Wall clock time and date at job start Mon Mar 30 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47195 * 2 1 4 4 C 1.46493 * 120.00203 * 270.00319 * 3 2 1 5 5 C 1.50701 * 109.47191 * 270.00019 * 4 3 2 6 6 H 1.07997 * 119.99856 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00051 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47211 * 60.00359 * 9 7 5 11 11 H 1.48505 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47230 * 300.00183 * 9 7 5 13 13 C 1.34777 * 119.99567 * 89.99962 * 3 2 1 14 14 O 1.21524 * 119.99539 * 179.97438 * 13 3 2 15 15 O 1.34667 * 120.00404 * 0.02562 * 13 3 2 16 16 C 1.35971 * 116.99906 * 175.09186 * 15 13 3 17 17 C 1.38710 * 120.02867 * 256.79660 * 16 15 13 18 18 C 1.38148 * 119.96793 * 179.81730 * 17 16 15 19 19 C 1.38458 * 120.02984 * 0.43705 * 18 17 16 20 20 F 1.35101 * 119.96700 * 179.77139 * 19 18 17 21 21 C 1.38459 * 120.05907 * 359.79249 * 19 18 17 22 22 C 1.38147 * 120.02971 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.46958 * 299.99908 * 1 2 3 24 24 H 1.08996 * 109.47497 * 59.99738 * 1 2 3 25 25 H 1.08998 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46932 * 240.00560 * 2 1 3 27 27 H 1.08996 * 109.47497 * 120.00262 * 2 1 3 28 28 H 1.09008 * 109.47144 * 29.99868 * 4 3 2 29 29 H 1.09000 * 109.47716 * 149.99984 * 4 3 2 30 30 H 0.96997 * 119.99683 * 180.02562 * 8 7 5 31 31 H 1.07995 * 120.01276 * 0.02562 * 17 16 15 32 32 H 1.07999 * 119.97703 * 180.20796 * 18 17 16 33 33 H 1.07996 * 119.98366 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.01474 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1259 -3.6181 9 14 5.9134 2.0968 -3.4169 10 1 6.1416 0.6401 -3.5938 11 1 6.1609 2.7968 -4.7030 12 1 6.8406 2.6210 -2.3822 13 6 2.2430 2.0165 1.1673 14 8 2.6485 3.1621 1.1672 15 8 2.0190 1.3815 2.3335 16 6 2.3623 2.0416 3.4716 17 6 3.5206 1.6960 4.1520 18 6 3.8701 2.3700 5.3061 19 6 3.0602 3.3840 5.7887 20 9 3.4008 4.0392 6.9200 21 6 1.9012 3.7267 5.1131 22 6 1.5513 3.0569 3.9567 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.5816 1.6878 -2.0283 29 1 2.0955 3.1411 -1.1384 30 1 3.6748 3.5158 -4.4443 31 1 4.1506 0.9027 3.7778 32 1 4.7737 2.1033 5.8341 33 1 1.2701 4.5175 5.4908 34 1 0.6470 3.3241 3.4301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195022009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:35 Heat of formation + Delta-G solvation = -89.778469 kcal Electronic energy + Delta-G solvation = -19938.649314 eV Core-core repulsion = 16558.759148 eV Total energy + Delta-G solvation = -3379.890166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.96711 -40.81378 -38.54802 -36.57623 -35.28943 -32.81134 -31.29206 -30.21911 -29.67018 -27.20895 -23.89883 -23.26289 -23.05160 -22.13447 -20.04269 -17.89030 -17.50793 -17.20753 -16.84064 -16.43331 -15.64513 -15.24483 -15.01905 -14.56457 -14.19425 -13.74991 -13.68698 -13.45090 -13.20803 -12.92212 -12.61921 -12.14868 -12.01176 -11.75155 -11.47499 -11.25181 -10.98761 -10.76199 -10.60092 -10.51948 -10.21419 -9.84105 -9.71091 -9.22672 -8.55220 -8.49463 -7.88967 -6.11234 -4.16562 0.89273 1.12392 2.73234 3.29168 3.33736 3.35668 3.42808 3.63583 4.15967 4.35960 4.50910 4.65430 4.74626 5.10326 5.23335 5.26524 5.39223 5.51980 5.64896 5.76771 5.80103 5.99130 6.02937 6.11688 6.21574 6.28506 6.48688 6.51066 6.92413 7.04736 7.33680 7.38027 7.84205 8.11974 8.20137 8.81746 9.03850 9.48925 10.96904 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.005000 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.053824 B = 5598.121575 C = 6347.650920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.570 5.570 4 C 0.259 3.741 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.635 3.365 14 O -0.553 6.553 15 O -0.315 6.315 16 C 0.110 3.890 17 C -0.092 4.092 18 C -0.140 4.140 19 C 0.091 3.909 20 F -0.140 7.140 21 C -0.139 4.139 22 C -0.089 4.089 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -4.933 14.587 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.014 4.014 3 N -0.309 5.309 4 C 0.142 3.858 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.389 3.611 14 O -0.439 6.439 15 O -0.229 6.229 16 C 0.067 3.933 17 C -0.111 4.111 18 C -0.159 4.159 19 C 0.072 3.928 20 F -0.119 7.119 21 C -0.158 4.158 22 C -0.108 4.108 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.163 -4.412 14.444 15.666 hybrid contribution 1.025 0.034 -0.232 1.051 sum -3.138 -4.379 14.212 15.199 Atomic orbital electron populations 1.22182 0.96562 1.01560 1.02244 1.21454 0.93760 0.83133 1.03084 1.47393 1.65589 1.13989 1.03896 1.19428 0.96773 0.93550 0.76043 1.21390 0.96756 1.32449 1.06544 0.92315 1.24915 0.98013 0.94729 0.96232 1.69917 1.35826 1.33129 1.14348 0.86520 0.84514 0.78331 0.77856 1.20142 1.21090 1.20151 1.18426 0.78530 0.83748 0.80412 1.91008 1.50355 1.16891 1.85671 1.84300 1.78669 1.47148 1.12774 1.18299 0.94214 0.94563 0.86244 1.21078 0.94544 1.00294 0.95152 1.20947 1.00726 0.96533 0.97693 1.17691 0.95856 0.94363 0.84869 1.91491 1.92211 1.79897 1.48314 1.20960 0.96799 1.01842 0.96232 1.21218 1.00216 0.93866 0.95499 0.92903 0.92172 0.92023 0.89645 0.91075 0.93963 0.93538 0.92507 0.84121 0.84087 0.84191 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.81 6.13 -4.04 -0.02 1.78 16 3 N -0.57 -12.20 2.46 -180.85 -0.44 -12.64 16 4 C 0.26 6.62 5.16 -5.20 -0.03 6.59 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.64 13.81 8.27 54.06 0.45 14.25 16 14 O -0.55 -14.04 15.46 -19.29 -0.30 -14.33 16 15 O -0.32 -5.65 8.85 -24.81 -0.22 -5.87 16 16 C 0.11 1.77 5.14 -39.24 -0.20 1.56 16 17 C -0.09 -1.27 9.99 -39.44 -0.39 -1.67 16 18 C -0.14 -1.71 10.02 -39.53 -0.40 -2.11 16 19 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 20 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 21 C -0.14 -1.75 10.02 -39.53 -0.40 -2.15 16 22 C -0.09 -1.29 9.57 -39.44 -0.38 -1.66 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 27 H 0.07 1.06 7.37 -51.93 -0.38 0.68 16 28 H 0.04 1.07 8.07 -51.92 -0.42 0.65 16 29 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -31.60 308.58 -6.37 -37.96 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.11 Total: -1.40 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.70 Total: 2.11 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.29 Total: -37.88 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.52 Total: -20.20 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.60 -6.37 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195022009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.815 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds