 H 1.08002 * 120.14690 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2176 1.7713 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7896 0.2045 1.0914 8 7 4.0253 2.4041 0.9223 9 6 5.2058 2.3807 1.6749 10 6 5.3295 1.4981 2.7463 11 6 6.4931 1.4612 3.4941 12 6 7.5409 2.3075 3.1934 13 9 8.6729 2.2723 3.9299 14 6 7.4264 3.2093 2.1154 15 6 8.4935 4.0801 1.8001 16 1 9.5049 3.8151 2.0709 17 6 8.2399 5.2859 1.1370 18 7 7.0237 5.7669 1.0961 19 14 9.6376 6.2089 0.3100 20 1 10.2507 5.3479 -0.7330 21 1 9.1101 7.4469 -0.3179 22 1 10.6632 6.5654 1.3232 23 6 6.2425 3.2364 1.3567 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.2568 1.8013 -1.9564 28 1 2.8829 1.0774 -1.9564 29 1 2.6613 2.7669 -1.4425 30 1 3.7017 3.2409 0.5535 31 1 4.5129 0.8354 2.9921 32 1 6.5799 0.7704 4.3198 33 1 6.8478 6.6026 0.6361 34 1 6.1446 3.9228 0.5286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181459032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:24 Heat of formation + Delta-G solvation = -129.668465 kcal Electronic energy + Delta-G solvation = -19932.059576 eV Core-core repulsion = 16550.439650 eV Total energy + Delta-G solvation = -3381.619926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.20185 -41.43248 -39.36082 -38.29941 -36.05375 -35.18559 -32.68247 -31.70602 -29.70205 -27.67566 -27.28980 -25.28506 -23.53459 -22.67725 -21.29907 -19.42105 -18.81714 -18.09999 -17.86600 -17.23956 -16.87212 -16.55342 -16.16558 -15.98989 -15.82579 -15.41953 -14.84189 -14.44856 -14.32242 -13.96746 -13.71860 -13.53261 -13.37923 -13.22074 -13.01248 -12.80087 -12.72250 -12.44324 -12.10526 -12.06567 -11.55051 -11.19999 -11.03791 -10.83720 -10.45629 -9.55890 -8.89475 -8.60143 -6.45613 0.59269 0.84770 1.39858 1.46083 1.51312 1.65471 1.88357 2.20363 2.63515 3.02697 3.45681 3.61921 3.90689 4.01722 4.02986 4.26500 4.48598 4.57508 4.63422 4.67480 4.80026 4.87672 4.91934 4.97047 5.00634 5.19594 5.22035 5.58530 5.71444 5.72883 5.94387 6.03931 6.15651 6.45765 6.62946 6.73948 6.80627 7.21973 8.24199 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.005239 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.528757 B = 5343.383186 C = 6379.165751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.079 3.921 4 H 0.122 0.878 5 C -0.167 4.167 6 C 0.502 3.498 7 O -0.555 6.555 8 N -0.653 5.653 9 C 0.153 3.847 10 C -0.216 4.216 11 C -0.108 4.108 12 C -0.069 4.069 13 F -0.169 7.169 14 C 0.074 3.926 15 C -0.491 4.491 16 H 0.071 0.929 17 C 0.045 3.955 18 N -0.808 5.808 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.265 1.265 23 C -0.177 4.177 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.421 0.579 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.296 0.704 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 0.229 -6.576 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.018 3.982 4 H 0.139 0.861 5 C -0.224 4.224 6 C 0.290 3.710 7 O -0.431 6.431 8 N -0.300 5.300 9 C 0.059 3.941 10 C -0.237 4.237 11 C -0.127 4.127 12 C -0.090 4.090 13 F -0.148 7.148 14 C 0.070 3.930 15 C -0.519 4.519 16 H 0.090 0.910 17 C -0.173 4.173 18 N -0.433 5.433 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.181 1.181 22 H -0.190 1.190 23 C -0.199 4.199 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.259 0.741 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.107 0.893 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.569 -0.504 -6.373 14.102 hybrid contribution 0.688 0.734 0.048 1.007 sum -11.881 0.230 -6.326 13.462 Atomic orbital electron populations 1.23119 0.78410 1.04262 1.01627 1.88016 1.22163 1.26172 1.95178 1.21992 0.91036 0.87256 0.97876 0.86078 1.22256 1.04627 1.02323 0.93206 1.21416 0.87390 0.83131 0.79078 1.90700 1.69915 1.31252 1.51266 1.43337 1.23023 1.11293 1.52320 1.17606 0.86841 0.97756 0.91898 1.20282 0.98948 1.05260 0.99243 1.20624 0.92831 0.98653 1.00608 1.18156 0.85203 1.08109 0.97500 1.91231 1.50597 1.96572 1.76437 1.17730 0.94465 0.91410 0.89417 1.19648 0.94610 1.03204 1.34477 0.91046 1.26653 0.99599 0.97267 0.93734 1.69781 1.22869 1.18837 1.31789 0.85219 0.77910 0.77617 0.78828 1.18604 1.18055 1.18969 1.20859 0.92731 1.03708 1.02562 0.92799 0.91502 0.88556 0.88307 0.92943 0.89296 0.74060 0.86813 0.85600 0.89300 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.40 -10.62 9.89 -129.99 -1.28 -11.90 16 3 C 0.08 1.87 3.13 29.85 0.09 1.96 16 4 H 0.12 1.99 7.79 -2.39 -0.02 1.98 16 5 C -0.17 -3.00 9.47 71.98 0.68 -2.32 16 6 C 0.50 17.54 6.91 87.66 0.61 18.14 16 7 O -0.55 -25.10 14.25 15.94 0.23 -24.87 16 8 N -0.65 -22.86 5.30 -303.61 -1.61 -24.47 16 9 C 0.15 6.95 6.25 38.08 0.24 7.19 16 10 C -0.22 -10.27 8.66 22.57 0.20 -10.07 16 11 C -0.11 -5.24 10.00 22.25 0.22 -5.02 16 12 C -0.07 -3.72 7.31 22.89 0.17 -3.55 16 13 F -0.17 -9.03 16.72 44.97 0.75 -8.27 16 14 C 0.07 4.03 5.57 -21.26 -0.12 3.92 16 15 C -0.49 -26.64 8.78 23.43 0.21 -26.44 16 16 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 17 C 0.04 2.14 5.16 85.25 0.44 2.58 16 18 N -0.81 -38.46 10.94 21.83 0.24 -38.22 16 19 Si 0.98 36.57 29.59 68.60 2.03 38.60 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 21 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 22 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 23 C -0.18 -8.83 8.59 22.83 0.20 -8.64 16 24 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 25 H 0.07 0.72 7.87 -2.39 -0.02 0.70 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.20 7.87 -2.39 -0.02 1.18 16 28 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.09 1.34 7.77 -2.38 -0.02 1.33 16 30 H 0.42 11.50 8.43 -92.71 -0.78 10.71 16 31 H 0.11 5.30 6.48 -2.91 -0.02 5.28 16 32 H 0.13 5.41 8.06 -2.91 -0.02 5.39 16 33 H 0.30 12.41 8.30 -92.71 -0.77 11.64 16 34 H 0.13 6.39 6.18 -2.91 -0.02 6.37 16 Total: -1.00 -69.07 299.47 4.86 -64.21 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.35 Total: 25.60 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.15 Total: -20.68 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -1.37 Total: -62.69 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.06 Total: -36.77 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 0.75 Total: -8.27 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -69.07 4.86 -64.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181459032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.457 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds