Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00711 * 2 1 4 4 C 1.50696 * 109.46913 * 66.04583 * 3 2 1 5 5 H 1.08008 * 120.00383 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00398 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99577 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00451 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47187 * 59.99857 * 8 6 4 10 10 H 1.48500 * 109.47302 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47041 * 300.00026 * 8 6 4 12 12 C 1.46908 * 110.99873 * 236.04629 * 2 1 3 13 13 C 1.50698 * 109.46762 * 288.81385 * 12 2 1 14 14 C 1.37976 * 120.04837 * 106.45598 * 13 12 2 15 15 C 1.38308 * 120.17820 * 179.74447 * 14 13 12 16 16 C 1.38607 * 120.27964 * 0.54971 * 15 14 13 17 17 F 1.35094 * 119.95467 * 179.72483 * 16 15 14 18 18 C 1.38157 * 120.09206 * 359.70102 * 16 15 14 19 19 C 1.39608 * 120.05348 * 286.72250 * 13 12 2 20 20 C 1.47738 * 120.13384 * 0.02562 * 19 13 12 21 21 O 1.21473 * 119.99883 * 354.61689 * 20 19 13 22 22 O 1.34712 * 119.99477 * 174.61759 * 20 19 13 23 23 H 1.09002 * 109.47789 * 188.87107 * 1 2 3 24 24 H 1.09006 * 109.47119 * 308.86937 * 1 2 3 25 25 H 1.08996 * 109.47490 * 68.86293 * 1 2 3 26 26 H 1.08997 * 109.47495 * 186.05174 * 3 2 1 27 27 H 1.09002 * 109.46766 * 306.05304 * 3 2 1 28 28 H 0.96994 * 119.99913 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46916 * 48.81373 * 12 2 1 30 30 H 1.09000 * 109.47456 * 168.81203 * 12 2 1 31 31 H 1.08004 * 119.90965 * 0.02562 * 14 13 12 32 32 H 1.08002 * 119.86286 * 180.25588 * 15 14 13 33 33 H 1.07998 * 120.08749 * 180.02562 * 18 16 15 34 34 H 0.96700 * 116.99351 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0270 3.3494 1.5286 7 7 2.7114 4.0021 0.6147 8 14 1.5833 4.1867 3.1383 9 1 2.1760 3.4295 4.2700 10 1 2.1155 5.5731 3.1384 11 1 0.1061 4.2230 3.2867 12 6 1.9953 -0.7660 -1.1377 13 6 1.7475 -2.2352 -0.9116 14 6 0.7700 -2.8899 -1.6324 15 6 0.5439 -4.2394 -1.4309 16 6 1.2891 -4.9410 -0.4962 17 9 1.0589 -6.2577 -0.3008 18 6 2.2673 -4.2956 0.2355 19 6 2.5029 -2.9347 0.0313 20 6 3.5466 -2.2374 0.8106 21 8 3.8164 -1.0790 0.5642 22 8 4.1989 -2.8865 1.7944 23 1 -0.3635 -1.0153 0.1585 24 1 -0.3634 0.6449 0.8002 25 1 -0.3634 0.3706 -0.9585 26 1 3.0797 1.3443 -0.1083 27 1 1.5611 1.9273 -0.8309 28 1 2.9860 4.9181 0.7767 29 1 1.4938 -0.4494 -2.0521 30 1 3.0667 -0.5883 -1.2308 31 1 0.1829 -2.3480 -2.3592 32 1 -0.2198 -4.7477 -2.0009 33 1 2.8482 -4.8424 0.9634 34 1 4.8737 -2.3889 2.2763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238238505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = -118.530854 kcal Electronic energy + Delta-G solvation = -20287.648239 eV Core-core repulsion = 16906.511277 eV Total energy + Delta-G solvation = -3381.136963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.90603 -41.51001 -39.66766 -37.95211 -36.85274 -34.70973 -32.57286 -32.34836 -29.15298 -28.01627 -26.14110 -25.14182 -23.38327 -22.47303 -21.51469 -19.21466 -18.55635 -18.49687 -17.44777 -17.01616 -16.72525 -16.63670 -16.43660 -16.34494 -15.77534 -15.67262 -15.03973 -14.52698 -14.38693 -14.10796 -13.81672 -13.42675 -13.25894 -12.93215 -12.78181 -12.64497 -12.50105 -12.43455 -12.33931 -12.24208 -11.86010 -11.29318 -11.05180 -10.58838 -10.20433 -9.69481 -8.92865 -8.17312 -6.26754 -0.40015 0.08459 1.39278 1.43152 1.50925 1.61739 2.12900 2.40623 2.58737 3.14694 3.15521 3.46309 3.67278 3.76816 3.92900 4.11997 4.39512 4.48116 4.56832 4.64252 4.76321 4.82235 4.91740 4.97343 5.07988 5.10683 5.21857 5.37267 5.47374 5.65515 5.74021 5.76919 6.10416 6.42611 6.68652 6.88986 7.13264 7.41738 8.93717 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.005165 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.251349 B = 5419.774419 C = 5828.291155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.220 3.780 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.088 3.912 13 C -0.028 4.028 14 C -0.093 4.093 15 C -0.103 4.103 16 C 0.077 3.923 17 F -0.138 7.138 18 C -0.097 4.097 19 C -0.092 4.092 20 C 0.513 3.487 21 O -0.503 6.503 22 O -0.513 6.513 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.019 0.981 26 H 0.001 0.999 27 H -0.042 1.042 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.159 0.841 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.171 -18.853 -3.209 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.094 3.906 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.197 4.197 7 N -0.577 5.577 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.040 4.040 13 C -0.030 4.030 14 C -0.111 4.111 15 C -0.121 4.121 16 C 0.057 3.943 17 F -0.116 7.116 18 C -0.116 4.116 19 C -0.094 4.094 20 C 0.356 3.644 21 O -0.391 6.391 22 O -0.327 6.327 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.019 0.981 27 H -0.024 1.024 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.192 0.808 33 H 0.176 0.824 34 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -3.152 -18.843 -3.080 19.352 hybrid contribution 0.396 1.428 0.372 1.528 sum -2.755 -17.416 -2.708 17.839 Atomic orbital electron populations 1.22277 0.87855 1.01158 0.99787 1.61889 1.07387 1.15191 1.40967 1.19230 0.93553 0.83291 0.94495 1.21402 1.34530 0.97310 1.02376 0.92384 1.25902 0.95118 0.98063 1.00642 1.70092 1.39523 1.11807 1.36240 0.85457 0.78885 0.77165 0.79193 1.19686 1.20733 1.19027 1.21124 1.01169 0.89547 0.92148 1.20076 0.94097 0.95115 0.93674 1.21127 0.96315 0.93946 0.99712 1.21647 0.99503 0.94179 0.96767 1.17579 0.98653 0.78526 0.99503 1.91515 1.93859 1.31846 1.94396 1.21428 0.97452 0.93181 0.99553 1.18690 0.98102 0.93479 0.99152 1.20972 0.80657 0.84128 0.78621 1.91053 1.63943 1.17970 1.66167 1.84444 1.52895 1.48709 1.46676 0.90902 0.92788 0.96270 0.98072 1.02426 0.92800 0.93978 0.90639 0.81989 0.80778 0.82351 0.71096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 9.24 127.69 1.18 2.64 16 2 N -0.53 -23.85 3.68 -931.67 -3.43 -27.27 16 3 C 0.22 12.39 4.47 85.56 0.38 12.77 16 4 C -0.52 -30.60 8.39 25.60 0.21 -30.39 16 5 H 0.06 3.37 7.17 -2.91 -0.02 3.35 16 6 C 0.00 0.02 5.46 84.66 0.46 0.48 16 7 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 8 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.09 3.27 4.12 85.55 0.35 3.63 16 13 C -0.03 -0.83 4.66 -19.60 -0.09 -0.92 16 14 C -0.09 -1.93 9.44 22.22 0.21 -1.72 16 15 C -0.10 -1.76 10.02 22.37 0.22 -1.53 16 16 C 0.08 1.56 7.29 22.34 0.16 1.73 16 17 F -0.14 -2.78 17.26 44.97 0.78 -2.01 16 18 C -0.10 -2.25 9.59 22.58 0.22 -2.04 16 19 C -0.09 -2.70 5.87 -20.10 -0.12 -2.81 16 20 C 0.51 17.11 8.20 70.33 0.58 17.69 16 21 O -0.50 -21.59 12.85 19.92 0.26 -21.33 16 22 O -0.51 -13.01 12.69 -56.22 -0.71 -13.72 16 23 H 0.07 2.36 7.43 -2.39 -0.02 2.34 16 24 H 0.05 2.31 6.66 -2.38 -0.02 2.30 16 25 H 0.02 0.69 8.02 -2.39 -0.02 0.67 16 26 H 0.00 0.07 7.51 -2.39 -0.02 0.05 16 27 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.04 1.44 7.77 -2.39 -0.02 1.42 16 30 H 0.08 3.20 5.96 -2.39 -0.01 3.19 16 31 H 0.16 2.63 7.99 -2.91 -0.02 2.60 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.16 3.21 7.62 -2.91 -0.02 3.19 16 34 H 0.43 7.77 9.11 -74.06 -0.67 7.09 16 Total: -1.00 -73.71 297.12 3.44 -70.26 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.46 Total: 4.93 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 3.77 Total: -0.49 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.14 Total: -85.31 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.46 Total: -35.05 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.71 3.44 -70.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238238505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.266 kcal (2) G-P(sol) polarization free energy of solvation -73.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds