Wall clock time and date at job start Mon Mar 30 2020 00:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99896 * 2 1 4 4 C 1.46996 * 120.00352 * 179.97438 * 2 1 3 5 5 C 1.40000 * 120.05446 * 180.02562 * 4 2 1 6 6 C 1.37103 * 119.94509 * 179.97438 * 5 4 2 7 7 C 1.39553 * 120.05196 * 0.02562 * 6 5 4 8 8 C 1.48270 * 119.94103 * 179.97438 * 7 6 5 9 9 C 1.39777 * 120.41983 * 0.02562 * 8 7 6 10 10 N 1.31898 * 121.13693 * 179.97438 * 9 8 7 11 11 C 1.31535 * 122.13429 * 359.76450 * 10 9 8 12 12 C 1.40776 * 120.68196 * 0.49915 * 11 10 9 13 13 C 1.41447 * 120.60152 * 179.76683 * 12 11 10 14 14 H 1.08003 * 119.99715 * 335.44485 * 13 12 11 15 15 C 1.39930 * 119.99922 * 155.44050 * 13 12 11 16 16 N 1.30823 * 120.00330 * 343.64619 * 15 13 12 17 17 Si 1.86800 * 119.99933 * 163.64530 * 15 13 12 18 18 H 1.48501 * 109.47201 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47290 * 120.00156 * 17 15 13 20 20 H 1.48505 * 109.47005 * 240.00312 * 17 15 13 21 21 C 1.39232 * 120.41676 * 179.97438 * 8 7 6 22 22 C 1.39545 * 120.11087 * 0.24978 * 7 6 5 23 23 C 1.37104 * 120.05141 * 359.48796 * 22 7 6 24 24 H 1.09002 * 109.47454 * 240.00191 * 1 2 3 25 25 H 1.08994 * 109.47347 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47005 * 120.00616 * 1 2 3 27 27 H 1.08001 * 120.02407 * 359.95934 * 5 4 2 28 28 H 1.07997 * 119.97057 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.43662 * 359.97438 * 9 8 7 30 30 H 1.08000 * 119.66166 * 180.27136 * 11 10 9 31 31 H 0.97001 * 120.00156 * 180.02562 * 16 15 13 32 32 H 1.08006 * 120.95754 * 359.97438 * 21 8 7 33 33 H 1.07993 * 119.97487 * 179.74579 * 22 7 6 34 34 H 1.08002 * 120.02757 * 180.24812 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2730 0.0006 5 6 3.6420 -1.2742 0.0011 6 6 4.3254 -2.4628 0.0022 7 6 3.6265 -3.6707 0.0022 8 6 4.3679 -4.9547 0.0027 9 6 5.7657 -4.9649 0.0038 10 7 6.4395 -6.0987 0.0049 11 6 5.8394 -7.2692 0.0095 12 6 4.4343 -7.3561 0.0031 13 6 3.7908 -8.6157 0.0031 14 1 4.3046 -9.4846 -0.3810 15 6 2.4886 -8.7361 0.5009 16 7 1.9836 -7.7881 1.2477 17 14 1.4714 -10.2504 0.0991 18 1 2.2658 -11.1676 -0.7569 19 1 1.0993 -10.9450 1.3577 20 1 0.2400 -9.8420 -0.6236 21 6 3.6807 -6.1656 0.0033 22 6 2.2310 -3.6721 -0.0042 23 6 1.5432 -2.4861 0.0002 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 4.1833 -0.3396 0.0004 28 1 5.4053 -2.4643 0.0030 29 1 6.3032 -4.0281 0.0038 30 1 6.4307 -8.1729 0.0146 31 1 1.0810 -7.8717 1.5931 32 1 2.6009 -6.1916 0.0037 33 1 1.6924 -4.6082 -0.0083 34 1 0.4632 -2.4877 -0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239631782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:09 Heat of formation + Delta-G solvation = 1.251024 kcal Electronic energy + Delta-G solvation = -18618.308397 eV Core-core repulsion = 15673.134791 eV Total energy + Delta-G solvation = -2945.173606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88347 -38.75737 -37.55322 -34.24772 -32.76460 -31.34359 -30.41904 -30.06709 -28.15512 -25.81228 -23.84173 -22.87018 -21.01962 -20.90409 -19.59677 -17.64355 -16.84523 -15.79273 -15.62189 -15.39407 -15.00277 -14.95313 -14.43923 -13.84414 -13.63467 -13.34600 -13.11882 -12.91271 -12.40001 -12.33846 -12.06903 -11.96380 -11.68925 -11.46724 -11.37825 -11.29169 -10.76140 -10.53207 -9.98539 -9.69515 -9.53917 -9.35375 -8.79294 -8.27760 -8.02004 -7.41197 -6.98727 -4.64823 0.68843 1.69542 2.18516 2.62304 2.94342 2.99223 2.99521 3.06133 3.74534 4.12018 4.14365 4.49984 4.92386 5.08112 5.15335 5.26221 5.30365 5.37309 5.50043 5.59999 5.70022 5.81825 5.93473 6.06756 6.20108 6.37339 6.47963 6.58382 6.62476 6.64615 6.91218 6.96730 7.06617 7.18505 7.49982 7.57523 7.67987 7.74418 8.24866 8.50732 8.53632 9.45080 9.91441 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.004969 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.508534 B = 5633.517149 C = 6864.291594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.472 6.472 4 C -0.202 4.202 5 C -0.057 4.057 6 C -0.138 4.138 7 C 0.033 3.967 8 C -0.108 4.108 9 C -0.017 4.017 10 N -0.470 5.470 11 C -0.011 4.011 12 C 0.058 3.942 13 C -0.448 4.448 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.792 5.792 17 Si 0.913 3.087 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.108 4.108 22 C -0.132 4.132 23 C -0.067 4.067 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.284 0.716 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 6.826 -1.648 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.278 3.722 3 O -0.350 6.350 4 C -0.203 4.203 5 C -0.075 4.075 6 C -0.156 4.156 7 C 0.032 3.968 8 C -0.110 4.110 9 C -0.175 4.175 10 N -0.177 5.177 11 C -0.172 4.172 12 C 0.054 3.946 13 C -0.477 4.477 14 H 0.104 0.896 15 C -0.144 4.144 16 N -0.417 5.417 17 Si 0.737 3.263 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.085 4.085 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.101 7.461 -1.506 9.163 hybrid contribution -1.547 -0.872 0.006 1.776 sum -6.648 6.589 -1.500 9.479 Atomic orbital electron populations 1.22241 0.94232 1.04664 1.04557 1.22448 0.91481 0.87767 0.70469 1.90505 1.72293 1.34506 1.37653 1.20352 0.94593 0.94335 1.11007 1.21125 0.93048 0.98301 0.95011 1.21122 1.00487 0.91363 1.02655 1.19313 0.92962 0.92961 0.91536 1.19508 0.94505 0.91844 1.05139 1.21852 0.89857 0.95276 1.10550 1.66968 1.41573 0.98701 1.10470 1.22622 0.92184 0.93906 1.08455 1.18492 0.92304 0.93910 0.89891 1.19617 0.98008 0.95012 1.35085 0.89635 1.25976 0.97987 0.98182 0.92294 1.69769 1.16294 1.33068 1.22525 0.86167 0.79646 0.81097 0.79399 1.18156 1.19749 1.19512 1.21930 1.00385 0.90152 1.00833 1.21241 0.93870 0.98538 1.01295 1.21175 0.99614 0.91406 0.96340 0.88882 0.90091 0.88922 0.85436 0.85181 0.85833 0.85371 0.90459 0.84690 0.84674 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 8.92 36.00 0.32 -1.48 16 2 C 0.40 5.31 7.22 -30.76 -0.22 5.08 16 3 O -0.47 -7.69 17.06 5.56 0.09 -7.59 16 4 C -0.20 -2.93 5.87 -105.03 -0.62 -3.55 16 5 C -0.06 -0.87 9.56 -39.33 -0.38 -1.25 16 6 C -0.14 -2.29 9.39 -39.50 -0.37 -2.66 16 7 C 0.03 0.62 5.88 -104.79 -0.62 0.01 16 8 C -0.11 -2.37 5.89 -104.83 -0.62 -2.98 16 9 C -0.02 -0.38 10.60 -16.95 -0.18 -0.56 16 10 N -0.47 -11.23 10.32 -12.27 -0.13 -11.36 16 11 C -0.01 -0.26 10.96 -16.72 -0.18 -0.45 16 12 C 0.06 1.46 5.59 -106.71 -0.60 0.86 16 13 C -0.45 -10.88 9.09 -37.73 -0.34 -11.23 16 14 H 0.09 1.98 7.90 -52.48 -0.41 1.57 16 15 C 0.07 1.69 5.20 -17.35 -0.09 1.60 16 16 N -0.79 -18.52 10.89 55.55 0.61 -17.92 16 17 Si 0.91 17.05 29.59 -169.99 -5.03 12.02 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 C -0.11 -2.57 8.16 -38.20 -0.31 -2.88 16 22 C -0.13 -2.23 9.39 -39.51 -0.37 -2.60 16 23 C -0.07 -0.94 9.43 -39.33 -0.37 -1.31 16 24 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 26 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.13 1.82 7.64 -52.49 -0.40 1.42 16 28 H 0.13 1.98 6.19 -52.49 -0.33 1.66 16 29 H 0.12 2.40 6.18 -52.49 -0.32 2.07 16 30 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 31 H 0.28 5.99 8.30 -40.82 -0.34 5.65 16 32 H 0.14 3.19 4.43 -52.48 -0.23 2.96 16 33 H 0.14 2.34 6.24 -52.49 -0.33 2.01 16 34 H 0.13 1.34 7.03 -52.49 -0.37 0.97 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -27.68 296.57 -8.14 -35.82 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.21 Total: 7.96 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -4.94 Total: -23.39 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.48 Total: -29.28 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.68 -8.14 -35.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239631782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.072 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds