Wall clock time and date at job start Mon Mar 30 2020 00:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99896 * 2 1 4 4 C 1.46996 * 120.00352 * 179.97438 * 2 1 3 5 5 C 1.40000 * 120.05446 * 180.02562 * 4 2 1 6 6 C 1.37103 * 119.94509 * 179.97438 * 5 4 2 7 7 C 1.39553 * 120.05196 * 0.02562 * 6 5 4 8 8 C 1.48270 * 119.94103 * 179.97438 * 7 6 5 9 9 C 1.39777 * 120.41983 * 0.02562 * 8 7 6 10 10 N 1.31898 * 121.13693 * 179.97438 * 9 8 7 11 11 C 1.31535 * 122.13429 * 359.76450 * 10 9 8 12 12 C 1.40776 * 120.68196 * 0.49915 * 11 10 9 13 13 C 1.41447 * 120.60152 * 179.76683 * 12 11 10 14 14 H 1.08003 * 119.99715 * 335.44485 * 13 12 11 15 15 C 1.39930 * 119.99922 * 155.44050 * 13 12 11 16 16 N 1.30823 * 120.00330 * 343.64619 * 15 13 12 17 17 Si 1.86800 * 119.99933 * 163.64530 * 15 13 12 18 18 H 1.48501 * 109.47201 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47290 * 120.00156 * 17 15 13 20 20 H 1.48505 * 109.47005 * 240.00312 * 17 15 13 21 21 C 1.39232 * 120.41676 * 179.97438 * 8 7 6 22 22 C 1.39545 * 120.11087 * 0.24978 * 7 6 5 23 23 C 1.37104 * 120.05141 * 359.48796 * 22 7 6 24 24 H 1.09002 * 109.47454 * 240.00191 * 1 2 3 25 25 H 1.08994 * 109.47347 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47005 * 120.00616 * 1 2 3 27 27 H 1.08001 * 120.02407 * 359.95934 * 5 4 2 28 28 H 1.07997 * 119.97057 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.43662 * 359.97438 * 9 8 7 30 30 H 1.08000 * 119.66166 * 180.27136 * 11 10 9 31 31 H 0.97001 * 120.00156 * 180.02562 * 16 15 13 32 32 H 1.08006 * 120.95754 * 359.97438 * 21 8 7 33 33 H 1.07993 * 119.97487 * 179.74579 * 22 7 6 34 34 H 1.08002 * 120.02757 * 180.24812 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2730 0.0006 5 6 3.6420 -1.2742 0.0011 6 6 4.3254 -2.4628 0.0022 7 6 3.6265 -3.6707 0.0022 8 6 4.3679 -4.9547 0.0027 9 6 5.7657 -4.9649 0.0038 10 7 6.4395 -6.0987 0.0049 11 6 5.8394 -7.2692 0.0095 12 6 4.4343 -7.3561 0.0031 13 6 3.7908 -8.6157 0.0031 14 1 4.3046 -9.4846 -0.3810 15 6 2.4886 -8.7361 0.5009 16 7 1.9836 -7.7881 1.2477 17 14 1.4714 -10.2504 0.0991 18 1 2.2658 -11.1676 -0.7569 19 1 1.0993 -10.9450 1.3577 20 1 0.2400 -9.8420 -0.6236 21 6 3.6807 -6.1656 0.0033 22 6 2.2310 -3.6721 -0.0042 23 6 1.5432 -2.4861 0.0002 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 4.1833 -0.3396 0.0004 28 1 5.4053 -2.4643 0.0030 29 1 6.3032 -4.0281 0.0038 30 1 6.4307 -8.1729 0.0146 31 1 1.0810 -7.8717 1.5931 32 1 2.6009 -6.1916 0.0037 33 1 1.6924 -4.6082 -0.0083 34 1 0.4632 -2.4877 -0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239631782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:09 Heat of formation + Delta-G solvation = -12.539048 kcal Electronic energy + Delta-G solvation = -18618.906380 eV Core-core repulsion = 15673.134791 eV Total energy + Delta-G solvation = -2945.771588 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13858 -40.27807 -38.93993 -36.00780 -34.19104 -32.68717 -32.07411 -31.23826 -29.42951 -27.58766 -25.21032 -24.38395 -22.57852 -22.39250 -20.79544 -19.30872 -18.18799 -17.37990 -17.19477 -16.79349 -16.39272 -15.96558 -15.90378 -15.18098 -14.89030 -14.81354 -14.53450 -14.47164 -13.75395 -13.58290 -13.34478 -13.16408 -13.09463 -12.97353 -12.86175 -12.77560 -12.27239 -11.92102 -11.65248 -11.23136 -10.86547 -10.78562 -10.08302 -10.02197 -9.81421 -9.00868 -8.70060 -6.48765 -0.60778 0.45291 0.71002 0.96407 1.41406 1.48323 1.56061 1.63058 2.18873 2.64098 2.93581 3.13902 3.69077 3.73309 3.83968 3.97255 4.09757 4.23299 4.38707 4.41616 4.50611 4.67929 4.70210 4.73707 4.87430 4.89053 5.09536 5.12638 5.18741 5.21556 5.32432 5.45063 5.49497 5.80543 5.85980 5.90160 5.99705 6.44245 6.53852 6.70590 6.73536 7.63064 8.22327 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.004969 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.508534 B = 5633.517149 C = 6864.291594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.401 3.599 3 O -0.505 6.505 4 C -0.197 4.197 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.001 4.001 8 C -0.101 4.101 9 C -0.031 4.031 10 N -0.482 5.482 11 C -0.037 4.037 12 C 0.035 3.965 13 C -0.478 4.478 14 H 0.086 0.914 15 C 0.039 3.961 16 N -0.816 5.816 17 Si 0.986 3.014 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.051 4.051 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.295 0.705 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 7.813 -1.758 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.283 3.717 3 O -0.385 6.385 4 C -0.198 4.198 5 C -0.083 4.083 6 C -0.153 4.153 7 C -0.002 4.002 8 C -0.103 4.103 9 C -0.189 4.189 10 N -0.189 5.189 11 C -0.198 4.198 12 C 0.031 3.969 13 C -0.508 4.508 14 H 0.104 0.896 15 C -0.177 4.177 16 N -0.441 5.441 17 Si 0.806 3.194 18 H -0.182 1.182 19 H -0.191 1.191 20 H -0.185 1.185 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.069 4.069 24 H 0.133 0.867 25 H 0.106 0.894 26 H 0.134 0.866 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.564 8.454 -1.613 11.458 hybrid contribution -0.811 -0.989 0.065 1.281 sum -8.375 7.465 -1.549 11.325 Atomic orbital electron populations 1.22289 0.90232 1.06001 1.06601 1.22971 0.93481 0.86356 0.68937 1.90510 1.73420 1.35345 1.39187 1.20741 0.94487 0.95531 1.09053 1.21315 0.93938 0.98112 0.94923 1.21177 1.00961 0.91032 1.02144 1.19276 0.93880 0.92099 0.94918 1.19782 0.94686 0.92941 1.02919 1.22329 0.90490 0.95753 1.10363 1.66964 1.42074 0.99102 1.10742 1.22774 0.92360 0.94470 1.10150 1.18819 0.92868 0.94865 0.90326 1.19879 0.99470 0.94966 1.36440 0.89603 1.26782 0.98294 1.01211 0.91450 1.69800 1.17058 1.34660 1.22548 0.85085 0.77917 0.77142 0.79223 1.18193 1.19090 1.18477 1.21985 1.00375 0.90704 1.02551 1.21286 0.93252 0.99481 1.01626 1.21487 1.01542 0.89716 0.94155 0.86689 0.89357 0.86580 0.84505 0.84458 0.83314 0.84679 0.89429 0.84949 0.85597 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 8.92 71.24 0.64 -1.98 16 2 C 0.40 9.39 7.22 27.98 0.20 9.59 16 3 O -0.51 -15.36 17.06 -3.02 -0.05 -15.41 16 4 C -0.20 -5.18 5.87 -20.13 -0.12 -5.30 16 5 C -0.06 -1.89 9.56 22.43 0.21 -1.67 16 6 C -0.14 -4.37 9.39 22.32 0.21 -4.17 16 7 C 0.00 -0.03 5.88 -19.98 -0.12 -0.15 16 8 C -0.10 -4.55 5.89 -20.00 -0.12 -4.67 16 9 C -0.03 -1.41 10.60 85.06 0.90 -0.51 16 10 N -0.48 -23.69 10.32 -192.72 -1.99 -25.68 16 11 C -0.04 -1.89 10.96 85.36 0.94 -0.95 16 12 C 0.04 1.84 5.59 -21.22 -0.12 1.72 16 13 C -0.48 -23.98 9.09 23.47 0.21 -23.77 16 14 H 0.09 4.12 7.90 -2.91 -0.02 4.10 16 15 C 0.04 1.80 5.20 85.25 0.44 2.24 16 16 N -0.82 -38.43 10.89 21.82 0.24 -38.19 16 17 Si 0.99 34.55 29.59 68.60 2.03 36.58 16 18 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 19 H -0.27 -9.01 7.11 99.48 0.71 -8.31 16 20 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 21 C -0.13 -6.45 8.16 23.16 0.19 -6.26 16 22 C -0.14 -4.54 9.39 22.32 0.21 -4.33 16 23 C -0.05 -1.27 9.43 22.43 0.21 -1.06 16 24 H 0.11 1.12 8.08 -2.39 -0.02 1.10 16 25 H 0.09 1.12 8.12 -2.39 -0.02 1.11 16 26 H 0.12 1.09 8.08 -2.39 -0.02 1.07 16 27 H 0.14 3.70 7.64 -2.91 -0.02 3.68 16 28 H 0.14 4.10 6.19 -2.91 -0.02 4.08 16 29 H 0.15 5.77 6.18 -2.91 -0.02 5.75 16 30 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 31 H 0.29 12.30 8.30 -92.71 -0.77 11.53 16 32 H 0.13 6.47 4.43 -2.91 -0.01 6.46 16 33 H 0.13 4.34 6.24 -2.91 -0.02 4.33 16 34 H 0.17 2.72 7.03 -2.91 -0.02 2.70 16 Total: -1.00 -61.55 296.57 5.26 -56.29 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.14 Total: 27.67 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 3.89 Total: -41.25 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -1.75 Total: -63.87 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.05 Total: -15.41 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -61.55 5.26 -56.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239631782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.750 kcal (2) G-P(sol) polarization free energy of solvation -61.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds