Wall clock time and date at job start Mon Mar 30 2020 00:57:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.37098 * 120.00065 * 2 1
4 4 H 1.07998 * 119.99679 * 142.12700 * 3 2 1
5 5 C 1.38947 * 120.00121 * 322.12503 * 3 2 1
6 6 N 1.31410 * 119.99749 * 157.48086 * 5 3 2
7 7 Si 1.86800 * 120.00300 * 337.48676 * 5 3 2
8 8 H 1.48496 * 109.47095 * 95.61536 * 7 5 3
9 9 H 1.48497 * 109.46873 * 215.61706 * 7 5 3
10 10 H 1.48502 * 109.46768 * 335.61411 * 7 5 3
11 11 C 1.34783 * 119.99863 * 180.02562 * 2 1 3
12 12 O 1.21287 * 119.99965 * 179.97438 * 11 2 1
13 13 C 1.50697 * 119.99697 * 359.97438 * 11 2 1
14 14 H 1.08989 * 109.47730 * 55.00194 * 13 11 2
15 15 O 1.42900 * 109.46841 * 175.00816 * 13 11 2
16 16 C 1.53009 * 109.47014 * 294.99921 * 13 11 2
17 17 C 1.50701 * 109.46966 * 175.00273 * 16 13 11
18 18 C 1.38272 * 119.98781 * 89.99885 * 17 16 13
19 19 C 1.38218 * 120.05327 * 180.02562 * 18 17 16
20 20 C 1.38221 * 120.02468 * 0.25813 * 19 18 17
21 21 C 1.38441 * 119.97302 * 359.47338 * 20 19 18
22 22 F 1.35100 * 120.02632 * 180.25081 * 21 20 19
23 23 C 1.38175 * 119.98956 * 270.02793 * 17 16 13
24 24 H 1.09003 * 109.46998 * 264.18446 * 1 2 3
25 25 H 1.09001 * 109.47083 * 24.17763 * 1 2 3
26 26 H 1.08998 * 109.47218 * 144.18273 * 1 2 3
27 27 H 0.97000 * 119.99889 * 179.97438 * 6 5 3
28 28 H 0.96697 * 114.00718 * 59.99394 * 15 13 11
29 29 H 1.08995 * 109.46853 * 55.00455 * 16 13 11
30 30 H 1.08993 * 109.47257 * 295.00474 * 16 13 11
31 31 H 1.08004 * 119.97262 * 0.02562 * 18 17 16
32 32 H 1.07993 * 119.98666 * 179.97438 * 19 18 17
33 33 H 1.07993 * 120.01560 * 179.71671 * 20 19 18
34 34 H 1.08000 * 120.00826 * 359.97357 * 23 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1873 0.0000
4 1 3.0599 1.2857 0.5742
5 6 1.6753 2.2639 -0.7388
6 7 2.0335 3.4878 -0.4213
7 14 0.5273 1.9717 -2.1831
8 1 -0.8801 2.1294 -1.7365
9 1 0.8199 2.9567 -3.2551
10 1 0.7296 0.5965 -2.7057
11 6 2.1389 -1.1673 -0.0005
12 8 3.3517 -1.1673 -0.0010
13 6 1.3853 -2.4723 -0.0005
14 1 0.6929 -2.4921 -0.8420
15 8 2.3094 -3.5559 -0.1184
16 6 0.6028 -2.6094 1.3072
17 6 -0.2460 -3.8535 1.2566
18 6 0.2648 -5.0574 1.7055
19 6 -0.5124 -6.1995 1.6592
20 6 -1.7996 -6.1403 1.1590
21 6 -2.3140 -4.9344 0.7143
22 9 -3.5738 -4.8744 0.2299
23 6 -1.5343 -3.7910 0.7610
24 1 -0.3633 -0.1041 1.0224
25 1 -0.3633 0.9375 -0.4209
26 1 -0.3633 -0.8333 -0.6014
27 1 1.7020 4.2393 -0.9372
28 1 2.9570 -3.6003 0.5983
29 1 -0.0378 -1.7376 1.4403
30 1 1.2999 -2.6789 2.1421
31 1 1.2719 -5.1055 2.0927
32 1 -0.1122 -7.1393 2.0097
33 1 -2.4051 -7.0336 1.1186
34 1 -1.9331 -2.8505 0.4103
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001184149880.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:57:37
Heat of formation + Delta-G solvation = -92.160434 kcal
Electronic energy + Delta-G solvation = -20241.609894 eV
Core-core repulsion = 16861.616438 eV
Total energy + Delta-G solvation = -3379.993456 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-48.96727 -39.81626 -38.72931 -36.23585 -34.87717 -32.93360 -32.03344 -30.62150
-29.02471 -26.55124 -25.58781 -23.62786 -22.76675 -21.41513 -19.42439 -17.54641
-17.19545 -16.67682 -16.50493 -16.26063 -15.95259 -15.68741 -15.39372 -14.91540
-14.33121 -13.89178 -13.79246 -13.29516 -13.07753 -12.76958 -12.72208 -12.37944
-12.27290 -11.92511 -11.90654 -11.49072 -11.23978 -11.05016 -10.86167 -10.51375
-10.32269 -10.01071 -9.18570 -9.04947 -8.76775 -8.38616 -7.84469 -6.48187
-4.05714 1.07173 1.10338 2.96753 3.16755 3.22110 3.41845 3.61415
4.06931 4.11196 4.27373 4.49592 4.66813 4.71351 4.87441 4.94227
5.10621 5.16491 5.21385 5.30742 5.46265 5.61213 5.72861 5.76353
5.93802 5.97529 5.98768 6.05096 6.19842 6.23871 6.45820 6.80242
7.43393 7.82165 8.18354 8.40301 8.85906 9.21305 9.62731 10.63579
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.025208 B = 0.005505 C = 0.004787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1110.487506 B = 5085.128751 C = 5848.169734
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.057 3.943
2 N -0.463 5.463
3 C -0.321 4.321
4 H 0.106 0.894
5 C 0.062 3.938
6 N -0.859 5.859
7 Si 0.875 3.125
8 H -0.274 1.274
9 H -0.285 1.285
10 H -0.264 1.264
11 C 0.432 3.568
12 O -0.557 6.557
13 C 0.102 3.898
14 H 0.112 0.888
15 O -0.539 6.539
16 C -0.123 4.123
17 C -0.038 4.038
18 C -0.114 4.114
19 C -0.091 4.091
20 C -0.163 4.163
21 C 0.097 3.903
22 F -0.143 7.143
23 C -0.154 4.154
24 H 0.057 0.943
25 H 0.070 0.930
26 H 0.054 0.946
27 H 0.275 0.725
28 H 0.377 0.623
29 H 0.099 0.901
30 H 0.086 0.914
31 H 0.129 0.871
32 H 0.131 0.869
33 H 0.131 0.869
34 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.540 -15.806 4.175 18.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 N -0.186 5.186
3 C -0.448 4.448
4 H 0.124 0.876
5 C -0.145 4.145
6 N -0.495 5.495
7 Si 0.702 3.298
8 H -0.201 1.201
9 H -0.212 1.212
10 H -0.188 1.188
11 C 0.220 3.780
12 O -0.439 6.439
13 C 0.039 3.961
14 H 0.129 0.871
15 O -0.344 6.344
16 C -0.161 4.161
17 C -0.038 4.038
18 C -0.132 4.132
19 C -0.109 4.109
20 C -0.182 4.182
21 C 0.078 3.922
22 F -0.121 7.121
23 C -0.173 4.173
24 H 0.075 0.925
25 H 0.088 0.912
26 H 0.072 0.928
27 H 0.085 0.915
28 H 0.225 0.775
29 H 0.117 0.883
30 H 0.104 0.896
31 H 0.147 0.853
32 H 0.148 0.852
33 H 0.149 0.851
34 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -9.312 -15.696 3.580 18.598
hybrid contribution -0.727 0.262 -0.468 0.903
sum -10.040 -15.434 3.112 18.674
Atomic orbital electron populations
1.22194 0.83580 1.02008 1.00869 1.43722 1.03950 1.05766 1.65144
1.19054 1.10858 0.85496 1.29395 0.87636 1.25371 0.97299 0.94739
0.97050 1.69759 1.43725 0.98168 1.37841 0.86984 0.80071 0.79302
0.83409 1.20110 1.21157 1.18782 1.21035 0.88779 0.85391 0.82782
1.90575 1.13632 1.86534 1.53123 1.21785 0.90366 0.86495 0.97471
0.87062 1.86525 1.46776 1.47970 1.53099 1.21558 0.99306 0.96154
0.99065 1.19635 0.92928 0.95470 0.95772 1.21121 1.00054 0.91871
1.00188 1.20979 0.93069 0.98750 0.98058 1.21094 0.97429 0.96726
1.02942 1.17666 0.80062 0.94933 0.99545 1.91491 1.37680 1.97194
1.85780 1.21076 0.94670 0.98130 1.03402 0.92461 0.91179 0.92758
0.91455 0.77457 0.88280 0.89559 0.85298 0.85151 0.85107 0.84652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.05 7.59 59.85 0.45 1.50 16
2 N -0.46 -10.77 2.57 -122.19 -0.31 -11.08 16
3 C -0.32 -8.91 9.35 -14.93 -0.14 -9.05 16
4 H 0.11 3.30 7.92 -52.49 -0.42 2.88 16
5 C 0.06 1.68 5.26 -17.47 -0.09 1.59 16
6 N -0.86 -24.42 13.96 55.50 0.77 -23.65 16
7 Si 0.88 20.17 25.08 -169.99 -4.26 15.91 16
8 H -0.27 -5.80 6.69 56.52 0.38 -5.42 16
9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
10 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16
11 C 0.43 9.68 7.04 -10.98 -0.08 9.60 16
12 O -0.56 -14.75 16.20 -14.31 -0.23 -14.98 16
13 C 0.10 1.70 2.58 -27.88 -0.07 1.63 16
14 H 0.11 1.80 7.15 -51.94 -0.37 1.43 16
15 O -0.54 -8.87 12.49 -55.09 -0.69 -9.56 16
16 C -0.12 -1.63 4.83 -27.88 -0.13 -1.77 16
17 C -0.04 -0.46 4.97 -104.63 -0.52 -0.98 16
18 C -0.11 -1.22 9.40 -39.58 -0.37 -1.60 16
19 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16
20 C -0.16 -1.67 10.03 -39.51 -0.40 -2.07 16
21 C 0.10 1.16 7.30 -39.42 -0.29 0.87 16
22 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16
23 C -0.15 -1.85 9.68 -39.52 -0.38 -2.23 16
24 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16
25 H 0.07 1.39 3.64 -51.93 -0.19 1.20 16
26 H 0.05 0.83 6.50 -51.93 -0.34 0.49 16
27 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16
28 H 0.38 5.29 8.79 45.56 0.40 5.69 16
29 H 0.10 1.28 4.87 -51.93 -0.25 1.03 16
30 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16
31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16
32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16
34 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16
LS Contribution 290.58 15.07 4.38 4.38
Total: -1.00 -32.56 290.58 -5.50 -38.06
By element:
Atomic # 1 Polarization: 9.21 SS G_CDS: -2.78 Total: 6.43 kcal
Atomic # 6 Polarization: -1.34 SS G_CDS: -2.42 Total: -3.76 kcal
Atomic # 7 Polarization: -35.19 SS G_CDS: 0.46 Total: -34.73 kcal
Atomic # 8 Polarization: -23.62 SS G_CDS: -0.92 Total: -24.54 kcal
Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal
Atomic # 14 Polarization: 20.17 SS G_CDS: -4.26 Total: 15.91 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -32.56 -5.50 -38.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001184149880.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.101 kcal
(2) G-P(sol) polarization free energy of solvation -32.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.497 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.160 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds