Wall clock time and date at job start Mon Mar 30 2020 00:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21267 * 120.00386 * 2 1 4 4 C 1.47065 * 119.99548 * 180.02562 * 2 1 3 5 5 C 1.39967 * 120.05081 * 174.38685 * 4 2 1 6 6 C 1.37607 * 119.94765 * 179.97438 * 5 4 2 7 7 C 1.39532 * 120.05254 * 359.97438 * 6 5 4 8 8 C 1.48304 * 119.94681 * 179.97438 * 7 6 5 9 9 C 1.40089 * 120.82903 * 0.02562 * 8 7 6 10 10 C 1.38526 * 119.41212 * 179.97438 * 9 8 7 11 11 N 1.31455 * 121.15339 * 0.02562 * 10 9 8 12 12 C 1.33624 * 121.81410 * 359.97438 * 11 10 9 13 13 C 1.41414 * 119.78104 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00786 * 185.26302 * 13 12 11 15 15 C 1.40046 * 119.99592 * 5.26401 * 13 12 11 16 16 N 1.30732 * 119.99957 * 184.68924 * 15 13 12 17 17 Si 1.86798 * 120.00087 * 4.68699 * 15 13 12 18 18 H 1.48500 * 109.47073 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.46987 * 300.00193 * 17 15 13 20 20 H 1.48496 * 109.47240 * 60.00023 * 17 15 13 21 21 C 1.39354 * 120.82617 * 180.23731 * 8 7 6 22 22 C 1.39526 * 120.10144 * 0.25224 * 7 6 5 23 23 C 1.37609 * 120.05498 * 359.49063 * 22 7 6 24 24 H 1.09002 * 109.47779 * 185.09787 * 1 2 3 25 25 H 1.09000 * 109.47163 * 305.10647 * 1 2 3 26 26 H 1.09007 * 109.46969 * 65.10204 * 1 2 3 27 27 H 1.08001 * 120.02362 * 359.94831 * 5 4 2 28 28 H 1.08006 * 119.97178 * 180.02562 * 6 5 4 29 29 H 1.07998 * 120.29079 * 359.95301 * 9 8 7 30 30 H 1.08004 * 119.41960 * 179.97438 * 10 9 8 31 31 H 0.97001 * 120.00340 * 354.97703 * 16 15 13 32 32 H 1.08002 * 120.58284 * 0.02562 * 21 8 7 33 33 H 1.08004 * 119.97001 * 179.72040 * 22 7 6 34 34 H 1.07994 * 120.02778 * 180.24865 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2422 -1.2737 -0.0006 5 6 3.6368 -1.2779 -0.1191 6 6 4.3227 -2.4709 -0.1188 7 6 3.6290 -3.6757 0.0000 8 6 4.3704 -4.9600 -0.0006 9 6 5.7661 -4.9832 -0.1188 10 6 6.4290 -6.1996 -0.1155 11 7 5.7713 -7.3322 -0.0038 12 6 4.4405 -7.3655 0.1116 13 6 3.7765 -8.6086 0.2286 14 1 2.6972 -8.6458 0.2365 15 6 4.5186 -9.7916 0.3343 16 7 3.9077 -10.9473 0.3501 17 14 6.3814 -9.7181 0.4526 18 1 6.9257 -11.0960 0.5541 19 1 6.9287 -9.0583 -0.7600 20 1 6.7707 -8.9416 1.6570 21 6 3.6958 -6.1741 0.1120 22 6 2.2383 -3.6742 0.1135 23 6 1.5486 -2.4835 0.1190 24 1 -0.3635 -1.0236 0.0913 25 1 -0.3633 0.5910 0.8407 26 1 -0.3633 0.4327 -0.9322 27 1 4.1742 -0.3456 -0.2110 28 1 5.3989 -2.4745 -0.2098 29 1 6.3203 -4.0610 -0.2121 30 1 7.5051 -6.2176 -0.2070 31 1 2.9385 -10.9834 0.3623 32 1 2.6197 -6.1986 0.2013 33 1 1.7031 -4.6082 0.2008 34 1 0.4725 -2.4827 0.2109 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239631057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:36 Heat of formation + Delta-G solvation = -16.744527 kcal Electronic energy + Delta-G solvation = -18448.721656 eV Core-core repulsion = 15502.767705 eV Total energy + Delta-G solvation = -2945.953952 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21520 -40.46009 -39.07656 -35.86548 -34.47654 -32.74118 -32.23085 -31.41783 -29.73089 -27.52063 -25.50217 -24.19177 -22.79619 -22.34637 -20.90528 -20.18281 -18.41841 -17.35530 -17.12684 -16.78660 -16.28402 -16.01304 -15.84321 -15.33019 -15.04510 -14.82492 -14.77163 -14.57213 -14.26368 -13.95476 -13.79906 -13.05390 -13.03597 -12.92568 -12.64489 -12.58995 -12.03417 -11.74853 -11.59881 -11.31154 -11.10341 -10.80826 -10.05133 -9.91267 -9.65526 -9.33684 -9.24930 -6.84103 -0.69589 0.37075 0.65764 0.70725 1.50524 1.62915 1.76499 2.07777 2.48388 2.60613 2.87777 3.07218 3.58453 3.60775 3.71416 3.89745 3.97248 4.10620 4.28725 4.31833 4.44349 4.54976 4.64264 4.65391 4.72149 4.81091 5.00768 5.03429 5.15284 5.22437 5.31068 5.33658 5.36623 5.42666 5.65232 5.81683 5.88350 6.01275 6.33661 6.49071 6.62640 7.55931 7.95414 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.041085 B = 0.004014 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.351561 B = 6973.467720 C = 7629.212534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.400 3.600 3 O -0.503 6.503 4 C -0.189 4.189 5 C -0.069 4.069 6 C -0.122 4.122 7 C -0.019 4.019 8 C 0.009 3.991 9 C -0.281 4.281 10 C 0.134 3.866 11 N -0.596 5.596 12 C 0.235 3.765 13 C -0.510 4.510 14 H 0.067 0.933 15 C 0.016 3.984 16 N -0.830 5.830 17 Si 1.188 2.812 18 H -0.333 1.333 19 H -0.275 1.275 20 H -0.295 1.295 21 C -0.255 4.255 22 C -0.133 4.133 23 C -0.058 4.058 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.281 0.719 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 17.578 -0.662 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.282 3.718 3 O -0.382 6.382 4 C -0.190 4.190 5 C -0.087 4.087 6 C -0.140 4.140 7 C -0.019 4.019 8 C 0.002 3.998 9 C -0.303 4.303 10 C -0.025 4.025 11 N -0.315 5.315 12 C 0.111 3.889 13 C -0.543 4.543 14 H 0.085 0.915 15 C -0.201 4.201 16 N -0.453 5.453 17 Si 1.021 2.979 18 H -0.267 1.267 19 H -0.203 1.203 20 H -0.224 1.224 21 C -0.277 4.277 22 C -0.151 4.151 23 C -0.076 4.076 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.023 16.353 -0.602 16.640 hybrid contribution -2.110 1.063 -0.057 2.363 sum -5.133 17.416 -0.659 18.168 Atomic orbital electron populations 1.22294 0.90374 1.06689 1.06039 1.22994 0.93445 0.86476 0.68925 1.90520 1.73262 1.35410 1.39042 1.20819 0.94733 0.95652 1.07795 1.21469 0.93772 0.98303 0.95167 1.21363 1.01275 0.90748 1.00606 1.19260 0.93927 0.92017 0.96736 1.19085 0.93853 0.91624 0.95196 1.21760 0.93502 0.99059 1.15944 1.22746 1.00378 0.87689 0.91698 1.66469 1.09356 1.30081 1.25630 1.18736 0.88344 0.93623 0.88220 1.20778 0.95231 0.92414 1.45843 0.91478 1.28529 1.12946 0.90525 0.88088 1.70672 1.13215 1.27684 1.33775 0.81372 0.67656 0.70016 0.78894 1.26652 1.20288 1.22364 1.21899 0.99773 0.92026 1.13955 1.21474 0.93226 0.99589 1.00787 1.21712 1.01624 0.89765 0.94491 0.87635 0.87708 0.87298 0.84394 0.83762 0.83547 0.81687 0.90844 0.86380 0.84849 0.81045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 10.19 71.23 0.73 -1.38 16 2 C 0.40 8.04 7.21 28.00 0.20 8.24 16 3 O -0.50 -13.70 17.09 -2.99 -0.05 -13.75 16 4 C -0.19 -4.16 5.87 -20.13 -0.12 -4.28 16 5 C -0.07 -1.67 9.58 22.54 0.22 -1.46 16 6 C -0.12 -3.20 9.43 22.43 0.21 -2.99 16 7 C -0.02 -0.59 5.88 -19.98 -0.12 -0.71 16 8 C 0.01 0.32 5.91 -19.88 -0.12 0.20 16 9 C -0.28 -10.03 9.51 22.79 0.22 -9.82 16 10 C 0.13 5.32 11.17 84.82 0.95 6.26 16 11 N -0.60 -28.97 4.50 -189.36 -0.85 -29.82 16 12 C 0.23 11.96 6.40 40.20 0.26 12.21 16 13 C -0.51 -28.08 9.58 23.49 0.22 -27.85 16 14 H 0.07 3.72 8.05 -2.91 -0.02 3.70 16 15 C 0.02 0.86 5.52 85.30 0.47 1.33 16 16 N -0.83 -46.19 13.65 21.84 0.30 -45.89 16 17 Si 1.19 57.46 25.61 68.60 1.76 59.22 16 18 H -0.33 -15.85 7.11 99.48 0.71 -15.14 16 19 H -0.28 -13.03 6.60 99.48 0.66 -12.37 16 20 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 21 C -0.25 -11.23 9.22 23.09 0.21 -11.02 16 22 C -0.13 -3.51 9.42 22.43 0.21 -3.30 16 23 C -0.06 -1.16 9.43 22.54 0.21 -0.95 16 24 H 0.11 0.68 5.61 -2.39 -0.01 0.67 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.14 3.12 7.65 -2.91 -0.02 3.10 16 28 H 0.14 3.32 6.26 -2.91 -0.02 3.30 16 29 H 0.15 4.09 6.31 -2.91 -0.02 4.07 16 30 H 0.17 5.28 8.06 -2.91 -0.02 5.25 16 31 H 0.28 15.06 8.72 -92.71 -0.81 14.25 16 32 H 0.12 4.84 6.31 -2.91 -0.02 4.82 16 33 H 0.13 3.50 6.27 -2.91 -0.02 3.48 16 34 H 0.17 1.99 5.93 -2.91 -0.02 1.98 16 Total: -1.00 -66.21 291.44 5.96 -60.26 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.05 Total: 5.48 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 3.76 Total: -35.50 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -0.55 Total: -75.71 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.05 Total: -13.75 kcal Atomic # 14 Polarization: 57.46 SS G_CDS: 1.76 Total: 59.22 kcal Total: -66.21 5.96 -60.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239631057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.510 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds