Wall clock time and date at job start Mon Mar 30 2020 00:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99674 * 2 1 4 4 C 1.46959 * 119.99772 * 179.97438 * 2 1 3 5 5 C 1.40073 * 120.02616 * 359.72317 * 4 2 1 6 6 C 1.36528 * 119.98180 * 180.27376 * 5 4 2 7 7 C 1.39888 * 120.01786 * 359.97438 * 6 5 4 8 8 C 1.47685 * 119.97245 * 180.02562 * 7 6 5 9 9 C 1.39386 * 120.78493 * 130.02251 * 8 7 6 10 10 N 1.31653 * 120.65768 * 179.97438 * 9 8 7 11 11 C 1.32216 * 122.51037 * 359.97438 * 10 9 8 12 12 C 1.36510 * 121.52359 * 0.02985 * 11 10 9 13 13 C 1.41121 * 119.10824 * 359.69158 * 12 11 10 14 14 C 1.40895 * 121.11071 * 180.27176 * 13 12 11 15 15 H 1.07998 * 119.99598 * 154.79849 * 14 13 12 16 16 C 1.40265 * 120.00421 * 334.79903 * 14 13 12 17 17 N 1.30625 * 119.99789 * 344.20948 * 16 14 13 18 18 Si 1.86799 * 120.00038 * 164.20682 * 16 14 13 19 19 H 1.48504 * 109.47207 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46914 * 120.00282 * 18 16 14 21 21 H 1.48500 * 109.46977 * 240.00163 * 18 16 14 22 22 C 1.39878 * 120.04655 * 0.04403 * 7 6 5 23 23 C 1.36521 * 120.02349 * 359.95147 * 22 7 6 24 24 H 1.09003 * 109.47478 * 240.00056 * 1 2 3 25 25 H 1.08997 * 109.47389 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47318 * 120.00134 * 1 2 3 27 27 H 1.08006 * 120.01030 * 0.25476 * 5 4 2 28 28 H 1.07995 * 119.99325 * 180.02562 * 6 5 4 29 29 H 1.08004 * 119.67316 * 359.97438 * 9 8 7 30 30 H 1.08000 * 119.23618 * 180.02562 * 11 10 9 31 31 H 1.08004 * 120.44446 * 179.97438 * 12 11 10 32 32 H 0.97000 * 120.00089 * 179.97438 * 17 16 14 33 33 H 1.07998 * 119.98594 * 179.97438 * 22 7 6 34 34 H 1.08006 * 120.00549 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2418 -1.2727 0.0006 5 6 1.5419 -2.4861 0.0070 6 6 2.2254 -3.6679 0.0131 7 6 3.6243 -3.6673 0.0125 8 6 4.3627 -4.9463 0.0186 9 6 5.3859 -5.1838 -0.8976 10 7 6.0428 -6.3247 -0.8896 11 6 5.7760 -7.2922 -0.0289 12 6 4.7934 -7.1617 0.9097 13 6 4.0512 -5.9627 0.9644 14 6 3.0316 -5.7806 1.9196 15 1 2.7562 -4.7842 2.2320 16 6 2.3742 -6.8933 2.4646 17 7 2.4742 -8.0596 1.8849 18 14 1.3559 -6.7074 4.0196 19 1 1.4036 -5.2953 4.4766 20 1 -0.0511 -7.0901 3.7385 21 1 1.9063 -7.5892 5.0801 22 6 4.3242 -2.4562 0.0065 23 6 3.6425 -1.2734 0.0003 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 0.4619 -2.4867 0.0073 28 1 1.6861 -4.6035 0.0177 29 1 5.6424 -4.4243 -1.6214 30 1 6.3487 -8.2070 -0.0695 31 1 4.5899 -7.9635 1.6041 32 1 2.0199 -8.8292 2.2620 33 1 5.4042 -2.4569 0.0065 34 1 4.1832 -0.3384 -0.0048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239632134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:46 Heat of formation + Delta-G solvation = -12.815153 kcal Electronic energy + Delta-G solvation = -18976.612459 eV Core-core repulsion = 16030.828897 eV Total energy + Delta-G solvation = -2945.783561 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03876 -40.23331 -38.83012 -36.10622 -33.96713 -32.58433 -31.87220 -31.15263 -29.48357 -27.88878 -25.08009 -23.76418 -22.84476 -22.34758 -20.67930 -19.53262 -18.00514 -17.49001 -16.79221 -16.59279 -16.24821 -16.05173 -15.88527 -15.22961 -14.92979 -14.60232 -14.44078 -14.34628 -14.09989 -13.51437 -13.32271 -13.16979 -13.00345 -12.92635 -12.86398 -12.66743 -12.00474 -11.93598 -11.65694 -11.29966 -10.72104 -10.27508 -9.99189 -9.86872 -9.76542 -9.13610 -8.73362 -6.56754 -0.35437 0.61294 0.78941 0.95639 1.39189 1.51662 1.53640 1.60351 2.15020 2.71969 2.97067 3.23302 3.66086 3.92067 3.99532 4.09611 4.17331 4.28291 4.46644 4.54590 4.56698 4.72367 4.74410 4.93240 4.96390 4.99957 5.13876 5.19233 5.25161 5.35537 5.46161 5.49096 5.57704 5.77862 5.92244 6.07298 6.14826 6.47546 6.60492 6.73572 6.76558 7.67850 8.16308 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.006736 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.934075 B = 4155.872031 C = 5602.273398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.401 3.599 3 O -0.510 6.510 4 C -0.210 4.210 5 C -0.056 4.056 6 C -0.129 4.129 7 C 0.040 3.960 8 C -0.253 4.253 9 C 0.125 3.875 10 N -0.592 5.592 11 C 0.078 3.922 12 C -0.229 4.229 13 C 0.119 3.881 14 C -0.454 4.454 15 H 0.086 0.914 16 C 0.044 3.956 17 N -0.801 5.801 18 Si 0.977 3.023 19 H -0.257 1.257 20 H -0.259 1.259 21 H -0.266 1.266 22 C -0.149 4.149 23 C -0.064 4.064 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.163 0.837 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.117 0.883 32 H 0.296 0.704 33 H 0.126 0.874 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 7.019 0.393 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.283 3.717 3 O -0.390 6.390 4 C -0.211 4.211 5 C -0.074 4.074 6 C -0.147 4.147 7 C 0.039 3.961 8 C -0.258 4.258 9 C -0.033 4.033 10 N -0.307 5.307 11 C -0.070 4.070 12 C -0.251 4.251 13 C 0.111 3.889 14 C -0.483 4.483 15 H 0.104 0.896 16 C -0.176 4.176 17 N -0.426 5.426 18 Si 0.797 3.203 19 H -0.180 1.180 20 H -0.184 1.184 21 H -0.190 1.190 22 C -0.167 4.167 23 C -0.082 4.082 24 H 0.131 0.869 25 H 0.106 0.894 26 H 0.134 0.866 27 H 0.181 0.819 28 H 0.137 0.863 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.220 7.112 -0.214 9.451 hybrid contribution -0.598 -0.504 1.177 1.413 sum -6.817 6.609 0.963 9.543 Atomic orbital electron populations 1.22273 0.90431 1.05836 1.06493 1.22950 0.93426 0.86461 0.68844 1.90494 1.73460 1.35402 1.39665 1.20638 0.94382 0.95359 1.10698 1.21327 1.01270 0.90024 0.94765 1.21128 0.93525 0.98816 1.01218 1.19033 0.93461 0.91736 0.91862 1.19846 1.05267 0.97708 1.02972 1.22519 0.90820 0.94043 0.95911 1.67385 1.31988 1.02983 1.28301 1.22079 0.95809 0.96972 0.92109 1.21932 0.99180 1.00801 1.03186 1.18108 0.90652 0.90250 0.89849 1.19804 1.14950 0.94739 1.18839 0.89592 1.26821 0.96960 0.93718 1.00067 1.69747 1.34105 1.01915 1.36806 0.85211 0.78077 0.80072 0.76928 1.18002 1.18384 1.19048 1.21069 1.00294 0.91390 1.03923 1.21100 0.93938 0.97947 0.95220 0.86906 0.89414 0.86635 0.81909 0.86270 0.83757 0.84162 0.86522 0.89314 0.85620 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 8.92 71.24 0.64 -2.44 16 2 C 0.40 10.48 7.22 27.97 0.20 10.68 16 3 O -0.51 -16.80 17.06 -3.05 -0.05 -16.85 16 4 C -0.21 -6.15 5.87 -20.10 -0.12 -6.26 16 5 C -0.06 -1.57 9.41 22.32 0.21 -1.36 16 6 C -0.13 -4.62 8.01 22.27 0.18 -4.44 16 7 C 0.04 1.59 5.00 -19.98 -0.10 1.49 16 8 C -0.25 -11.59 5.53 -19.50 -0.11 -11.70 16 9 C 0.12 5.59 10.70 85.00 0.91 6.50 16 10 N -0.59 -27.96 10.32 -196.12 -2.02 -29.98 16 11 C 0.08 3.64 11.09 84.23 0.93 4.57 16 12 C -0.23 -11.38 8.73 22.57 0.20 -11.19 16 13 C 0.12 5.94 5.59 -20.92 -0.12 5.82 16 14 C -0.45 -21.65 7.30 23.41 0.17 -21.47 16 15 H 0.09 4.02 6.72 -2.91 -0.02 4.01 16 16 C 0.04 1.95 5.21 85.37 0.44 2.39 16 17 N -0.80 -37.33 10.95 21.88 0.24 -37.09 16 18 Si 0.98 33.79 29.59 68.60 2.03 35.82 16 19 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 20 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 21 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 22 C -0.15 -5.24 9.48 22.27 0.21 -5.03 16 23 C -0.06 -2.06 9.54 22.31 0.21 -1.84 16 24 H 0.11 1.40 8.07 -2.39 -0.02 1.38 16 25 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 26 H 0.12 1.35 8.08 -2.39 -0.02 1.33 16 27 H 0.16 3.18 7.02 -2.91 -0.02 3.16 16 28 H 0.12 4.61 7.37 -2.91 -0.02 4.59 16 29 H 0.15 5.63 8.05 -2.91 -0.02 5.61 16 30 H 0.14 5.74 8.06 -2.91 -0.02 5.72 16 31 H 0.12 5.91 6.26 -2.91 -0.02 5.89 16 32 H 0.30 12.30 8.29 -92.71 -0.77 11.53 16 33 H 0.13 4.20 8.05 -2.91 -0.02 4.17 16 34 H 0.13 3.95 7.64 -2.91 -0.02 3.92 16 Total: -1.00 -59.15 298.56 5.18 -53.98 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 1.12 Total: 28.40 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 3.86 Total: -34.28 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.78 Total: -67.07 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.05 Total: -16.85 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Total: -59.15 5.18 -53.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239632134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.160 kcal (2) G-P(sol) polarization free energy of solvation -59.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds