Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00711 * 2 1 4 4 C 1.50696 * 109.46913 * 66.04583 * 3 2 1 5 5 H 1.08008 * 120.00383 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00398 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99577 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00451 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47187 * 59.99857 * 8 6 4 10 10 H 1.48500 * 109.47302 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47041 * 300.00026 * 8 6 4 12 12 C 1.46908 * 110.99873 * 236.04629 * 2 1 3 13 13 C 1.50698 * 109.46762 * 288.81385 * 12 2 1 14 14 C 1.37976 * 120.04837 * 106.45598 * 13 12 2 15 15 C 1.38308 * 120.17820 * 179.74447 * 14 13 12 16 16 C 1.38607 * 120.27964 * 0.54971 * 15 14 13 17 17 F 1.35094 * 119.95467 * 179.72483 * 16 15 14 18 18 C 1.38157 * 120.09206 * 359.70102 * 16 15 14 19 19 C 1.39608 * 120.05348 * 286.72250 * 13 12 2 20 20 C 1.47738 * 120.13384 * 0.02562 * 19 13 12 21 21 O 1.21473 * 119.99883 * 354.61689 * 20 19 13 22 22 O 1.34712 * 119.99477 * 174.61759 * 20 19 13 23 23 H 1.09002 * 109.47789 * 188.87107 * 1 2 3 24 24 H 1.09006 * 109.47119 * 308.86937 * 1 2 3 25 25 H 1.08996 * 109.47490 * 68.86293 * 1 2 3 26 26 H 1.08997 * 109.47495 * 186.05174 * 3 2 1 27 27 H 1.09002 * 109.46766 * 306.05304 * 3 2 1 28 28 H 0.96994 * 119.99913 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46916 * 48.81373 * 12 2 1 30 30 H 1.09000 * 109.47456 * 168.81203 * 12 2 1 31 31 H 1.08004 * 119.90965 * 0.02562 * 14 13 12 32 32 H 1.08002 * 119.86286 * 180.25588 * 15 14 13 33 33 H 1.07998 * 120.08749 * 180.02562 * 18 16 15 34 34 H 0.96700 * 116.99351 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0270 3.3494 1.5286 7 7 2.7114 4.0021 0.6147 8 14 1.5833 4.1867 3.1383 9 1 2.1760 3.4295 4.2700 10 1 2.1155 5.5731 3.1384 11 1 0.1061 4.2230 3.2867 12 6 1.9953 -0.7660 -1.1377 13 6 1.7475 -2.2352 -0.9116 14 6 0.7700 -2.8899 -1.6324 15 6 0.5439 -4.2394 -1.4309 16 6 1.2891 -4.9410 -0.4962 17 9 1.0589 -6.2577 -0.3008 18 6 2.2673 -4.2956 0.2355 19 6 2.5029 -2.9347 0.0313 20 6 3.5466 -2.2374 0.8106 21 8 3.8164 -1.0790 0.5642 22 8 4.1989 -2.8865 1.7944 23 1 -0.3635 -1.0153 0.1585 24 1 -0.3634 0.6449 0.8002 25 1 -0.3634 0.3706 -0.9585 26 1 3.0797 1.3443 -0.1083 27 1 1.5611 1.9273 -0.8309 28 1 2.9860 4.9181 0.7767 29 1 1.4938 -0.4494 -2.0521 30 1 3.0667 -0.5883 -1.2308 31 1 0.1829 -2.3480 -2.3592 32 1 -0.2198 -4.7477 -2.0009 33 1 2.8482 -4.8424 0.9634 34 1 4.8737 -2.3889 2.2763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238238505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = -96.145198 kcal Electronic energy + Delta-G solvation = -20286.677524 eV Core-core repulsion = 16906.511277 eV Total energy + Delta-G solvation = -3380.166248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.96789 -40.31485 -38.51396 -36.38650 -35.53900 -32.61964 -31.56373 -31.01616 -27.16094 -26.57637 -24.79133 -23.58467 -22.19050 -20.97980 -20.07536 -18.12922 -17.40034 -16.40329 -16.37948 -15.79620 -15.68486 -15.29784 -15.17266 -14.75255 -14.19935 -13.93162 -13.88627 -13.31174 -13.10377 -12.76812 -12.23340 -11.89094 -11.71259 -11.46843 -11.37949 -11.12861 -11.04281 -10.84837 -10.63333 -10.37832 -9.94915 -9.62255 -9.22285 -9.17125 -8.62672 -8.35962 -7.17272 -5.95667 -3.95729 0.64715 1.08928 2.75783 3.21082 3.36319 3.40157 3.43236 3.68170 4.12814 4.47603 4.60550 4.75787 4.88084 5.06230 5.31191 5.40664 5.41407 5.65921 5.83546 5.87381 5.94196 6.05878 6.15882 6.29406 6.32246 6.52902 6.70166 6.77778 6.88314 7.40627 7.44502 7.85665 8.18281 8.27307 8.32561 8.62679 9.10743 9.66967 11.15367 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.005165 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.251349 B = 5419.774419 C = 5828.291155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.522 5.522 3 C 0.200 3.800 4 C -0.501 4.501 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.082 3.918 13 C -0.011 4.011 14 C -0.101 4.101 15 C -0.122 4.122 16 C 0.074 3.926 17 F -0.141 7.141 18 C -0.103 4.103 19 C -0.073 4.073 20 C 0.512 3.488 21 O -0.451 6.451 22 O -0.525 6.525 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.010 0.990 26 H 0.039 0.961 27 H -0.014 1.014 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.101 0.899 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.413 -16.836 -3.572 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.246 5.246 3 C 0.075 3.925 4 C -0.540 4.540 5 H 0.078 0.922 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.045 4.045 13 C -0.012 4.012 14 C -0.119 4.119 15 C -0.141 4.141 16 C 0.055 3.945 17 F -0.119 7.119 18 C -0.122 4.122 19 C -0.075 4.075 20 C 0.353 3.647 21 O -0.335 6.335 22 O -0.338 6.338 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.004 0.996 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.392 -16.776 -3.455 17.185 hybrid contribution -0.174 0.958 0.520 1.104 sum -1.566 -15.819 -2.935 16.165 Atomic orbital electron populations 1.22315 0.89423 0.99777 1.00150 1.62044 1.06020 1.18034 1.38542 1.19687 0.95928 0.80728 0.96124 1.21103 1.34468 0.96713 1.01734 0.92227 1.24959 0.95455 0.97357 0.96824 1.69951 1.38553 1.11398 1.34035 0.86595 0.78587 0.78343 0.84036 1.20305 1.21399 1.20387 1.21258 1.02692 0.87544 0.93043 1.20291 0.92016 0.97077 0.91851 1.20931 0.97468 0.93318 1.00221 1.21320 0.99901 0.94992 0.97893 1.17484 0.98993 0.78422 0.99638 1.91496 1.93961 1.32058 1.94425 1.21383 0.97193 0.94240 0.99337 1.18684 0.97786 0.92460 0.98521 1.20559 0.80795 0.84664 0.78688 1.91052 1.62160 1.15750 1.64514 1.84478 1.52763 1.49064 1.47511 0.93993 0.90577 0.97171 0.94342 0.99591 0.93002 0.95107 0.88072 0.84286 0.84406 0.83516 0.72839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.24 60.06 0.55 1.19 16 2 N -0.52 -11.45 3.68 -245.83 -0.90 -12.35 16 3 C 0.20 5.34 4.47 -4.98 -0.02 5.32 16 4 C -0.50 -14.39 8.39 -34.44 -0.29 -14.68 16 5 H 0.06 1.70 7.17 -52.48 -0.38 1.32 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.08 1.51 4.12 -4.97 -0.02 1.49 16 13 C -0.01 -0.17 4.66 -104.21 -0.49 -0.65 16 14 C -0.10 -1.22 9.44 -39.65 -0.37 -1.59 16 15 C -0.12 -1.32 10.02 -39.42 -0.39 -1.72 16 16 C 0.07 0.89 7.29 -39.47 -0.29 0.60 16 17 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 18 C -0.10 -1.30 9.59 -39.10 -0.38 -1.68 16 19 C -0.07 -1.09 5.87 -104.99 -0.62 -1.71 16 20 C 0.51 8.39 8.20 34.61 0.28 8.67 16 21 O -0.45 -9.15 12.85 -19.25 -0.25 -9.40 16 22 O -0.52 -6.74 12.69 -40.52 -0.51 -7.26 16 23 H 0.04 0.72 7.43 -51.93 -0.39 0.33 16 24 H 0.08 1.63 6.66 -51.93 -0.35 1.29 16 25 H 0.01 0.19 8.02 -51.93 -0.42 -0.23 16 26 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 27 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.03 0.53 7.77 -51.93 -0.40 0.12 16 30 H 0.10 2.00 5.96 -51.93 -0.31 1.69 16 31 H 0.14 1.41 7.99 -52.48 -0.42 1.00 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.15 1.65 7.62 -52.49 -0.40 1.25 16 34 H 0.41 3.76 9.11 45.56 0.42 4.18 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -32.90 297.12 -6.57 -39.47 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.01 Total: -0.55 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.12 Total: -3.28 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.17 Total: -38.85 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.76 Total: -16.65 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.90 -6.57 -39.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238238505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.671 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds