Wall clock time and date at job start Mon Mar 30 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34708 * 117.00043 * 2 1 4 4 O 1.21471 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.47734 * 120.00374 * 180.02562 * 3 2 1 6 6 C 1.39623 * 120.13591 * 359.97438 * 5 3 2 7 7 C 1.38153 * 119.82448 * 179.97438 * 6 5 3 8 8 F 1.35094 * 119.95337 * 179.97438 * 7 6 5 9 9 C 1.38600 * 120.09354 * 0.02562 * 7 6 5 10 10 C 1.38312 * 120.28190 * 0.02562 * 9 7 6 11 11 C 1.50703 * 119.91236 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46895 * 90.00146 * 11 10 9 13 13 C 1.46507 * 119.99665 * 90.00146 * 12 11 10 14 14 C 1.36930 * 120.00096 * 269.99749 * 12 11 10 15 15 H 1.08002 * 119.99929 * 23.04846 * 14 12 11 16 16 C 1.38811 * 120.00044 * 203.04571 * 14 12 11 17 17 N 1.31618 * 120.00107 * 13.05363 * 16 14 12 18 18 Si 1.86799 * 120.00084 * 193.05131 * 16 14 12 19 19 H 1.48504 * 109.46986 * 89.99932 * 18 16 14 20 20 H 1.48499 * 109.47228 * 210.00063 * 18 16 14 21 21 H 1.48504 * 109.47227 * 330.00242 * 18 16 14 22 22 C 1.37975 * 120.17382 * 359.97438 * 10 9 7 23 23 H 1.08997 * 109.47155 * 60.00451 * 1 2 3 24 24 H 1.09004 * 109.46899 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47303 * 300.00290 * 1 2 3 26 26 H 1.08001 * 120.09029 * 0.25531 * 6 5 3 27 27 H 1.07999 * 119.85954 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.46747 * 210.00401 * 11 10 9 29 29 H 1.08998 * 109.47048 * 330.00267 * 11 10 9 30 30 H 1.09002 * 109.46880 * 95.12629 * 13 12 11 31 31 H 1.09001 * 109.46516 * 215.12444 * 13 12 11 32 32 H 1.09000 * 109.47050 * 335.12537 * 13 12 11 33 33 H 0.97003 * 120.00107 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.04822 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3022 0.1085 -0.0006 7 6 5.6814 0.1884 -0.0016 8 9 6.4225 -0.9411 -0.0011 9 6 6.3058 1.4258 -0.0022 10 6 5.5538 2.5865 -0.0011 11 6 6.2414 3.9275 -0.0023 12 7 6.4620 4.3619 -1.3839 13 6 5.4433 5.1581 -2.0729 14 6 7.6204 4.0239 -2.0312 15 1 8.1901 3.1660 -1.7059 16 6 8.0623 4.7838 -3.1055 17 7 7.5250 5.9614 -3.3439 18 14 9.4195 4.1351 -4.2129 19 1 8.8200 3.3591 -5.3282 20 1 10.1959 5.2747 -4.7640 21 1 10.3218 3.2555 -3.4270 22 6 4.1756 2.5200 0.0000 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.8157 -0.8557 -0.0043 27 1 7.3843 1.4838 -0.0034 28 1 5.6160 4.6569 0.5125 29 1 7.1999 3.8448 0.5100 30 1 5.6845 6.2169 -1.9785 31 1 5.4196 4.8835 -3.1275 32 1 4.4681 4.9662 -1.6254 33 1 7.8340 6.4926 -4.0944 34 1 3.5903 3.4277 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236781990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:27 Heat of formation + Delta-G solvation = -96.866181 kcal Electronic energy + Delta-G solvation = -19881.938826 eV Core-core repulsion = 16501.741314 eV Total energy + Delta-G solvation = -3380.197512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92952 -41.67386 -39.97808 -37.57894 -37.27417 -33.98959 -32.41547 -31.57163 -28.82095 -28.01678 -27.52005 -25.31200 -23.74883 -22.64004 -21.64295 -19.15661 -18.56319 -18.41075 -17.45791 -17.28356 -17.07976 -16.91464 -16.89997 -16.57484 -15.47569 -15.15315 -15.14459 -14.62567 -14.43933 -14.31913 -13.63257 -13.32538 -13.13514 -13.02416 -12.86241 -12.78118 -12.60354 -12.47643 -12.17484 -11.97094 -11.87758 -11.84540 -11.70093 -10.66283 -10.11084 -9.78469 -8.81929 -7.82343 -5.32575 -0.49713 0.11579 1.35005 1.47255 1.49151 1.56792 1.57856 2.45800 2.59970 3.07652 3.31292 3.57267 3.74119 3.83587 3.99328 4.04260 4.22404 4.30387 4.34841 4.41839 4.66362 4.72090 4.81865 4.85827 4.96294 4.99593 5.10353 5.19307 5.33492 5.49445 5.64853 5.70996 5.73939 6.31739 6.57817 7.13977 7.83817 8.28134 9.20725 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.005283 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.970024 B = 5298.549959 C = 6019.783472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.518 3.482 4 O -0.529 6.529 5 C -0.111 4.111 6 C -0.096 4.096 7 C 0.081 3.919 8 F -0.138 7.138 9 C -0.103 4.103 10 C -0.073 4.073 11 C 0.180 3.820 12 N -0.609 5.609 13 C 0.175 3.825 14 C -0.260 4.260 15 H 0.076 0.924 16 C -0.050 4.050 17 N -0.938 5.938 18 Si 0.963 3.037 19 H -0.291 1.291 20 H -0.296 1.296 21 H -0.265 1.265 22 C -0.059 4.059 23 H 0.062 0.938 24 H 0.138 0.862 25 H 0.066 0.934 26 H 0.169 0.831 27 H 0.142 0.858 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.029 0.971 33 H 0.248 0.752 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -13.318 8.766 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.364 3.636 4 O -0.420 6.420 5 C -0.113 4.113 6 C -0.115 4.115 7 C 0.062 3.938 8 F -0.117 7.117 9 C -0.123 4.123 10 C -0.076 4.076 11 C 0.054 3.946 12 N -0.331 5.331 13 C 0.030 3.970 14 C -0.390 4.390 15 H 0.094 0.906 16 C -0.245 4.245 17 N -0.584 5.584 18 Si 0.792 3.208 19 H -0.218 1.218 20 H -0.222 1.222 21 H -0.189 1.189 22 C -0.078 4.078 23 H 0.080 0.920 24 H 0.156 0.844 25 H 0.085 0.915 26 H 0.186 0.814 27 H 0.160 0.840 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.449 -12.937 8.641 18.741 hybrid contribution 0.660 0.003 -0.996 1.195 sum -9.789 -12.934 7.645 17.932 Atomic orbital electron populations 1.23646 0.73907 1.06120 1.02799 1.86531 1.25541 1.31166 1.83736 1.21075 0.88793 0.81740 0.72020 1.90832 1.67115 1.36986 1.47020 1.18838 0.89189 0.94238 1.09014 1.21396 0.91434 0.99876 0.98770 1.17518 0.89254 0.82095 1.04947 1.91500 1.76794 1.49194 1.94179 1.21457 1.01894 0.90614 0.98314 1.20800 0.93064 0.97545 0.96167 1.19945 0.98839 0.89895 0.85946 1.44102 1.17363 1.61442 1.10160 1.20570 0.88017 0.94031 0.94360 1.19518 1.00415 1.07397 1.11695 0.90622 1.25741 1.01071 0.95602 1.02108 1.70226 1.46105 1.11305 1.30778 0.85320 0.79235 0.77087 0.79157 1.21777 1.22245 1.18914 1.21230 0.94081 0.96981 0.95505 0.91963 0.84414 0.91508 0.81351 0.84001 0.91277 0.91183 0.97122 0.96993 0.95276 0.94322 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.82 9.82 -56.17 -0.55 -8.37 16 3 C 0.52 14.47 7.90 70.33 0.56 15.02 16 4 O -0.53 -17.37 16.14 19.93 0.32 -17.04 16 5 C -0.11 -3.18 5.87 -20.10 -0.12 -3.30 16 6 C -0.10 -2.45 9.60 22.58 0.22 -2.23 16 7 C 0.08 2.29 7.29 22.34 0.16 2.45 16 8 F -0.14 -3.83 17.26 44.97 0.78 -3.05 16 9 C -0.10 -3.22 9.67 22.37 0.22 -3.00 16 10 C -0.07 -2.42 5.46 -19.91 -0.11 -2.53 16 11 C 0.18 6.77 5.76 85.63 0.49 7.27 16 12 N -0.61 -29.41 2.90 -731.28 -2.12 -31.54 16 13 C 0.18 8.62 8.98 127.77 1.15 9.76 16 14 C -0.26 -13.75 9.65 84.03 0.81 -12.94 16 15 H 0.08 3.81 7.86 -2.91 -0.02 3.79 16 16 C -0.05 -2.76 5.10 84.86 0.43 -2.33 16 17 N -0.94 -55.07 10.72 21.65 0.23 -54.84 16 18 Si 0.96 44.57 29.57 68.60 2.03 46.60 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 C -0.06 -1.87 9.24 22.54 0.21 -1.66 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.17 3.40 7.61 -2.91 -0.02 3.38 16 27 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 28 H 0.07 2.38 8.01 -2.39 -0.02 2.36 16 29 H 0.07 2.54 7.98 -2.39 -0.02 2.52 16 30 H 0.01 0.56 7.34 -2.39 -0.02 0.55 16 31 H 0.01 0.62 7.35 -2.39 -0.02 0.60 16 32 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 33 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.14 4.35 7.65 -2.91 -0.02 4.33 16 Total: -1.00 -64.40 305.43 7.01 -57.39 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.11 Total: 2.71 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.22 Total: 8.13 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.89 Total: -86.37 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.23 Total: -25.41 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.40 7.01 -57.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236781990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.474 kcal (2) G-P(sol) polarization free energy of solvation -64.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds