Wall clock time and date at job start Mon Mar 30 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37098 * 120.00065 * 2 1 4 4 H 1.07998 * 119.99679 * 142.12700 * 3 2 1 5 5 C 1.38947 * 120.00121 * 322.12503 * 3 2 1 6 6 N 1.31410 * 119.99749 * 157.48086 * 5 3 2 7 7 Si 1.86800 * 120.00300 * 337.48676 * 5 3 2 8 8 H 1.48496 * 109.47095 * 95.61536 * 7 5 3 9 9 H 1.48497 * 109.46873 * 215.61706 * 7 5 3 10 10 H 1.48502 * 109.46768 * 335.61411 * 7 5 3 11 11 C 1.34783 * 119.99863 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99965 * 179.97438 * 11 2 1 13 13 C 1.50697 * 119.99697 * 359.97438 * 11 2 1 14 14 H 1.08989 * 109.47730 * 55.00194 * 13 11 2 15 15 O 1.42900 * 109.46841 * 175.00816 * 13 11 2 16 16 C 1.53009 * 109.47014 * 294.99921 * 13 11 2 17 17 C 1.50701 * 109.46966 * 175.00273 * 16 13 11 18 18 C 1.38272 * 119.98781 * 89.99885 * 17 16 13 19 19 C 1.38218 * 120.05327 * 180.02562 * 18 17 16 20 20 C 1.38221 * 120.02468 * 0.25813 * 19 18 17 21 21 C 1.38441 * 119.97302 * 359.47338 * 20 19 18 22 22 F 1.35100 * 120.02632 * 180.25081 * 21 20 19 23 23 C 1.38175 * 119.98956 * 270.02793 * 17 16 13 24 24 H 1.09003 * 109.46998 * 264.18446 * 1 2 3 25 25 H 1.09001 * 109.47083 * 24.17763 * 1 2 3 26 26 H 1.08998 * 109.47218 * 144.18273 * 1 2 3 27 27 H 0.97000 * 119.99889 * 179.97438 * 6 5 3 28 28 H 0.96697 * 114.00718 * 59.99394 * 15 13 11 29 29 H 1.08995 * 109.46853 * 55.00455 * 16 13 11 30 30 H 1.08993 * 109.47257 * 295.00474 * 16 13 11 31 31 H 1.08004 * 119.97262 * 0.02562 * 18 17 16 32 32 H 1.07993 * 119.98666 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.01560 * 179.71671 * 20 19 18 34 34 H 1.08000 * 120.00826 * 359.97357 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0599 1.2857 0.5742 5 6 1.6753 2.2639 -0.7388 6 7 2.0335 3.4878 -0.4213 7 14 0.5273 1.9717 -2.1831 8 1 -0.8801 2.1294 -1.7365 9 1 0.8199 2.9567 -3.2551 10 1 0.7296 0.5965 -2.7057 11 6 2.1389 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 1 0.6929 -2.4921 -0.8420 15 8 2.3094 -3.5559 -0.1184 16 6 0.6028 -2.6094 1.3072 17 6 -0.2460 -3.8535 1.2566 18 6 0.2648 -5.0574 1.7055 19 6 -0.5124 -6.1995 1.6592 20 6 -1.7996 -6.1403 1.1590 21 6 -2.3140 -4.9344 0.7143 22 9 -3.5738 -4.8744 0.2299 23 6 -1.5343 -3.7910 0.7610 24 1 -0.3633 -0.1041 1.0224 25 1 -0.3633 0.9375 -0.4209 26 1 -0.3633 -0.8333 -0.6014 27 1 1.7020 4.2393 -0.9372 28 1 2.9570 -3.6003 0.5983 29 1 -0.0378 -1.7376 1.4403 30 1 1.2999 -2.6789 2.1421 31 1 1.2719 -5.1055 2.0927 32 1 -0.1122 -7.1393 2.0097 33 1 -2.4051 -7.0336 1.1186 34 1 -1.9331 -2.8505 0.4103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184149880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:37 Heat of formation + Delta-G solvation = -114.892942 kcal Electronic energy + Delta-G solvation = -20242.595649 eV Core-core repulsion = 16861.616438 eV Total energy + Delta-G solvation = -3380.979211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.84186 -41.19917 -39.87549 -37.65825 -36.67742 -34.40063 -33.61189 -31.42609 -30.24240 -28.15227 -27.16867 -25.08664 -23.58133 -22.34400 -21.10239 -19.18730 -18.60950 -18.09372 -17.75082 -17.25612 -17.05064 -16.92524 -16.56950 -16.33307 -15.66765 -15.35383 -14.86383 -14.59191 -14.47034 -14.21785 -14.17742 -13.93141 -13.56362 -13.19507 -12.88607 -12.70141 -12.65395 -12.45800 -12.27322 -11.94853 -11.87413 -11.65008 -11.06491 -10.30302 -9.82016 -9.75211 -9.53985 -8.55888 -6.18701 0.24346 0.30688 1.17084 1.30826 1.42842 1.81435 2.14253 2.56151 2.72461 2.89847 3.22002 3.40358 3.66415 3.83664 3.90133 4.05551 4.10161 4.23013 4.27975 4.34608 4.46342 4.51914 4.61478 4.80063 4.88677 5.06125 5.17923 5.21886 5.42565 5.47647 5.61373 5.99461 6.01059 6.43870 6.67089 6.88319 7.22981 7.76712 8.61150 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025208 B = 0.005505 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.487506 B = 5085.128751 C = 5848.169734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.473 5.473 3 C -0.341 4.341 4 H 0.046 0.954 5 C 0.016 3.984 6 N -0.906 5.906 7 Si 0.945 3.055 8 H -0.235 1.235 9 H -0.289 1.289 10 H -0.261 1.261 11 C 0.426 3.574 12 O -0.611 6.611 13 C 0.119 3.881 14 H 0.125 0.875 15 O -0.545 6.545 16 C -0.111 4.111 17 C -0.050 4.050 18 C -0.118 4.118 19 C -0.088 4.088 20 C -0.160 4.160 21 C 0.077 3.923 22 F -0.151 7.151 23 C -0.161 4.161 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.281 0.719 28 H 0.387 0.613 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 -18.132 3.769 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.196 5.196 3 C -0.468 4.468 4 H 0.064 0.936 5 C -0.187 4.187 6 N -0.543 5.543 7 Si 0.768 3.232 8 H -0.159 1.159 9 H -0.216 1.216 10 H -0.185 1.185 11 C 0.216 3.784 12 O -0.496 6.496 13 C 0.056 3.944 14 H 0.142 0.858 15 O -0.350 6.350 16 C -0.148 4.148 17 C -0.050 4.050 18 C -0.136 4.136 19 C -0.106 4.106 20 C -0.179 4.179 21 C 0.058 3.942 22 F -0.129 7.129 23 C -0.180 4.180 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.237 0.763 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.856 -18.035 3.200 21.819 hybrid contribution 0.146 0.912 -0.249 0.957 sum -11.710 -17.122 2.951 20.953 Atomic orbital electron populations 1.22470 0.80220 1.02972 1.03647 1.43831 1.05992 1.04555 1.65238 1.18677 1.10150 0.88062 1.29957 0.93583 1.26137 0.99438 0.93881 0.99239 1.69867 1.45879 0.99303 1.39225 0.85895 0.79773 0.78863 0.78693 1.15897 1.21595 1.18535 1.22171 0.88552 0.87119 0.80605 1.90538 1.16331 1.87687 1.55011 1.21681 0.89888 0.82853 0.99997 0.85776 1.86499 1.47233 1.47267 1.54022 1.21387 0.99177 0.97298 0.96974 1.19486 0.92933 0.95226 0.97367 1.21398 1.00852 0.91822 0.99576 1.21318 0.92563 0.99582 0.97103 1.21420 0.97887 0.96900 1.01693 1.17895 0.80009 0.95718 1.00595 1.91470 1.38173 1.97272 1.86033 1.21207 0.94726 0.98694 1.03389 0.89450 0.92228 0.89000 0.90899 0.76315 0.87815 0.89094 0.84020 0.82238 0.83137 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.66 7.59 127.77 0.97 2.63 16 2 N -0.47 -21.94 2.57 -658.89 -1.69 -23.63 16 3 C -0.34 -19.65 9.35 84.04 0.79 -18.87 16 4 H 0.05 3.12 7.92 -2.91 -0.02 3.10 16 5 C 0.02 0.89 5.26 84.93 0.45 1.33 16 6 N -0.91 -53.08 13.96 21.66 0.30 -52.77 16 7 Si 0.94 40.94 25.08 68.60 1.72 42.66 16 8 H -0.23 -8.68 6.69 99.48 0.67 -8.01 16 9 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 C 0.43 19.04 7.04 87.66 0.62 19.65 16 12 O -0.61 -33.42 16.20 15.94 0.26 -33.16 16 13 C 0.12 3.72 2.58 29.85 0.08 3.79 16 14 H 0.12 3.61 7.15 -2.39 -0.02 3.59 16 15 O -0.54 -16.91 12.49 -129.99 -1.62 -18.53 16 16 C -0.11 -2.65 4.83 29.85 0.14 -2.50 16 17 C -0.05 -1.05 4.97 -19.87 -0.10 -1.15 16 18 C -0.12 -2.15 9.40 22.27 0.21 -1.94 16 19 C -0.09 -1.35 10.04 22.26 0.22 -1.12 16 20 C -0.16 -2.75 10.03 22.31 0.22 -2.52 16 21 C 0.08 1.62 7.30 22.38 0.16 1.79 16 22 F -0.15 -3.46 17.27 44.97 0.78 -2.68 16 23 C -0.16 -3.40 9.68 22.31 0.22 -3.19 16 24 H 0.09 2.45 6.56 -2.39 -0.02 2.43 16 25 H 0.06 2.17 3.64 -2.39 -0.01 2.16 16 26 H 0.09 2.43 6.50 -2.39 -0.02 2.41 16 27 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.39 10.37 8.79 -74.06 -0.65 9.72 16 29 H 0.10 2.37 4.87 -2.39 -0.01 2.36 16 30 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 31 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -74.52 290.58 4.17 -70.35 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.45 Total: 19.86 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 3.98 Total: -2.10 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.39 Total: -76.41 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -1.37 Total: -51.69 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.72 Total: 42.66 kcal Total: -74.52 4.17 -70.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184149880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.542 kcal (2) G-P(sol) polarization free energy of solvation -74.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds