Wall clock time and date at job start Mon Mar 30 2020 00:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21268 * 119.99956 * 2 1 4 4 C 1.47092 * 120.00118 * 179.97438 * 2 1 3 5 5 C 1.39957 * 120.04589 * 180.02562 * 4 2 1 6 6 C 1.37621 * 119.94799 * 179.97438 * 5 4 2 7 7 C 1.39548 * 120.04974 * 359.97438 * 6 5 4 8 8 C 1.48254 * 119.95243 * 179.97438 * 7 6 5 9 9 C 1.39905 * 119.60829 * 179.97438 * 8 7 6 10 10 C 1.38723 * 119.45901 * 179.97438 * 9 8 7 11 11 C 1.38263 * 118.68440 * 0.25791 * 10 9 8 12 12 C 1.40725 * 119.19024 * 359.52273 * 11 10 9 13 13 C 1.41401 * 119.76211 * 180.20571 * 12 11 10 14 14 H 1.07998 * 120.00119 * 0.27522 * 13 12 11 15 15 C 1.40026 * 119.99826 * 180.27307 * 13 12 11 16 16 N 1.30743 * 119.99719 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99963 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 59.99855 * 17 15 13 19 19 H 1.48502 * 109.46735 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46856 * 299.99694 * 17 15 13 21 21 N 1.32251 * 119.61047 * 0.02562 * 8 7 6 22 22 C 1.39552 * 120.09534 * 0.27589 * 7 6 5 23 23 C 1.37621 * 120.04931 * 359.44666 * 22 7 6 24 24 H 1.09003 * 109.46944 * 269.99745 * 1 2 3 25 25 H 1.09000 * 109.46811 * 30.00097 * 1 2 3 26 26 H 1.08995 * 109.46888 * 149.99997 * 1 2 3 27 27 H 1.07997 * 120.02772 * 359.95336 * 5 4 2 28 28 H 1.07993 * 119.97366 * 180.02562 * 6 5 4 29 29 H 1.07999 * 120.27078 * 0.02562 * 9 8 7 30 30 H 1.08002 * 120.65332 * 179.97438 * 10 9 8 31 31 H 1.08005 * 120.40196 * 179.71774 * 11 10 9 32 32 H 0.97004 * 119.99778 * 180.02562 * 16 15 13 33 33 H 1.08008 * 119.97569 * 179.70497 * 22 7 6 34 34 H 1.08002 * 120.02750 * 180.27806 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2425 -1.2738 0.0006 5 6 3.6421 -1.2749 0.0011 6 6 4.3282 -2.4679 0.0022 7 6 3.6295 -3.6759 0.0033 8 6 4.3707 -4.9598 0.0038 9 6 3.6630 -6.1666 0.0055 10 6 4.3597 -7.3662 0.0054 11 6 5.7419 -7.3308 0.0093 12 6 6.3966 -6.0851 0.0028 13 6 7.8097 -6.0349 0.0022 14 1 8.3826 -6.9504 0.0022 15 6 8.4663 -4.7981 0.0016 16 7 7.7727 -3.6898 0.0010 17 14 10.3331 -4.7317 0.0001 18 1 10.8517 -5.4138 -1.2127 19 1 10.7779 -3.3149 0.0002 20 1 10.8535 -5.4135 1.2123 21 7 5.6932 -4.9508 0.0038 22 6 2.2339 -3.6771 -0.0026 23 6 1.5438 -2.4864 0.0021 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.1833 -0.3403 0.0004 28 1 5.4081 -2.4693 0.0030 29 1 2.5830 -6.1643 0.0059 30 1 3.8329 -8.3090 0.0071 31 1 6.3121 -8.2481 0.0140 32 1 8.2275 -2.8330 0.0002 33 1 1.6951 -4.6131 -0.0065 34 1 0.4638 -2.4878 0.0022 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239627973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:33 Heat of formation + Delta-G solvation = 15.133301 kcal Electronic energy + Delta-G solvation = -18716.907273 eV Core-core repulsion = 15772.335648 eV Total energy + Delta-G solvation = -2944.571625 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.73308 -38.58781 -37.35260 -33.80497 -32.28738 -31.03769 -30.66415 -29.81104 -28.42036 -25.82447 -23.80927 -22.40133 -21.09130 -20.74361 -19.41886 -17.62362 -16.83674 -15.79842 -15.30404 -14.91925 -14.87369 -14.80871 -14.23961 -13.76031 -13.44678 -13.18586 -13.08746 -12.85710 -12.38030 -12.25526 -12.13205 -11.78411 -11.34714 -11.23395 -11.11735 -10.88279 -10.65044 -10.45089 -10.03382 -9.58743 -9.54235 -8.94299 -8.57851 -8.18023 -7.74687 -7.37258 -6.52725 -4.63042 0.81078 1.84060 2.33395 2.79501 3.04466 3.05048 3.05909 3.17850 3.87966 4.20973 4.24450 4.73509 5.01618 5.03997 5.24495 5.27516 5.34374 5.55836 5.74026 5.80851 5.86397 5.92748 6.04620 6.19484 6.32980 6.44235 6.57407 6.63098 6.71054 6.81641 7.05345 7.14717 7.21460 7.40440 7.46752 7.59845 7.65616 7.89692 8.10925 8.54905 8.79437 9.91250 10.20233 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.005217 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.077246 B = 5365.967245 C = 6671.897441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.470 6.470 4 C -0.192 4.192 5 C -0.069 4.069 6 C -0.097 4.097 7 C 0.021 3.979 8 C 0.163 3.837 9 C -0.296 4.296 10 C -0.061 4.061 11 C -0.266 4.266 12 C 0.255 3.745 13 C -0.430 4.430 14 H 0.085 0.915 15 C 0.071 3.929 16 N -0.719 5.719 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 N -0.464 5.464 22 C -0.129 4.129 23 C -0.083 4.083 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.160 0.840 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.275 0.725 33 H 0.129 0.871 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 2.659 0.042 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.277 3.723 3 O -0.348 6.348 4 C -0.193 4.193 5 C -0.087 4.087 6 C -0.115 4.115 7 C 0.020 3.980 8 C 0.019 3.981 9 C -0.320 4.320 10 C -0.085 4.085 11 C -0.289 4.289 12 C 0.130 3.870 13 C -0.461 4.461 14 H 0.103 0.897 15 C -0.155 4.155 16 N -0.340 5.340 17 Si 0.733 3.267 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.189 1.189 21 N -0.177 5.177 22 C -0.148 4.148 23 C -0.101 4.101 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.651 4.214 0.040 9.623 hybrid contribution 0.262 -1.037 0.010 1.070 sum -8.389 3.176 0.050 8.971 Atomic orbital electron populations 1.22228 0.94385 1.04585 1.04485 1.22492 0.91398 0.87893 0.70544 1.90509 1.72233 1.34534 1.37476 1.20403 0.94745 0.94226 1.09970 1.21392 0.92777 0.98749 0.95822 1.21776 1.02889 0.90305 0.96555 1.19186 0.92153 0.93001 0.93629 1.19742 0.91614 0.90116 0.96589 1.21226 0.98293 0.93078 1.19380 1.20804 0.94251 0.96340 0.97076 1.21839 0.94066 0.98396 1.14635 1.18510 0.93684 0.86148 0.88704 1.19597 0.90065 0.93537 1.42863 0.89722 1.26036 1.00646 0.95378 0.93390 1.70032 1.37045 0.98297 1.28602 0.86354 0.82149 0.78249 0.79906 1.18920 1.20126 1.18927 1.68697 1.03375 1.29284 1.16336 1.21232 0.93659 0.98034 1.01892 1.21201 0.99285 0.91406 0.98207 0.88719 0.89828 0.89532 0.85486 0.82217 0.88248 0.88301 0.88103 0.91418 0.85293 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.84 9.75 36.01 0.35 -1.49 16 2 C 0.40 5.58 7.22 -30.72 -0.22 5.36 16 3 O -0.47 -8.13 17.08 5.57 0.10 -8.04 16 4 C -0.19 -2.98 5.87 -105.02 -0.62 -3.60 16 5 C -0.07 -1.23 9.58 -39.16 -0.38 -1.60 16 6 C -0.10 -1.96 9.55 -39.32 -0.38 -2.33 16 7 C 0.02 0.43 5.88 -104.80 -0.62 -0.18 16 8 C 0.16 3.84 6.73 -82.94 -0.56 3.28 16 9 C -0.30 -6.37 9.47 -38.78 -0.37 -6.74 16 10 C -0.06 -1.30 10.15 -39.39 -0.40 -1.70 16 11 C -0.27 -6.30 9.83 -38.63 -0.38 -6.68 16 12 C 0.26 6.74 6.55 -85.01 -0.56 6.18 16 13 C -0.43 -11.08 9.14 -37.71 -0.34 -11.42 16 14 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 15 C 0.07 1.73 5.50 -17.35 -0.10 1.64 16 16 N -0.72 -18.14 11.08 55.55 0.62 -17.52 16 17 Si 0.91 18.06 29.56 -169.99 -5.02 13.03 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 N -0.46 -12.22 6.90 -7.68 -0.05 -12.27 16 22 C -0.13 -2.12 9.39 -39.32 -0.37 -2.49 16 23 C -0.08 -1.15 9.35 -39.17 -0.37 -1.52 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.64 6.46 -51.93 -0.34 0.30 16 27 H 0.13 2.18 7.64 -52.49 -0.40 1.77 16 28 H 0.16 3.60 7.13 -52.49 -0.37 3.23 16 29 H 0.10 1.82 6.15 -52.49 -0.32 1.50 16 30 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 32 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 33 H 0.13 1.87 6.14 -52.48 -0.32 1.55 16 34 H 0.13 1.25 6.34 -52.49 -0.33 0.92 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -29.09 298.32 -8.49 -37.59 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.33 Total: 6.02 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -5.29 Total: -23.30 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.56 Total: -29.79 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.10 Total: -8.04 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.09 -8.49 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239627973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.718 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds