Wall clock time and date at job start Mon Mar 30 2020 00:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21255 * 120.00006 * 2 1 4 4 C 1.47188 * 120.00076 * 179.97438 * 2 1 3 5 5 C 1.39942 * 120.11198 * 0.02562 * 4 2 1 6 6 C 1.37952 * 120.07652 * 180.02562 * 5 4 2 7 7 C 1.38194 * 120.31209 * 359.97438 * 6 5 4 8 8 C 1.39499 * 120.21930 * 0.02562 * 7 6 5 9 9 C 1.48326 * 120.04178 * 179.97438 * 8 7 6 10 10 C 1.39900 * 119.60842 * 10.59442 * 9 8 7 11 11 C 1.38690 * 119.46873 * 179.97438 * 10 9 8 12 12 C 1.38295 * 118.68563 * 359.74992 * 11 10 9 13 13 C 1.40689 * 119.18602 * 0.49781 * 12 11 10 14 14 C 1.41377 * 119.76749 * 179.77117 * 13 12 11 15 15 H 1.08004 * 119.99653 * 5.71678 * 14 13 12 16 16 C 1.40016 * 119.99854 * 185.72129 * 14 13 12 17 17 N 1.30738 * 120.00221 * 8.97293 * 16 14 13 18 18 Si 1.86803 * 119.99693 * 188.69805 * 16 14 13 19 19 H 1.48499 * 109.47248 * 266.07384 * 18 16 14 20 20 H 1.48499 * 109.47387 * 26.07754 * 18 16 14 21 21 H 1.48500 * 109.46990 * 146.07250 * 18 16 14 22 22 N 1.32215 * 119.60749 * 190.57066 * 9 8 7 23 23 C 1.39085 * 119.92164 * 0.24485 * 8 7 6 24 24 H 1.09006 * 109.47226 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47081 * 300.00294 * 1 2 3 26 26 H 1.08999 * 109.47141 * 60.00798 * 1 2 3 27 27 H 1.07996 * 119.95741 * 0.02562 * 5 4 2 28 28 H 1.08006 * 119.84647 * 179.97438 * 6 5 4 29 29 H 1.07993 * 119.88947 * 179.97438 * 7 6 5 30 30 H 1.08003 * 120.26196 * 0.02562 * 10 9 8 31 31 H 1.07990 * 120.65790 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.40853 * 180.24194 * 12 11 10 33 33 H 0.97006 * 120.00275 * 179.72596 * 17 16 14 34 34 H 1.07994 * 120.15584 * 179.74613 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5456 -2.4880 0.0006 6 6 2.2361 -3.6822 0.0016 7 6 3.6181 -3.6889 0.0022 8 6 4.3260 -2.4869 0.0022 9 6 5.8092 -2.4986 0.0033 10 6 6.4911 -3.6997 -0.2192 11 6 7.8779 -3.7073 -0.2180 12 6 8.5481 -2.5173 -0.0004 13 6 7.8061 -1.3429 0.2226 14 6 8.4786 -0.1205 0.4512 15 1 9.5539 -0.0711 0.3631 16 6 7.7506 1.0259 0.7919 17 7 6.4766 0.9326 1.0704 18 14 8.6014 2.6877 0.8561 19 1 9.0479 2.9619 2.2456 20 1 9.7786 2.6765 -0.0490 21 1 7.6539 3.7459 0.4227 22 7 6.4711 -1.3737 0.2142 23 6 3.6393 -1.2773 0.0068 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.4657 -2.4893 -0.0003 28 1 1.6942 -4.6165 0.0021 29 1 4.1517 -4.6278 0.0034 30 1 5.9418 -4.6136 -0.3914 31 1 8.4238 -4.6234 -0.3882 32 1 9.6277 -2.4905 0.0024 33 1 5.9731 1.7262 1.3104 34 1 4.1836 -0.3446 0.0110 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239632761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:39 Heat of formation + Delta-G solvation = 17.265479 kcal Electronic energy + Delta-G solvation = -19005.141955 eV Core-core repulsion = 16060.662788 eV Total energy + Delta-G solvation = -2944.479167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65796 -38.44598 -37.33936 -33.74890 -32.27287 -31.17415 -30.34166 -29.73918 -28.40932 -25.65241 -23.63679 -22.73794 -21.20925 -20.71292 -19.01746 -17.48207 -16.79257 -15.52066 -15.30073 -15.18605 -14.74741 -14.62745 -14.30547 -13.90846 -13.39167 -13.30802 -12.86651 -12.77414 -12.33058 -12.13874 -11.90945 -11.73585 -11.26591 -11.20590 -11.06171 -10.79067 -10.74122 -10.40013 -9.97525 -9.44343 -9.43407 -8.91642 -8.56653 -8.13244 -7.65378 -7.31233 -6.49608 -4.53723 0.99611 1.62744 2.56090 2.84673 3.08888 3.10784 3.14429 3.21847 3.95067 4.25421 4.29504 4.78338 4.98724 5.10870 5.17439 5.43857 5.45250 5.49324 5.71698 5.87408 5.88374 5.93631 6.08659 6.24476 6.33358 6.41431 6.66122 6.69790 6.76380 6.78044 7.09484 7.14315 7.27596 7.40243 7.53105 7.67072 7.83021 7.97406 8.18939 8.62950 8.86760 9.98661 10.27847 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.007219 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.513244 B = 3877.764767 C = 5649.266792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.391 3.609 3 O -0.453 6.453 4 C -0.188 4.188 5 C -0.087 4.087 6 C -0.144 4.144 7 C -0.080 4.080 8 C -0.028 4.028 9 C 0.173 3.827 10 C -0.304 4.304 11 C -0.058 4.058 12 C -0.272 4.272 13 C 0.258 3.742 14 C -0.431 4.431 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.713 5.713 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.261 1.261 21 H -0.274 1.274 22 N -0.472 5.472 23 C -0.018 4.018 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.277 0.723 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.152 -4.813 -1.251 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.269 3.731 3 O -0.328 6.328 4 C -0.188 4.188 5 C -0.106 4.106 6 C -0.162 4.162 7 C -0.100 4.100 8 C -0.029 4.029 9 C 0.028 3.972 10 C -0.327 4.327 11 C -0.082 4.082 12 C -0.295 4.295 13 C 0.133 3.867 14 C -0.462 4.462 15 H 0.103 0.897 16 C -0.154 4.154 17 N -0.334 5.334 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.185 1.185 21 H -0.199 1.199 22 N -0.184 5.184 23 C -0.037 4.037 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.418 -3.308 -1.024 10.979 hybrid contribution 0.817 -0.329 -0.067 0.883 sum -9.601 -3.637 -1.091 10.325 Atomic orbital electron populations 1.22225 0.94497 1.04439 1.04479 1.22469 0.91242 0.88015 0.71360 1.90575 1.71971 1.34262 1.36014 1.20491 0.94772 0.94464 1.09115 1.21378 0.99328 0.91738 0.98128 1.20901 0.94064 0.97672 1.03612 1.21526 0.93890 0.98026 0.96517 1.18871 0.92514 0.92459 0.99068 1.19633 0.91134 0.90576 0.95850 1.21141 0.94448 0.97543 1.19569 1.20776 0.93905 0.96597 0.96903 1.21788 0.98866 0.94055 1.14841 1.18481 0.87512 0.92101 0.88587 1.19598 0.94709 0.92124 1.39765 0.89697 1.26029 0.94760 1.01037 0.93608 1.69981 1.07299 1.30758 1.25362 0.86341 0.80176 0.81157 0.79354 1.19502 1.18477 1.19902 1.68629 1.08694 1.24276 1.16802 1.21981 0.92007 1.00252 0.89446 0.89958 0.89161 0.89197 0.85647 0.85911 0.85472 0.88454 0.88426 0.88201 0.91125 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 10.19 36.00 0.37 -1.71 16 2 C 0.39 6.34 7.23 -30.68 -0.22 6.12 16 3 O -0.45 -9.28 17.09 5.58 0.10 -9.18 16 4 C -0.19 -3.22 5.87 -105.10 -0.62 -3.84 16 5 C -0.09 -1.18 9.44 -39.05 -0.37 -1.55 16 6 C -0.14 -1.97 10.01 -39.70 -0.40 -2.37 16 7 C -0.08 -1.35 9.39 -39.13 -0.37 -1.71 16 8 C -0.03 -0.60 5.86 -104.96 -0.61 -1.21 16 9 C 0.17 4.23 6.71 -82.93 -0.56 3.67 16 10 C -0.30 -6.77 9.45 -38.79 -0.37 -7.14 16 11 C -0.06 -1.29 10.15 -39.39 -0.40 -1.69 16 12 C -0.27 -6.69 9.83 -38.64 -0.38 -7.07 16 13 C 0.26 7.09 6.52 -85.01 -0.55 6.53 16 14 C -0.43 -11.56 9.13 -37.72 -0.34 -11.90 16 15 H 0.08 2.12 7.86 -52.48 -0.41 1.71 16 16 C 0.07 1.85 5.46 -17.35 -0.09 1.75 16 17 N -0.71 -19.22 11.58 55.55 0.64 -18.58 16 18 Si 0.91 18.99 29.57 -169.99 -5.03 13.96 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 N -0.47 -12.96 7.07 -7.67 -0.05 -13.02 16 23 C -0.02 -0.39 9.11 -38.74 -0.35 -0.74 16 24 H 0.08 0.66 5.60 -51.93 -0.29 0.37 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.13 1.20 5.91 -52.49 -0.31 0.89 16 28 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.13 1.91 6.28 -52.49 -0.33 1.58 16 30 H 0.10 1.86 6.30 -52.48 -0.33 1.52 16 31 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.28 6.96 8.29 -40.82 -0.34 6.63 16 34 H 0.16 3.97 7.15 -52.49 -0.38 3.59 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -31.00 298.84 -8.41 -39.41 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.30 Total: 5.77 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -5.27 Total: -22.87 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.59 Total: -31.60 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.10 Total: -9.18 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.00 -8.41 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239632761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.674 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds