Wall clock time and date at job start Mon Mar 30 2020 00:44:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46504 * 109.47195 * 2 1
4 4 C 1.46493 * 120.00203 * 270.00319 * 3 2 1
5 5 C 1.50701 * 109.47191 * 270.00019 * 4 3 2
6 6 H 1.07997 * 119.99856 * 359.97438 * 5 4 3
7 7 C 1.37878 * 120.00294 * 179.97438 * 5 4 3
8 8 N 1.31520 * 119.99832 * 0.02562 * 7 5 4
9 9 Si 1.86795 * 120.00051 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.47211 * 60.00359 * 9 7 5
11 11 H 1.48505 * 109.47196 * 180.02562 * 9 7 5
12 12 H 1.48498 * 109.47230 * 300.00183 * 9 7 5
13 13 C 1.34777 * 119.99567 * 89.99962 * 3 2 1
14 14 O 1.21524 * 119.99539 * 179.97438 * 13 3 2
15 15 O 1.34667 * 120.00404 * 0.02562 * 13 3 2
16 16 C 1.35971 * 116.99906 * 175.09186 * 15 13 3
17 17 C 1.38710 * 120.02867 * 256.79660 * 16 15 13
18 18 C 1.38148 * 119.96793 * 179.81730 * 17 16 15
19 19 C 1.38458 * 120.02984 * 0.43705 * 18 17 16
20 20 F 1.35101 * 119.96700 * 179.77139 * 19 18 17
21 21 C 1.38459 * 120.05907 * 359.79249 * 19 18 17
22 22 C 1.38147 * 120.02971 * 0.02562 * 21 19 18
23 23 H 1.08997 * 109.46958 * 299.99908 * 1 2 3
24 24 H 1.08996 * 109.47497 * 59.99738 * 1 2 3
25 25 H 1.08998 * 109.47242 * 179.97438 * 1 2 3
26 26 H 1.09003 * 109.46932 * 240.00560 * 2 1 3
27 27 H 1.08996 * 109.47497 * 120.00262 * 2 1 3
28 28 H 1.09008 * 109.47144 * 29.99868 * 4 3 2
29 29 H 1.09000 * 109.47716 * 149.99984 * 4 3 2
30 30 H 0.96997 * 119.99683 * 180.02562 * 8 7 5
31 31 H 1.07995 * 120.01276 * 0.02562 * 17 16 15
32 32 H 1.07999 * 119.97703 * 180.20796 * 18 17 16
33 33 H 1.07996 * 119.98366 * 179.97438 * 21 19 18
34 34 H 1.07999 * 120.01474 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0719 -1.2686
5 6 3.6857 1.8351 -1.7038
6 1 4.3428 1.2309 -1.0958
7 6 4.1490 2.3897 -2.8780
8 7 3.3490 3.1259 -3.6181
9 14 5.9134 2.0968 -3.4169
10 1 6.1416 0.6401 -3.5938
11 1 6.1609 2.7968 -4.7030
12 1 6.8406 2.6210 -2.3822
13 6 2.2430 2.0165 1.1673
14 8 2.6485 3.1621 1.1672
15 8 2.0190 1.3815 2.3335
16 6 2.3623 2.0416 3.4716
17 6 3.5206 1.6960 4.1520
18 6 3.8701 2.3700 5.3061
19 6 3.0602 3.3840 5.7887
20 9 3.4008 4.0392 6.9200
21 6 1.9012 3.7267 5.1131
22 6 1.5513 3.0569 3.9567
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8899
25 1 -0.3633 -1.0276 -0.0005
26 1 1.8933 -0.5138 -0.8901
27 1 1.8934 -0.5138 0.8899
28 1 1.5816 1.6878 -2.0283
29 1 2.0955 3.1411 -1.1384
30 1 3.6748 3.5158 -4.4443
31 1 4.1506 0.9027 3.7778
32 1 4.7737 2.1033 5.8341
33 1 1.2701 4.5175 5.4908
34 1 0.6470 3.3241 3.4301
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001195022009.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:35
Heat of formation + Delta-G solvation = -89.778469 kcal
Electronic energy + Delta-G solvation = -19938.649314 eV
Core-core repulsion = 16558.759148 eV
Total energy + Delta-G solvation = -3379.890166 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-48.96711 -40.81378 -38.54802 -36.57623 -35.28943 -32.81134 -31.29206 -30.21911
-29.67018 -27.20895 -23.89883 -23.26289 -23.05160 -22.13447 -20.04269 -17.89030
-17.50793 -17.20753 -16.84064 -16.43331 -15.64513 -15.24483 -15.01905 -14.56457
-14.19425 -13.74991 -13.68698 -13.45090 -13.20803 -12.92212 -12.61921 -12.14868
-12.01176 -11.75155 -11.47499 -11.25181 -10.98761 -10.76199 -10.60092 -10.51948
-10.21419 -9.84105 -9.71091 -9.22672 -8.55220 -8.49463 -7.88967 -6.11234
-4.16562 0.89273 1.12392 2.73234 3.29168 3.33736 3.35668 3.42808
3.63583 4.15967 4.35960 4.50910 4.65430 4.74626 5.10326 5.23335
5.26524 5.39223 5.51980 5.64896 5.76771 5.80103 5.99130 6.02937
6.11688 6.21574 6.28506 6.48688 6.51066 6.92413 7.04736 7.33680
7.38027 7.84205 8.11974 8.20137 8.81746 9.03850 9.48925 10.96904
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.021063 B = 0.005000 C = 0.004410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.053824 B = 5598.121575 C = 6347.650920
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.109 3.891
3 N -0.570 5.570
4 C 0.259 3.741
5 C -0.533 4.533
6 H 0.059 0.941
7 C 0.064 3.936
8 N -0.894 5.894
9 Si 0.900 3.100
10 H -0.276 1.276
11 H -0.285 1.285
12 H -0.276 1.276
13 C 0.635 3.365
14 O -0.553 6.553
15 O -0.315 6.315
16 C 0.110 3.890
17 C -0.092 4.092
18 C -0.140 4.140
19 C 0.091 3.909
20 F -0.140 7.140
21 C -0.139 4.139
22 C -0.089 4.089
23 H 0.052 0.948
24 H 0.059 0.941
25 H 0.061 0.939
26 H 0.085 0.915
27 H 0.071 0.929
28 H 0.042 0.958
29 H 0.047 0.953
30 H 0.265 0.735
31 H 0.141 0.859
32 H 0.141 0.859
33 H 0.140 0.860
34 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.285 -4.933 14.587 15.984
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C -0.014 4.014
3 N -0.309 5.309
4 C 0.142 3.858
5 C -0.571 4.571
6 H 0.077 0.923
7 C -0.139 4.139
8 N -0.532 5.532
9 Si 0.728 3.272
10 H -0.201 1.201
11 H -0.211 1.211
12 H -0.202 1.202
13 C 0.389 3.611
14 O -0.439 6.439
15 O -0.229 6.229
16 C 0.067 3.933
17 C -0.111 4.111
18 C -0.159 4.159
19 C 0.072 3.928
20 F -0.119 7.119
21 C -0.158 4.158
22 C -0.108 4.108
23 H 0.071 0.929
24 H 0.078 0.922
25 H 0.080 0.920
26 H 0.104 0.896
27 H 0.089 0.911
28 H 0.060 0.940
29 H 0.065 0.935
30 H 0.075 0.925
31 H 0.159 0.841
32 H 0.159 0.841
33 H 0.158 0.842
34 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -4.163 -4.412 14.444 15.666
hybrid contribution 1.025 0.034 -0.232 1.051
sum -3.138 -4.379 14.212 15.199
Atomic orbital electron populations
1.22182 0.96562 1.01560 1.02244 1.21454 0.93760 0.83133 1.03084
1.47393 1.65589 1.13989 1.03896 1.19428 0.96773 0.93550 0.76043
1.21390 0.96756 1.32449 1.06544 0.92315 1.24915 0.98013 0.94729
0.96232 1.69917 1.35826 1.33129 1.14348 0.86520 0.84514 0.78331
0.77856 1.20142 1.21090 1.20151 1.18426 0.78530 0.83748 0.80412
1.91008 1.50355 1.16891 1.85671 1.84300 1.78669 1.47148 1.12774
1.18299 0.94214 0.94563 0.86244 1.21078 0.94544 1.00294 0.95152
1.20947 1.00726 0.96533 0.97693 1.17691 0.95856 0.94363 0.84869
1.91491 1.92211 1.79897 1.48314 1.20960 0.96799 1.01842 0.96232
1.21218 1.00216 0.93866 0.95499 0.92903 0.92172 0.92023 0.89645
0.91075 0.93963 0.93538 0.92507 0.84121 0.84087 0.84191 0.84421
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16
2 C 0.11 1.81 6.13 -4.04 -0.02 1.78 16
3 N -0.57 -12.20 2.46 -180.85 -0.44 -12.64 16
4 C 0.26 6.62 5.16 -5.20 -0.03 6.59 16
5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16
6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16
7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16
8 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16
9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16
10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
13 C 0.64 13.81 8.27 54.06 0.45 14.25 16
14 O -0.55 -14.04 15.46 -19.29 -0.30 -14.33 16
15 O -0.32 -5.65 8.85 -24.81 -0.22 -5.87 16
16 C 0.11 1.77 5.14 -39.24 -0.20 1.56 16
17 C -0.09 -1.27 9.99 -39.44 -0.39 -1.67 16
18 C -0.14 -1.71 10.02 -39.53 -0.40 -2.11 16
19 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16
20 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16
21 C -0.14 -1.75 10.02 -39.53 -0.40 -2.15 16
22 C -0.09 -1.29 9.57 -39.44 -0.38 -1.66 16
23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
26 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16
27 H 0.07 1.06 7.37 -51.93 -0.38 0.68 16
28 H 0.04 1.07 8.07 -51.92 -0.42 0.65 16
29 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16
30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16
31 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16
32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16
33 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16
34 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16
LS Contribution 308.58 15.07 4.65 4.65
Total: -1.00 -31.60 308.58 -6.37 -37.96
By element:
Atomic # 1 Polarization: 2.71 SS G_CDS: -4.11 Total: -1.40 kcal
Atomic # 6 Polarization: 3.80 SS G_CDS: -1.70 Total: 2.11 kcal
Atomic # 7 Polarization: -38.17 SS G_CDS: 0.29 Total: -37.88 kcal
Atomic # 8 Polarization: -19.69 SS G_CDS: -0.52 Total: -20.20 kcal
Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -31.60 -6.37 -37.96 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001195022009.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.815 kcal
(2) G-P(sol) polarization free energy of solvation -31.597 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.412 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds