Wall clock time and date at job start Mon Mar 30 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00233 * 2 1 4 4 C 1.46987 * 119.99748 * 180.02562 * 2 1 3 5 5 C 1.40054 * 120.03062 * 179.97438 * 4 2 1 6 6 C 1.36544 * 119.97609 * 179.97438 * 5 4 2 7 7 C 1.39826 * 120.02524 * 359.97438 * 6 5 4 8 8 C 1.47826 * 119.97099 * 179.97438 * 7 6 5 9 9 C 1.40329 * 120.35255 * 180.20899 * 8 7 6 10 10 C 1.36675 * 118.59696 * 180.26741 * 9 8 7 11 11 C 1.40884 * 119.25704 * 359.74716 * 10 9 8 12 12 C 1.40968 * 119.67544 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99913 * 0.02562 * 12 11 10 14 14 C 1.40195 * 120.00042 * 180.02562 * 12 11 10 15 15 N 1.30651 * 119.99861 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99933 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46906 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46695 * 119.99635 * 16 14 12 19 19 H 1.48498 * 109.47345 * 239.99855 * 16 14 12 20 20 N 1.33795 * 120.65224 * 0.02562 * 11 10 9 21 21 C 1.31161 * 121.51652 * 359.97438 * 20 11 10 22 22 C 1.39828 * 120.05647 * 0.26733 * 7 6 5 23 23 C 1.36547 * 120.02807 * 359.49395 * 22 7 6 24 24 H 1.08996 * 109.46998 * 270.00224 * 1 2 3 25 25 H 1.09005 * 109.47193 * 29.99662 * 1 2 3 26 26 H 1.08994 * 109.47696 * 149.99751 * 1 2 3 27 27 H 1.08002 * 120.01007 * 359.95171 * 5 4 2 28 28 H 1.07997 * 119.98838 * 179.97438 * 6 5 4 29 29 H 1.08007 * 120.70297 * 0.02562 * 9 8 7 30 30 H 1.08002 * 120.37504 * 179.77062 * 10 9 8 31 31 H 0.97008 * 120.00071 * 180.02562 * 15 14 12 32 32 H 1.08002 * 119.65714 * 179.97438 * 21 20 11 33 33 H 1.08003 * 119.98486 * 179.74488 * 22 7 6 34 34 H 1.07996 * 120.01408 * 180.25241 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2419 -1.2730 -0.0006 5 6 3.6424 -1.2738 -0.0011 6 6 4.3240 -2.4570 -0.0011 7 6 3.6242 -3.6675 0.0000 8 6 4.3632 -4.9478 -0.0006 9 6 3.6690 -6.1673 -0.0039 10 6 4.3882 -7.3295 0.0012 11 6 5.7957 -7.2682 0.0043 12 6 6.5463 -8.4614 0.0091 13 1 6.0421 -9.4165 0.0100 14 6 7.9473 -8.4083 0.0127 15 7 8.5572 -7.2529 0.0111 16 14 8.9418 -9.9895 0.0198 17 1 8.0202 -11.1539 0.0199 18 1 9.8011 -10.0391 -1.1904 19 1 9.7947 -10.0325 1.2346 20 7 6.4271 -6.0885 0.0027 21 6 5.7649 -4.9564 -0.0023 22 6 2.2259 -3.6681 -0.0046 23 6 1.5420 -2.4862 0.0003 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 4.1831 -0.3389 -0.0019 28 1 5.4039 -2.4578 -0.0019 29 1 2.5891 -6.1871 -0.0065 30 1 3.8833 -8.2842 0.0026 31 1 9.5265 -7.2161 0.0132 32 1 6.3051 -4.0212 -0.0030 33 1 1.6865 -4.6038 -0.0079 34 1 0.4621 -2.4870 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239630973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:06 Heat of formation + Delta-G solvation = -3.578214 kcal Electronic energy + Delta-G solvation = -18314.508098 eV Core-core repulsion = 15369.125081 eV Total energy + Delta-G solvation = -2945.383017 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02439 -40.18019 -38.86516 -35.75361 -33.73853 -32.89885 -32.05089 -31.24335 -29.87639 -27.45465 -24.78328 -24.39920 -22.49522 -22.39821 -20.71294 -19.49685 -18.24026 -17.50555 -16.84067 -16.61338 -16.16860 -15.91096 -15.80601 -15.10743 -14.82621 -14.67700 -14.44110 -14.42344 -13.83507 -13.53171 -13.46375 -12.97886 -12.91517 -12.85993 -12.74300 -12.67226 -12.22841 -11.82874 -11.66676 -11.40055 -10.69436 -10.56499 -10.11136 -9.96809 -9.57859 -8.96058 -8.42516 -6.56443 -0.45790 0.58433 0.78814 1.14787 1.39507 1.43379 1.55771 1.75169 2.16790 2.70351 3.08563 3.24497 3.84079 3.89311 4.02404 4.04245 4.14344 4.29350 4.34764 4.50858 4.52429 4.70021 4.71563 4.80997 4.89075 5.00802 5.07694 5.13243 5.19023 5.35788 5.41907 5.48984 5.53591 5.73534 5.94307 6.03192 6.07310 6.19021 6.58460 6.63083 6.83315 8.06880 8.29739 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.055138 B = 0.003505 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.697201 B = 7986.825457 C = 8479.362691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.398 3.602 3 O -0.517 6.517 4 C -0.228 4.228 5 C -0.057 4.057 6 C -0.172 4.172 7 C 0.045 3.955 8 C -0.281 4.281 9 C -0.031 4.031 10 C -0.286 4.286 11 C 0.217 3.783 12 C -0.438 4.438 13 H 0.099 0.901 14 C 0.018 3.982 15 N -0.740 5.740 16 Si 0.993 3.007 17 H -0.249 1.249 18 H -0.266 1.266 19 H -0.266 1.266 20 N -0.525 5.525 21 C 0.137 3.863 22 C -0.164 4.164 23 C -0.041 4.041 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.284 0.716 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 4.549 0.063 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.281 3.719 3 O -0.397 6.397 4 C -0.229 4.229 5 C -0.075 4.075 6 C -0.190 4.190 7 C 0.043 3.957 8 C -0.287 4.287 9 C -0.054 4.054 10 C -0.308 4.308 11 C 0.094 3.906 12 C -0.467 4.467 13 H 0.117 0.883 14 C -0.206 4.206 15 N -0.360 5.360 16 Si 0.812 3.188 17 H -0.172 1.172 18 H -0.190 1.190 19 H -0.190 1.190 20 N -0.238 5.238 21 C -0.031 4.031 22 C -0.182 4.182 23 C -0.059 4.059 24 H 0.134 0.866 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.158 0.842 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.617 5.105 0.063 11.781 hybrid contribution 0.182 -0.524 0.004 0.554 sum -10.435 4.582 0.067 11.396 Atomic orbital electron populations 1.22253 0.90272 1.06174 1.06213 1.23012 0.93512 0.86556 0.68801 1.90500 1.73490 1.35667 1.40075 1.20622 0.94103 0.95785 1.12429 1.21072 0.94268 0.97727 0.94480 1.20968 1.00318 0.91909 1.05782 1.19195 0.93913 0.91628 0.90930 1.19359 0.94027 0.92867 1.22406 1.21078 0.99496 0.91232 0.93584 1.21664 0.94757 0.98580 1.15826 1.19184 0.90380 0.92202 0.88817 1.20276 0.92301 0.93519 1.40650 0.88264 1.27195 0.99470 1.01390 0.92548 1.70189 1.10893 1.28138 1.26823 0.84995 0.77938 0.76951 0.78916 1.17185 1.19031 1.19022 1.68740 1.38405 0.97435 1.19211 1.23140 0.91126 0.96770 0.92042 1.21164 0.92635 0.99667 1.04746 1.21403 1.01443 0.89872 0.93168 0.86638 0.89124 0.87116 0.85922 0.86194 0.84247 0.86365 0.90488 0.84979 0.84009 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 9.75 71.24 0.69 -1.87 16 2 C 0.40 9.72 7.22 27.98 0.20 9.92 16 3 O -0.52 -16.67 17.08 -3.04 -0.05 -16.72 16 4 C -0.23 -6.13 5.87 -20.10 -0.12 -6.25 16 5 C -0.06 -1.80 9.54 22.31 0.21 -1.58 16 6 C -0.17 -5.89 9.38 22.26 0.21 -5.68 16 7 C 0.04 1.58 5.89 -19.97 -0.12 1.46 16 8 C -0.28 -11.94 5.92 -19.76 -0.12 -12.06 16 9 C -0.03 -1.27 9.46 22.41 0.21 -1.06 16 10 C -0.29 -13.18 9.76 22.55 0.22 -12.96 16 11 C 0.22 11.57 6.55 40.16 0.26 11.83 16 12 C -0.44 -22.52 9.12 23.41 0.21 -22.31 16 13 H 0.10 4.66 7.85 -2.91 -0.02 4.64 16 14 C 0.02 0.86 5.50 85.34 0.47 1.33 16 15 N -0.74 -38.56 11.44 21.87 0.25 -38.31 16 16 Si 0.99 35.77 29.56 68.60 2.03 37.80 16 17 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 18 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 19 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 20 N -0.53 -28.83 7.83 -188.18 -1.47 -30.31 16 21 C 0.14 6.61 10.60 85.26 0.90 7.51 16 22 C -0.16 -4.59 9.38 22.26 0.21 -4.38 16 23 C -0.04 -0.93 9.30 22.32 0.21 -0.72 16 24 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.11 0.93 6.45 -2.39 -0.02 0.92 16 27 H 0.12 3.79 7.64 -2.91 -0.02 3.76 16 28 H 0.12 4.11 6.19 -2.91 -0.02 4.10 16 29 H 0.14 4.48 6.28 -2.91 -0.02 4.46 16 30 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.28 13.25 8.29 -92.70 -0.77 12.48 16 32 H 0.13 5.85 6.19 -2.91 -0.02 5.83 16 33 H 0.14 3.40 6.23 -2.91 -0.02 3.38 16 34 H 0.17 2.20 6.34 -2.91 -0.02 2.19 16 Total: -1.00 -65.96 296.26 5.55 -60.40 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 1.14 Total: 23.95 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.66 Total: -36.81 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.22 Total: -68.61 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.05 Total: -16.72 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -65.96 5.55 -60.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239630973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.823 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds