Wall clock time and date at job start Mon Mar 30 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37098 * 120.00065 * 2 1 4 4 H 1.07998 * 119.99679 * 142.12700 * 3 2 1 5 5 C 1.38947 * 120.00121 * 322.12503 * 3 2 1 6 6 N 1.31410 * 119.99749 * 157.48086 * 5 3 2 7 7 Si 1.86800 * 120.00300 * 337.48676 * 5 3 2 8 8 H 1.48496 * 109.47095 * 95.61536 * 7 5 3 9 9 H 1.48497 * 109.46873 * 215.61706 * 7 5 3 10 10 H 1.48502 * 109.46768 * 335.61411 * 7 5 3 11 11 C 1.34783 * 119.99863 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99965 * 179.97438 * 11 2 1 13 13 C 1.50697 * 119.99697 * 359.97438 * 11 2 1 14 14 H 1.08989 * 109.47730 * 55.00194 * 13 11 2 15 15 O 1.42900 * 109.46841 * 175.00816 * 13 11 2 16 16 C 1.53009 * 109.47014 * 294.99921 * 13 11 2 17 17 C 1.50701 * 109.46966 * 175.00273 * 16 13 11 18 18 C 1.38272 * 119.98781 * 89.99885 * 17 16 13 19 19 C 1.38218 * 120.05327 * 180.02562 * 18 17 16 20 20 C 1.38221 * 120.02468 * 0.25813 * 19 18 17 21 21 C 1.38441 * 119.97302 * 359.47338 * 20 19 18 22 22 F 1.35100 * 120.02632 * 180.25081 * 21 20 19 23 23 C 1.38175 * 119.98956 * 270.02793 * 17 16 13 24 24 H 1.09003 * 109.46998 * 264.18446 * 1 2 3 25 25 H 1.09001 * 109.47083 * 24.17763 * 1 2 3 26 26 H 1.08998 * 109.47218 * 144.18273 * 1 2 3 27 27 H 0.97000 * 119.99889 * 179.97438 * 6 5 3 28 28 H 0.96697 * 114.00718 * 59.99394 * 15 13 11 29 29 H 1.08995 * 109.46853 * 55.00455 * 16 13 11 30 30 H 1.08993 * 109.47257 * 295.00474 * 16 13 11 31 31 H 1.08004 * 119.97262 * 0.02562 * 18 17 16 32 32 H 1.07993 * 119.98666 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.01560 * 179.71671 * 20 19 18 34 34 H 1.08000 * 120.00826 * 359.97357 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0599 1.2857 0.5742 5 6 1.6753 2.2639 -0.7388 6 7 2.0335 3.4878 -0.4213 7 14 0.5273 1.9717 -2.1831 8 1 -0.8801 2.1294 -1.7365 9 1 0.8199 2.9567 -3.2551 10 1 0.7296 0.5965 -2.7057 11 6 2.1389 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 1 0.6929 -2.4921 -0.8420 15 8 2.3094 -3.5559 -0.1184 16 6 0.6028 -2.6094 1.3072 17 6 -0.2460 -3.8535 1.2566 18 6 0.2648 -5.0574 1.7055 19 6 -0.5124 -6.1995 1.6592 20 6 -1.7996 -6.1403 1.1590 21 6 -2.3140 -4.9344 0.7143 22 9 -3.5738 -4.8744 0.2299 23 6 -1.5343 -3.7910 0.7610 24 1 -0.3633 -0.1041 1.0224 25 1 -0.3633 0.9375 -0.4209 26 1 -0.3633 -0.8333 -0.6014 27 1 1.7020 4.2393 -0.9372 28 1 2.9570 -3.6003 0.5983 29 1 -0.0378 -1.7376 1.4403 30 1 1.2999 -2.6789 2.1421 31 1 1.2719 -5.1055 2.0927 32 1 -0.1122 -7.1393 2.0097 33 1 -2.4051 -7.0336 1.1186 34 1 -1.9331 -2.8505 0.4103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184149880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:37 Heat of formation + Delta-G solvation = -92.160434 kcal Electronic energy + Delta-G solvation = -20241.609894 eV Core-core repulsion = 16861.616438 eV Total energy + Delta-G solvation = -3379.993456 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.96727 -39.81626 -38.72931 -36.23585 -34.87717 -32.93360 -32.03344 -30.62150 -29.02471 -26.55124 -25.58781 -23.62786 -22.76675 -21.41513 -19.42439 -17.54641 -17.19545 -16.67682 -16.50493 -16.26063 -15.95259 -15.68741 -15.39372 -14.91540 -14.33121 -13.89178 -13.79246 -13.29516 -13.07753 -12.76958 -12.72208 -12.37944 -12.27290 -11.92511 -11.90654 -11.49072 -11.23978 -11.05016 -10.86167 -10.51375 -10.32269 -10.01071 -9.18570 -9.04947 -8.76775 -8.38616 -7.84469 -6.48187 -4.05714 1.07173 1.10338 2.96753 3.16755 3.22110 3.41845 3.61415 4.06931 4.11196 4.27373 4.49592 4.66813 4.71351 4.87441 4.94227 5.10621 5.16491 5.21385 5.30742 5.46265 5.61213 5.72861 5.76353 5.93802 5.97529 5.98768 6.05096 6.19842 6.23871 6.45820 6.80242 7.43393 7.82165 8.18354 8.40301 8.85906 9.21305 9.62731 10.63579 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025208 B = 0.005505 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.487506 B = 5085.128751 C = 5848.169734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.463 5.463 3 C -0.321 4.321 4 H 0.106 0.894 5 C 0.062 3.938 6 N -0.859 5.859 7 Si 0.875 3.125 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.264 1.264 11 C 0.432 3.568 12 O -0.557 6.557 13 C 0.102 3.898 14 H 0.112 0.888 15 O -0.539 6.539 16 C -0.123 4.123 17 C -0.038 4.038 18 C -0.114 4.114 19 C -0.091 4.091 20 C -0.163 4.163 21 C 0.097 3.903 22 F -0.143 7.143 23 C -0.154 4.154 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.275 0.725 28 H 0.377 0.623 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 -15.806 4.175 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.186 5.186 3 C -0.448 4.448 4 H 0.124 0.876 5 C -0.145 4.145 6 N -0.495 5.495 7 Si 0.702 3.298 8 H -0.201 1.201 9 H -0.212 1.212 10 H -0.188 1.188 11 C 0.220 3.780 12 O -0.439 6.439 13 C 0.039 3.961 14 H 0.129 0.871 15 O -0.344 6.344 16 C -0.161 4.161 17 C -0.038 4.038 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.182 4.182 21 C 0.078 3.922 22 F -0.121 7.121 23 C -0.173 4.173 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.225 0.775 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.312 -15.696 3.580 18.598 hybrid contribution -0.727 0.262 -0.468 0.903 sum -10.040 -15.434 3.112 18.674 Atomic orbital electron populations 1.22194 0.83580 1.02008 1.00869 1.43722 1.03950 1.05766 1.65144 1.19054 1.10858 0.85496 1.29395 0.87636 1.25371 0.97299 0.94739 0.97050 1.69759 1.43725 0.98168 1.37841 0.86984 0.80071 0.79302 0.83409 1.20110 1.21157 1.18782 1.21035 0.88779 0.85391 0.82782 1.90575 1.13632 1.86534 1.53123 1.21785 0.90366 0.86495 0.97471 0.87062 1.86525 1.46776 1.47970 1.53099 1.21558 0.99306 0.96154 0.99065 1.19635 0.92928 0.95470 0.95772 1.21121 1.00054 0.91871 1.00188 1.20979 0.93069 0.98750 0.98058 1.21094 0.97429 0.96726 1.02942 1.17666 0.80062 0.94933 0.99545 1.91491 1.37680 1.97194 1.85780 1.21076 0.94670 0.98130 1.03402 0.92461 0.91179 0.92758 0.91455 0.77457 0.88280 0.89559 0.85298 0.85151 0.85107 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 7.59 59.85 0.45 1.50 16 2 N -0.46 -10.77 2.57 -122.19 -0.31 -11.08 16 3 C -0.32 -8.91 9.35 -14.93 -0.14 -9.05 16 4 H 0.11 3.30 7.92 -52.49 -0.42 2.88 16 5 C 0.06 1.68 5.26 -17.47 -0.09 1.59 16 6 N -0.86 -24.42 13.96 55.50 0.77 -23.65 16 7 Si 0.88 20.17 25.08 -169.99 -4.26 15.91 16 8 H -0.27 -5.80 6.69 56.52 0.38 -5.42 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.43 9.68 7.04 -10.98 -0.08 9.60 16 12 O -0.56 -14.75 16.20 -14.31 -0.23 -14.98 16 13 C 0.10 1.70 2.58 -27.88 -0.07 1.63 16 14 H 0.11 1.80 7.15 -51.94 -0.37 1.43 16 15 O -0.54 -8.87 12.49 -55.09 -0.69 -9.56 16 16 C -0.12 -1.63 4.83 -27.88 -0.13 -1.77 16 17 C -0.04 -0.46 4.97 -104.63 -0.52 -0.98 16 18 C -0.11 -1.22 9.40 -39.58 -0.37 -1.60 16 19 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 20 C -0.16 -1.67 10.03 -39.51 -0.40 -2.07 16 21 C 0.10 1.16 7.30 -39.42 -0.29 0.87 16 22 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 23 C -0.15 -1.85 9.68 -39.52 -0.38 -2.23 16 24 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 25 H 0.07 1.39 3.64 -51.93 -0.19 1.20 16 26 H 0.05 0.83 6.50 -51.93 -0.34 0.49 16 27 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.38 5.29 8.79 45.56 0.40 5.69 16 29 H 0.10 1.28 4.87 -51.93 -0.25 1.03 16 30 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 290.58 15.07 4.38 4.38 Total: -1.00 -32.56 290.58 -5.50 -38.06 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.78 Total: 6.43 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.42 Total: -3.76 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.46 Total: -34.73 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.92 Total: -24.54 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.26 Total: 15.91 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.56 -5.50 -38.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184149880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.101 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds