Wall clock time and date at job start Mon Mar 30 2020 00:47:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 O 1.21283 * 120.00233 * 2 1
4 4 C 1.46987 * 119.99748 * 180.02562 * 2 1 3
5 5 C 1.40054 * 120.03062 * 179.97438 * 4 2 1
6 6 C 1.36544 * 119.97609 * 179.97438 * 5 4 2
7 7 C 1.39826 * 120.02524 * 359.97438 * 6 5 4
8 8 C 1.47826 * 119.97099 * 179.97438 * 7 6 5
9 9 C 1.40329 * 120.35255 * 180.20899 * 8 7 6
10 10 C 1.36675 * 118.59696 * 180.26741 * 9 8 7
11 11 C 1.40884 * 119.25704 * 359.74716 * 10 9 8
12 12 C 1.40968 * 119.67544 * 180.02562 * 11 10 9
13 13 H 1.08004 * 119.99913 * 0.02562 * 12 11 10
14 14 C 1.40195 * 120.00042 * 180.02562 * 12 11 10
15 15 N 1.30651 * 119.99861 * 359.97438 * 14 12 11
16 16 Si 1.86801 * 119.99933 * 179.97438 * 14 12 11
17 17 H 1.48502 * 109.46906 * 0.02562 * 16 14 12
18 18 H 1.48502 * 109.46695 * 119.99635 * 16 14 12
19 19 H 1.48498 * 109.47345 * 239.99855 * 16 14 12
20 20 N 1.33795 * 120.65224 * 0.02562 * 11 10 9
21 21 C 1.31161 * 121.51652 * 359.97438 * 20 11 10
22 22 C 1.39828 * 120.05647 * 0.26733 * 7 6 5
23 23 C 1.36547 * 120.02807 * 359.49395 * 22 7 6
24 24 H 1.08996 * 109.46998 * 270.00224 * 1 2 3
25 25 H 1.09005 * 109.47193 * 29.99662 * 1 2 3
26 26 H 1.08994 * 109.47696 * 149.99751 * 1 2 3
27 27 H 1.08002 * 120.01007 * 359.95171 * 5 4 2
28 28 H 1.07997 * 119.98838 * 179.97438 * 6 5 4
29 29 H 1.08007 * 120.70297 * 0.02562 * 9 8 7
30 30 H 1.08002 * 120.37504 * 179.77062 * 10 9 8
31 31 H 0.97008 * 120.00071 * 180.02562 * 15 14 12
32 32 H 1.08002 * 119.65714 * 179.97438 * 21 20 11
33 33 H 1.08003 * 119.98486 * 179.74488 * 22 7 6
34 34 H 1.07996 * 120.01408 * 180.25241 * 23 22 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0503 0.0000
4 6 2.2419 -1.2730 -0.0006
5 6 3.6424 -1.2738 -0.0011
6 6 4.3240 -2.4570 -0.0011
7 6 3.6242 -3.6675 0.0000
8 6 4.3632 -4.9478 -0.0006
9 6 3.6690 -6.1673 -0.0039
10 6 4.3882 -7.3295 0.0012
11 6 5.7957 -7.2682 0.0043
12 6 6.5463 -8.4614 0.0091
13 1 6.0421 -9.4165 0.0100
14 6 7.9473 -8.4083 0.0127
15 7 8.5572 -7.2529 0.0111
16 14 8.9418 -9.9895 0.0198
17 1 8.0202 -11.1539 0.0199
18 1 9.8011 -10.0391 -1.1904
19 1 9.7947 -10.0325 1.2346
20 7 6.4271 -6.0885 0.0027
21 6 5.7649 -4.9564 -0.0023
22 6 2.2259 -3.6681 -0.0046
23 6 1.5420 -2.4862 0.0003
24 1 -0.3633 0.0000 1.0276
25 1 -0.3634 0.8900 -0.5138
26 1 -0.3634 -0.8899 -0.5138
27 1 4.1831 -0.3389 -0.0019
28 1 5.4039 -2.4578 -0.0019
29 1 2.5891 -6.1871 -0.0065
30 1 3.8833 -8.2842 0.0026
31 1 9.5265 -7.2161 0.0132
32 1 6.3051 -4.0212 -0.0030
33 1 1.6865 -4.6038 -0.0079
34 1 0.4621 -2.4870 0.0009
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001239630973.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:47:06
Heat of formation + Delta-G solvation = -3.578214 kcal
Electronic energy + Delta-G solvation = -18314.508098 eV
Core-core repulsion = 15369.125081 eV
Total energy + Delta-G solvation = -2945.383017 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 267.100 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.02439 -40.18019 -38.86516 -35.75361 -33.73853 -32.89885 -32.05089 -31.24335
-29.87639 -27.45465 -24.78328 -24.39920 -22.49522 -22.39821 -20.71294 -19.49685
-18.24026 -17.50555 -16.84067 -16.61338 -16.16860 -15.91096 -15.80601 -15.10743
-14.82621 -14.67700 -14.44110 -14.42344 -13.83507 -13.53171 -13.46375 -12.97886
-12.91517 -12.85993 -12.74300 -12.67226 -12.22841 -11.82874 -11.66676 -11.40055
-10.69436 -10.56499 -10.11136 -9.96809 -9.57859 -8.96058 -8.42516 -6.56443
-0.45790 0.58433 0.78814 1.14787 1.39507 1.43379 1.55771 1.75169
2.16790 2.70351 3.08563 3.24497 3.84079 3.89311 4.02404 4.04245
4.14344 4.29350 4.34764 4.50858 4.52429 4.70021 4.71563 4.80997
4.89075 5.00802 5.07694 5.13243 5.19023 5.35788 5.41907 5.48984
5.53591 5.73534 5.94307 6.03192 6.07310 6.19021 6.58460 6.63083
6.83315 8.06880 8.29739
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.055138 B = 0.003505 C = 0.003301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 507.697201 B = 7986.825457 C = 8479.362691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.398 3.602
3 O -0.517 6.517
4 C -0.228 4.228
5 C -0.057 4.057
6 C -0.172 4.172
7 C 0.045 3.955
8 C -0.281 4.281
9 C -0.031 4.031
10 C -0.286 4.286
11 C 0.217 3.783
12 C -0.438 4.438
13 H 0.099 0.901
14 C 0.018 3.982
15 N -0.740 5.740
16 Si 0.993 3.007
17 H -0.249 1.249
18 H -0.266 1.266
19 H -0.266 1.266
20 N -0.525 5.525
21 C 0.137 3.863
22 C -0.164 4.164
23 C -0.041 4.041
24 H 0.115 0.885
25 H 0.090 0.910
26 H 0.110 0.890
27 H 0.123 0.877
28 H 0.120 0.880
29 H 0.140 0.860
30 H 0.118 0.882
31 H 0.284 0.716
32 H 0.133 0.867
33 H 0.142 0.858
34 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.051 4.549 0.063 12.881
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.249 4.249
2 C 0.281 3.719
3 O -0.397 6.397
4 C -0.229 4.229
5 C -0.075 4.075
6 C -0.190 4.190
7 C 0.043 3.957
8 C -0.287 4.287
9 C -0.054 4.054
10 C -0.308 4.308
11 C 0.094 3.906
12 C -0.467 4.467
13 H 0.117 0.883
14 C -0.206 4.206
15 N -0.360 5.360
16 Si 0.812 3.188
17 H -0.172 1.172
18 H -0.190 1.190
19 H -0.190 1.190
20 N -0.238 5.238
21 C -0.031 4.031
22 C -0.182 4.182
23 C -0.059 4.059
24 H 0.134 0.866
25 H 0.109 0.891
26 H 0.129 0.871
27 H 0.141 0.859
28 H 0.138 0.862
29 H 0.158 0.842
30 H 0.136 0.864
31 H 0.095 0.905
32 H 0.150 0.850
33 H 0.160 0.840
34 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -10.617 5.105 0.063 11.781
hybrid contribution 0.182 -0.524 0.004 0.554
sum -10.435 4.582 0.067 11.396
Atomic orbital electron populations
1.22253 0.90272 1.06174 1.06213 1.23012 0.93512 0.86556 0.68801
1.90500 1.73490 1.35667 1.40075 1.20622 0.94103 0.95785 1.12429
1.21072 0.94268 0.97727 0.94480 1.20968 1.00318 0.91909 1.05782
1.19195 0.93913 0.91628 0.90930 1.19359 0.94027 0.92867 1.22406
1.21078 0.99496 0.91232 0.93584 1.21664 0.94757 0.98580 1.15826
1.19184 0.90380 0.92202 0.88817 1.20276 0.92301 0.93519 1.40650
0.88264 1.27195 0.99470 1.01390 0.92548 1.70189 1.10893 1.28138
1.26823 0.84995 0.77938 0.76951 0.78916 1.17185 1.19031 1.19022
1.68740 1.38405 0.97435 1.19211 1.23140 0.91126 0.96770 0.92042
1.21164 0.92635 0.99667 1.04746 1.21403 1.01443 0.89872 0.93168
0.86638 0.89124 0.87116 0.85922 0.86194 0.84247 0.86365 0.90488
0.84979 0.84009 0.81144
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.57 9.75 71.24 0.69 -1.87 16
2 C 0.40 9.72 7.22 27.98 0.20 9.92 16
3 O -0.52 -16.67 17.08 -3.04 -0.05 -16.72 16
4 C -0.23 -6.13 5.87 -20.10 -0.12 -6.25 16
5 C -0.06 -1.80 9.54 22.31 0.21 -1.58 16
6 C -0.17 -5.89 9.38 22.26 0.21 -5.68 16
7 C 0.04 1.58 5.89 -19.97 -0.12 1.46 16
8 C -0.28 -11.94 5.92 -19.76 -0.12 -12.06 16
9 C -0.03 -1.27 9.46 22.41 0.21 -1.06 16
10 C -0.29 -13.18 9.76 22.55 0.22 -12.96 16
11 C 0.22 11.57 6.55 40.16 0.26 11.83 16
12 C -0.44 -22.52 9.12 23.41 0.21 -22.31 16
13 H 0.10 4.66 7.85 -2.91 -0.02 4.64 16
14 C 0.02 0.86 5.50 85.34 0.47 1.33 16
15 N -0.74 -38.56 11.44 21.87 0.25 -38.31 16
16 Si 0.99 35.77 29.56 68.60 2.03 37.80 16
17 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16
18 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16
19 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16
20 N -0.53 -28.83 7.83 -188.18 -1.47 -30.31 16
21 C 0.14 6.61 10.60 85.26 0.90 7.51 16
22 C -0.16 -4.59 9.38 22.26 0.21 -4.38 16
23 C -0.04 -0.93 9.30 22.32 0.21 -0.72 16
24 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16
25 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16
26 H 0.11 0.93 6.45 -2.39 -0.02 0.92 16
27 H 0.12 3.79 7.64 -2.91 -0.02 3.76 16
28 H 0.12 4.11 6.19 -2.91 -0.02 4.10 16
29 H 0.14 4.48 6.28 -2.91 -0.02 4.46 16
30 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16
31 H 0.28 13.25 8.29 -92.70 -0.77 12.48 16
32 H 0.13 5.85 6.19 -2.91 -0.02 5.83 16
33 H 0.14 3.40 6.23 -2.91 -0.02 3.38 16
34 H 0.17 2.20 6.34 -2.91 -0.02 2.19 16
Total: -1.00 -65.96 296.26 5.55 -60.40
By element:
Atomic # 1 Polarization: 22.81 SS G_CDS: 1.14 Total: 23.95 kcal
Atomic # 6 Polarization: -40.48 SS G_CDS: 3.66 Total: -36.81 kcal
Atomic # 7 Polarization: -67.39 SS G_CDS: -1.22 Total: -68.61 kcal
Atomic # 8 Polarization: -16.67 SS G_CDS: -0.05 Total: -16.72 kcal
Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal
Total: -65.96 5.55 -60.40 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001239630973.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.823 kcal
(2) G-P(sol) polarization free energy of solvation -65.955 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.132 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds