Wall clock time and date at job start Mon Mar 30 2020 00:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47195 * 2 1 4 4 C 1.46493 * 120.00203 * 270.00319 * 3 2 1 5 5 C 1.50701 * 109.47191 * 270.00019 * 4 3 2 6 6 H 1.07997 * 119.99856 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00051 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47211 * 60.00359 * 9 7 5 11 11 H 1.48505 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47230 * 300.00183 * 9 7 5 13 13 C 1.34777 * 119.99567 * 89.99962 * 3 2 1 14 14 O 1.21524 * 119.99539 * 179.97438 * 13 3 2 15 15 O 1.34667 * 120.00404 * 0.02562 * 13 3 2 16 16 C 1.35971 * 116.99906 * 175.09186 * 15 13 3 17 17 C 1.38710 * 120.02867 * 256.79660 * 16 15 13 18 18 C 1.38148 * 119.96793 * 179.81730 * 17 16 15 19 19 C 1.38458 * 120.02984 * 0.43705 * 18 17 16 20 20 F 1.35101 * 119.96700 * 179.77139 * 19 18 17 21 21 C 1.38459 * 120.05907 * 359.79249 * 19 18 17 22 22 C 1.38147 * 120.02971 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.46958 * 299.99908 * 1 2 3 24 24 H 1.08996 * 109.47497 * 59.99738 * 1 2 3 25 25 H 1.08998 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46932 * 240.00560 * 2 1 3 27 27 H 1.08996 * 109.47497 * 120.00262 * 2 1 3 28 28 H 1.09008 * 109.47144 * 29.99868 * 4 3 2 29 29 H 1.09000 * 109.47716 * 149.99984 * 4 3 2 30 30 H 0.96997 * 119.99683 * 180.02562 * 8 7 5 31 31 H 1.07995 * 120.01276 * 0.02562 * 17 16 15 32 32 H 1.07999 * 119.97703 * 180.20796 * 18 17 16 33 33 H 1.07996 * 119.98366 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.01474 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1259 -3.6181 9 14 5.9134 2.0968 -3.4169 10 1 6.1416 0.6401 -3.5938 11 1 6.1609 2.7968 -4.7030 12 1 6.8406 2.6210 -2.3822 13 6 2.2430 2.0165 1.1673 14 8 2.6485 3.1621 1.1672 15 8 2.0190 1.3815 2.3335 16 6 2.3623 2.0416 3.4716 17 6 3.5206 1.6960 4.1520 18 6 3.8701 2.3700 5.3061 19 6 3.0602 3.3840 5.7887 20 9 3.4008 4.0392 6.9200 21 6 1.9012 3.7267 5.1131 22 6 1.5513 3.0569 3.9567 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.5816 1.6878 -2.0283 29 1 2.0955 3.1411 -1.1384 30 1 3.6748 3.5158 -4.4443 31 1 4.1506 0.9027 3.7778 32 1 4.7737 2.1033 5.8341 33 1 1.2701 4.5175 5.4908 34 1 0.6470 3.3241 3.4301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195022009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:34 Heat of formation + Delta-G solvation = -107.464488 kcal Electronic energy + Delta-G solvation = -19939.416237 eV Core-core repulsion = 16558.759148 eV Total energy + Delta-G solvation = -3380.657089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.98374 -42.26674 -39.87019 -38.00613 -36.98581 -34.87651 -32.32940 -31.70685 -30.90165 -29.07472 -25.64876 -24.56448 -24.28649 -23.49287 -21.52774 -19.21944 -18.93086 -18.63670 -18.48248 -18.03092 -16.93437 -16.66253 -16.52470 -16.09452 -15.50556 -15.16332 -14.84043 -14.67791 -14.61584 -14.27744 -14.06647 -13.70264 -13.34700 -13.20430 -13.09772 -12.75616 -12.68998 -12.52837 -12.19195 -12.03451 -11.82746 -11.73629 -11.48540 -10.64287 -10.25587 -9.73006 -9.62597 -8.24082 -6.38469 -0.26648 0.09648 1.27251 1.39519 1.42871 1.50702 1.76821 2.37580 2.45743 3.05416 3.11094 3.13055 3.64589 3.75378 4.05349 4.14429 4.22720 4.33315 4.40588 4.60822 4.78461 4.90530 4.93815 4.95959 4.97008 5.01011 5.14845 5.19663 5.34744 5.37697 5.50733 5.73428 5.84006 6.00529 6.50336 6.68481 7.25676 7.41381 8.83367 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.005000 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.053824 B = 5598.121575 C = 6347.650920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.103 3.897 3 N -0.575 5.575 4 C 0.276 3.724 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.636 3.364 14 O -0.599 6.599 15 O -0.300 6.300 16 C 0.067 3.933 17 C -0.095 4.095 18 C -0.134 4.134 19 C 0.092 3.908 20 F -0.137 7.137 21 C -0.137 4.137 22 C -0.098 4.098 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.006 0.994 30 H 0.269 0.731 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 -6.097 15.829 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.018 4.018 3 N -0.313 5.313 4 C 0.156 3.844 5 C -0.588 4.588 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.391 3.609 14 O -0.489 6.489 15 O -0.212 6.212 16 C 0.025 3.975 17 C -0.113 4.113 18 C -0.152 4.152 19 C 0.073 3.927 20 F -0.115 7.115 21 C -0.155 4.155 22 C -0.117 4.117 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.171 0.829 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.405 -5.630 15.717 17.039 hybrid contribution 0.753 0.421 -0.474 0.985 sum -2.652 -5.208 15.243 16.325 Atomic orbital electron populations 1.22109 0.94343 1.03632 1.01527 1.21765 0.95579 0.80479 1.04018 1.47311 1.65630 1.15563 1.02805 1.18914 0.95984 0.91623 0.77848 1.21653 0.97680 1.32600 1.06829 0.92734 1.25793 1.02326 0.94277 0.96228 1.70028 1.37803 1.33833 1.14772 0.85478 0.78966 0.79086 0.77357 1.18400 1.20280 1.20451 1.18516 0.77738 0.83233 0.81435 1.90961 1.52307 1.18963 1.86650 1.84319 1.78327 1.46421 1.12152 1.18770 0.96244 0.96575 0.85951 1.21277 0.93833 1.00692 0.95494 1.21251 1.01418 0.95575 0.96956 1.17848 0.95838 0.94241 0.84771 1.91507 1.92145 1.79806 1.48067 1.21204 0.97086 1.01874 0.95374 1.21329 1.00288 0.93787 0.96268 0.93033 0.93452 0.88482 0.89674 0.89098 0.94235 0.97631 0.92227 0.82862 0.81066 0.81677 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.10 3.34 6.13 86.38 0.53 3.87 16 3 N -0.58 -25.04 2.46 -956.48 -2.35 -27.39 16 4 C 0.28 14.58 5.16 85.63 0.44 15.02 16 5 C -0.55 -31.04 9.39 25.60 0.24 -30.80 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.76 5.46 84.65 0.46 1.22 16 8 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 9 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.64 28.22 8.27 129.79 1.07 29.29 16 14 O -0.60 -31.50 15.46 19.76 0.31 -31.20 16 15 O -0.30 -10.72 8.85 0.00 0.00 -10.72 16 16 C 0.07 2.13 5.14 22.49 0.12 2.24 16 17 C -0.09 -2.49 9.99 22.36 0.22 -2.26 16 18 C -0.13 -2.94 10.02 22.30 0.22 -2.72 16 19 C 0.09 2.15 7.30 22.37 0.16 2.31 16 20 F -0.14 -3.09 17.27 44.97 0.78 -2.31 16 21 C -0.14 -3.22 10.02 22.30 0.22 -2.99 16 22 C -0.10 -2.79 9.57 22.36 0.21 -2.57 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 27 H 0.09 2.57 7.37 -2.39 -0.02 2.56 16 28 H 0.04 2.08 8.07 -2.38 -0.02 2.06 16 29 H 0.01 0.34 7.42 -2.39 -0.02 0.32 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -69.20 308.58 6.79 -62.41 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.10 Total: 8.36 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 4.65 Total: 9.16 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.06 Total: -81.72 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: 0.31 Total: -41.92 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.20 6.79 -62.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195022009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.057 kcal (2) G-P(sol) polarization free energy of solvation -69.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds