Wall clock time and date at job start Mon Mar 30 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34708 * 117.00043 * 2 1 4 4 O 1.21471 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.47734 * 120.00374 * 180.02562 * 3 2 1 6 6 C 1.39623 * 120.13591 * 359.97438 * 5 3 2 7 7 C 1.38153 * 119.82448 * 179.97438 * 6 5 3 8 8 F 1.35094 * 119.95337 * 179.97438 * 7 6 5 9 9 C 1.38600 * 120.09354 * 0.02562 * 7 6 5 10 10 C 1.38312 * 120.28190 * 0.02562 * 9 7 6 11 11 C 1.50703 * 119.91236 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46895 * 90.00146 * 11 10 9 13 13 C 1.46507 * 119.99665 * 90.00146 * 12 11 10 14 14 C 1.36930 * 120.00096 * 269.99749 * 12 11 10 15 15 H 1.08002 * 119.99929 * 23.04846 * 14 12 11 16 16 C 1.38811 * 120.00044 * 203.04571 * 14 12 11 17 17 N 1.31618 * 120.00107 * 13.05363 * 16 14 12 18 18 Si 1.86799 * 120.00084 * 193.05131 * 16 14 12 19 19 H 1.48504 * 109.46986 * 89.99932 * 18 16 14 20 20 H 1.48499 * 109.47228 * 210.00063 * 18 16 14 21 21 H 1.48504 * 109.47227 * 330.00242 * 18 16 14 22 22 C 1.37975 * 120.17382 * 359.97438 * 10 9 7 23 23 H 1.08997 * 109.47155 * 60.00451 * 1 2 3 24 24 H 1.09004 * 109.46899 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47303 * 300.00290 * 1 2 3 26 26 H 1.08001 * 120.09029 * 0.25531 * 6 5 3 27 27 H 1.07999 * 119.85954 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.46747 * 210.00401 * 11 10 9 29 29 H 1.08998 * 109.47048 * 330.00267 * 11 10 9 30 30 H 1.09002 * 109.46880 * 95.12629 * 13 12 11 31 31 H 1.09001 * 109.46516 * 215.12444 * 13 12 11 32 32 H 1.09000 * 109.47050 * 335.12537 * 13 12 11 33 33 H 0.97003 * 120.00107 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.04822 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3022 0.1085 -0.0006 7 6 5.6814 0.1884 -0.0016 8 9 6.4225 -0.9411 -0.0011 9 6 6.3058 1.4258 -0.0022 10 6 5.5538 2.5865 -0.0011 11 6 6.2414 3.9275 -0.0023 12 7 6.4620 4.3619 -1.3839 13 6 5.4433 5.1581 -2.0729 14 6 7.6204 4.0239 -2.0312 15 1 8.1901 3.1660 -1.7059 16 6 8.0623 4.7838 -3.1055 17 7 7.5250 5.9614 -3.3439 18 14 9.4195 4.1351 -4.2129 19 1 8.8200 3.3591 -5.3282 20 1 10.1959 5.2747 -4.7640 21 1 10.3218 3.2555 -3.4270 22 6 4.1756 2.5200 0.0000 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.8157 -0.8557 -0.0043 27 1 7.3843 1.4838 -0.0034 28 1 5.6160 4.6569 0.5125 29 1 7.1999 3.8448 0.5100 30 1 5.6845 6.2169 -1.9785 31 1 5.4196 4.8835 -3.1275 32 1 4.4681 4.9662 -1.6254 33 1 7.8340 6.4926 -4.0944 34 1 3.5903 3.4277 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236781990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:27 Heat of formation + Delta-G solvation = -80.775117 kcal Electronic energy + Delta-G solvation = -19881.241065 eV Core-core repulsion = 16501.741314 eV Total energy + Delta-G solvation = -3379.499751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.72016 -40.54489 -38.71312 -36.45991 -35.52875 -32.34306 -30.93681 -30.08113 -27.93507 -26.27682 -25.73538 -24.13084 -22.15603 -21.24335 -20.32376 -17.85905 -17.29826 -16.70618 -16.42832 -16.04200 -15.88101 -15.68628 -15.42640 -14.93342 -13.90848 -13.64820 -13.51070 -13.38135 -13.35315 -12.90498 -12.27943 -11.93988 -11.92128 -11.67221 -11.33874 -11.09181 -10.92251 -10.89684 -10.72882 -10.49465 -10.40053 -10.01672 -9.97078 -8.85360 -8.63256 -8.48528 -6.85191 -5.78136 -3.26718 0.72877 1.36950 2.54819 2.58894 3.35999 3.42738 3.43371 3.79203 4.28090 4.47456 4.72888 4.91601 4.96050 5.02922 5.19783 5.22878 5.35150 5.43125 5.49400 5.62783 5.73493 6.04815 6.11742 6.18019 6.27801 6.37136 6.52173 6.72956 6.84196 7.00111 7.33165 7.68018 7.68141 7.75746 8.31927 9.15829 9.77908 10.25935 11.26210 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.005283 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.970024 B = 5298.549959 C = 6019.783472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.502 6.502 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.082 3.918 8 F -0.141 7.141 9 C -0.099 4.099 10 C -0.063 4.063 11 C 0.180 3.820 12 N -0.591 5.591 13 C 0.159 3.841 14 C -0.262 4.262 15 H 0.069 0.931 16 C 0.007 3.993 17 N -0.904 5.904 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.055 4.055 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.000 1.000 33 H 0.254 0.746 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 -11.014 8.044 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.391 6.391 5 C -0.109 4.109 6 C -0.134 4.134 7 C 0.063 3.937 8 F -0.120 7.120 9 C -0.119 4.119 10 C -0.067 4.067 11 C 0.052 3.948 12 N -0.312 5.312 13 C 0.015 3.985 14 C -0.391 4.391 15 H 0.087 0.913 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.074 4.074 23 H 0.082 0.918 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.160 0.840 27 H 0.158 0.842 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.019 0.981 33 H 0.064 0.936 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.836 -10.579 7.875 16.452 hybrid contribution 0.588 -0.594 -0.882 1.215 sum -9.248 -11.173 6.993 16.101 Atomic orbital electron populations 1.23270 0.76110 1.03634 1.02690 1.86550 1.23468 1.32816 1.84475 1.21180 0.89026 0.81358 0.72593 1.90840 1.66639 1.35953 1.45656 1.18782 0.88537 0.94388 1.09206 1.21171 0.91990 0.99124 1.01153 1.17549 0.88854 0.82432 1.04879 1.91489 1.76765 1.49496 1.94203 1.21407 1.01714 0.90303 0.98452 1.21218 0.92795 0.98506 0.94170 1.19837 0.97983 0.88602 0.88352 1.43909 1.17909 1.61081 1.08323 1.20871 0.86532 0.95424 0.95701 1.19165 1.00101 1.07846 1.11996 0.91322 1.25009 0.98590 0.95214 1.00392 1.70070 1.44375 1.10062 1.30283 0.86260 0.81485 0.77859 0.80965 1.21432 1.21651 1.20360 1.21252 0.94403 0.96339 0.95391 0.91759 0.88068 0.91832 0.83987 0.84157 0.92665 0.91670 0.94628 0.94026 0.98100 0.93615 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.45 9.82 -40.51 -0.40 -4.85 16 3 C 0.51 7.68 7.90 34.61 0.27 7.95 16 4 O -0.50 -8.56 16.14 -19.24 -0.31 -8.87 16 5 C -0.11 -1.65 5.87 -104.99 -0.62 -2.27 16 6 C -0.11 -1.64 9.60 -39.10 -0.38 -2.01 16 7 C 0.08 1.26 7.29 -39.48 -0.29 0.97 16 8 F -0.14 -2.14 17.26 2.25 0.04 -2.10 16 9 C -0.10 -1.63 9.67 -39.42 -0.38 -2.01 16 10 C -0.06 -1.09 5.46 -104.69 -0.57 -1.66 16 11 C 0.18 3.46 5.76 -5.19 -0.03 3.43 16 12 N -0.59 -14.30 2.90 -182.49 -0.53 -14.83 16 13 C 0.16 3.86 8.98 59.85 0.54 4.39 16 14 C -0.26 -6.94 9.65 -15.06 -0.15 -7.09 16 15 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 16 C 0.01 0.19 5.10 -17.43 -0.09 0.10 16 17 N -0.90 -25.93 10.72 55.49 0.59 -25.33 16 18 Si 0.90 21.58 29.57 -169.99 -5.03 16.55 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.05 -0.90 9.24 -39.17 -0.36 -1.27 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.14 1.72 7.61 -52.49 -0.40 1.33 16 27 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 28 H 0.06 0.97 8.01 -51.93 -0.42 0.56 16 29 H 0.06 1.21 7.98 -51.93 -0.41 0.79 16 30 H 0.04 0.93 7.34 -51.93 -0.38 0.54 16 31 H 0.04 1.09 7.35 -51.93 -0.38 0.71 16 32 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 33 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.14 2.29 7.65 -52.48 -0.40 1.89 16 LS Contribution 305.43 15.07 4.60 4.60 Total: -1.00 -30.24 305.43 -6.06 -36.30 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.05 Total: -3.41 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.98 Total: 1.94 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.06 Total: -40.17 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.71 Total: -13.72 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.24 -6.06 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236781990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.478 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds