Wall clock time and date at job start Mon Mar 30 2020 00:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99674 * 2 1 4 4 C 1.46959 * 119.99772 * 179.97438 * 2 1 3 5 5 C 1.40073 * 120.02616 * 359.72317 * 4 2 1 6 6 C 1.36528 * 119.98180 * 180.27376 * 5 4 2 7 7 C 1.39888 * 120.01786 * 359.97438 * 6 5 4 8 8 C 1.47685 * 119.97245 * 180.02562 * 7 6 5 9 9 C 1.39386 * 120.78493 * 130.02251 * 8 7 6 10 10 N 1.31653 * 120.65768 * 179.97438 * 9 8 7 11 11 C 1.32216 * 122.51037 * 359.97438 * 10 9 8 12 12 C 1.36510 * 121.52359 * 0.02985 * 11 10 9 13 13 C 1.41121 * 119.10824 * 359.69158 * 12 11 10 14 14 C 1.40895 * 121.11071 * 180.27176 * 13 12 11 15 15 H 1.07998 * 119.99598 * 154.79849 * 14 13 12 16 16 C 1.40265 * 120.00421 * 334.79903 * 14 13 12 17 17 N 1.30625 * 119.99789 * 344.20948 * 16 14 13 18 18 Si 1.86799 * 120.00038 * 164.20682 * 16 14 13 19 19 H 1.48504 * 109.47207 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46914 * 120.00282 * 18 16 14 21 21 H 1.48500 * 109.46977 * 240.00163 * 18 16 14 22 22 C 1.39878 * 120.04655 * 0.04403 * 7 6 5 23 23 C 1.36521 * 120.02349 * 359.95147 * 22 7 6 24 24 H 1.09003 * 109.47478 * 240.00056 * 1 2 3 25 25 H 1.08997 * 109.47389 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47318 * 120.00134 * 1 2 3 27 27 H 1.08006 * 120.01030 * 0.25476 * 5 4 2 28 28 H 1.07995 * 119.99325 * 180.02562 * 6 5 4 29 29 H 1.08004 * 119.67316 * 359.97438 * 9 8 7 30 30 H 1.08000 * 119.23618 * 180.02562 * 11 10 9 31 31 H 1.08004 * 120.44446 * 179.97438 * 12 11 10 32 32 H 0.97000 * 120.00089 * 179.97438 * 17 16 14 33 33 H 1.07998 * 119.98594 * 179.97438 * 22 7 6 34 34 H 1.08006 * 120.00549 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2418 -1.2727 0.0006 5 6 1.5419 -2.4861 0.0070 6 6 2.2254 -3.6679 0.0131 7 6 3.6243 -3.6673 0.0125 8 6 4.3627 -4.9463 0.0186 9 6 5.3859 -5.1838 -0.8976 10 7 6.0428 -6.3247 -0.8896 11 6 5.7760 -7.2922 -0.0289 12 6 4.7934 -7.1617 0.9097 13 6 4.0512 -5.9627 0.9644 14 6 3.0316 -5.7806 1.9196 15 1 2.7562 -4.7842 2.2320 16 6 2.3742 -6.8933 2.4646 17 7 2.4742 -8.0596 1.8849 18 14 1.3559 -6.7074 4.0196 19 1 1.4036 -5.2953 4.4766 20 1 -0.0511 -7.0901 3.7385 21 1 1.9063 -7.5892 5.0801 22 6 4.3242 -2.4562 0.0065 23 6 3.6425 -1.2734 0.0003 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 0.4619 -2.4867 0.0073 28 1 1.6861 -4.6035 0.0177 29 1 5.6424 -4.4243 -1.6214 30 1 6.3487 -8.2070 -0.0695 31 1 4.5899 -7.9635 1.6041 32 1 2.0199 -8.8292 2.2620 33 1 5.4042 -2.4569 0.0065 34 1 4.1832 -0.3384 -0.0048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239632134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:47 Heat of formation + Delta-G solvation = 0.114674 kcal Electronic energy + Delta-G solvation = -18976.051779 eV Core-core repulsion = 16030.828897 eV Total energy + Delta-G solvation = -2945.222882 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69131 -38.67522 -37.40123 -34.38815 -32.48848 -31.16772 -30.24529 -29.89467 -28.10876 -26.18392 -23.63533 -22.20277 -21.31136 -20.79070 -19.40738 -17.80449 -16.70697 -15.82069 -15.36273 -15.19452 -14.80194 -14.63551 -14.44478 -13.86708 -13.60682 -13.12807 -12.92750 -12.76339 -12.44820 -12.23099 -12.17735 -11.87136 -11.69080 -11.57453 -11.36046 -11.07285 -10.58756 -10.43928 -9.97194 -9.65268 -9.52168 -8.71576 -8.56354 -8.16134 -8.01150 -7.50419 -7.06159 -4.79528 0.97975 1.97111 2.38526 2.63182 2.90282 2.92798 2.95846 3.09717 3.68300 4.32130 4.34144 4.44097 5.10324 5.25807 5.37803 5.42164 5.43849 5.56427 5.59379 5.75489 5.88328 5.92484 6.07075 6.16681 6.44354 6.51766 6.66129 6.71110 6.80204 6.88007 6.90258 7.15406 7.21584 7.34726 7.43350 7.67228 7.74755 7.89347 8.24031 8.48707 8.52773 9.45891 9.80686 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.006736 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.934075 B = 4155.872031 C = 5602.273398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.478 6.478 4 C -0.212 4.212 5 C -0.072 4.072 6 C -0.119 4.119 7 C 0.068 3.932 8 C -0.251 4.251 9 C 0.137 3.863 10 N -0.577 5.577 11 C 0.083 3.917 12 C -0.207 4.207 13 C 0.147 3.853 14 C -0.438 4.438 15 H 0.089 0.911 16 C 0.078 3.922 17 N -0.773 5.773 18 Si 0.909 3.091 19 H -0.256 1.256 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.149 4.149 23 C -0.056 4.056 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.287 0.713 33 H 0.122 0.878 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 5.668 -0.045 7.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.279 3.721 3 O -0.356 6.356 4 C -0.213 4.213 5 C -0.091 4.091 6 C -0.137 4.137 7 C 0.067 3.933 8 C -0.256 4.256 9 C -0.022 4.022 10 N -0.291 5.291 11 C -0.064 4.064 12 C -0.229 4.229 13 C 0.139 3.861 14 C -0.468 4.468 15 H 0.107 0.893 16 C -0.144 4.144 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.179 1.179 20 H -0.195 1.195 21 H -0.193 1.193 22 C -0.168 4.168 23 C -0.074 4.074 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.140 0.860 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.100 5.755 -0.629 7.094 hybrid contribution -1.244 -0.178 1.371 1.860 sum -5.344 5.577 0.742 7.760 Atomic orbital electron populations 1.22235 0.94526 1.04411 1.04481 1.22432 0.91362 0.87903 0.70365 1.90491 1.72314 1.34606 1.38185 1.20262 0.94504 0.94147 1.12400 1.21036 0.99383 0.91627 0.97017 1.21173 0.94049 0.98163 1.00311 1.19039 0.92680 0.92304 0.89250 1.19561 1.05382 0.96875 1.03807 1.22135 0.90807 0.93841 0.95459 1.67336 1.31342 1.02464 1.28007 1.21766 0.95905 0.96195 0.92500 1.21933 0.98045 1.00557 1.02350 1.17728 0.89908 0.89514 0.88915 1.19705 1.14512 0.94337 1.18220 0.89331 1.26067 0.96253 0.94403 0.97690 1.69714 1.33361 1.01103 1.35527 0.86214 0.79289 0.80367 0.80878 1.17920 1.19527 1.19341 1.21054 0.99970 0.91631 1.04098 1.20925 0.93046 0.98157 0.95319 0.88984 0.90304 0.89020 0.85987 0.84801 0.85935 0.86281 0.85554 0.90181 0.86040 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 8.92 36.01 0.32 -1.72 16 2 C 0.40 5.83 7.22 -30.78 -0.22 5.61 16 3 O -0.48 -8.37 17.06 5.55 0.09 -8.27 16 4 C -0.21 -3.37 5.87 -104.99 -0.62 -3.99 16 5 C -0.07 -1.12 9.41 -39.51 -0.37 -1.49 16 6 C -0.12 -2.18 8.01 -39.58 -0.32 -2.50 16 7 C 0.07 1.35 5.00 -104.81 -0.52 0.83 16 8 C -0.25 -5.63 5.53 -104.06 -0.58 -6.21 16 9 C 0.14 3.02 10.70 -17.20 -0.18 2.84 16 10 N -0.58 -13.44 10.32 -13.34 -0.14 -13.58 16 11 C 0.08 1.91 11.09 -18.01 -0.20 1.71 16 12 C -0.21 -4.98 8.73 -39.11 -0.34 -5.32 16 13 C 0.15 3.56 5.59 -106.25 -0.59 2.97 16 14 C -0.44 -10.28 7.30 -37.82 -0.28 -10.55 16 15 H 0.09 2.05 6.72 -52.49 -0.35 1.70 16 16 C 0.08 1.73 5.21 -17.30 -0.09 1.64 16 17 N -0.77 -17.79 10.95 55.56 0.61 -17.18 16 18 Si 0.91 16.78 29.59 -169.99 -5.03 11.75 16 19 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 22 C -0.15 -2.66 9.48 -39.59 -0.38 -3.03 16 23 C -0.06 -0.94 9.54 -39.51 -0.38 -1.32 16 24 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 25 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 26 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.12 1.48 7.02 -52.48 -0.37 1.11 16 28 H 0.13 2.58 7.37 -52.49 -0.39 2.20 16 29 H 0.12 2.39 8.05 -52.48 -0.42 1.96 16 30 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.13 3.07 6.26 -52.48 -0.33 2.74 16 32 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 33 H 0.12 2.03 8.05 -52.49 -0.42 1.60 16 34 H 0.12 1.92 7.64 -52.48 -0.40 1.52 16 LS Contribution 298.56 15.07 4.50 4.50 Total: -1.00 -26.96 298.56 -8.21 -35.17 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.50 Total: 8.16 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -4.74 Total: -20.54 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.47 Total: -30.76 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.96 -8.21 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239632134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.280 kcal (2) G-P(sol) polarization free energy of solvation -26.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds