Wall clock time and date at job start Mon Mar 30 2020 00:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21255 * 120.00006 * 2 1 4 4 C 1.47188 * 120.00076 * 179.97438 * 2 1 3 5 5 C 1.39942 * 120.11198 * 0.02562 * 4 2 1 6 6 C 1.37952 * 120.07652 * 180.02562 * 5 4 2 7 7 C 1.38194 * 120.31209 * 359.97438 * 6 5 4 8 8 C 1.39499 * 120.21930 * 0.02562 * 7 6 5 9 9 C 1.48326 * 120.04178 * 179.97438 * 8 7 6 10 10 C 1.39900 * 119.60842 * 10.59442 * 9 8 7 11 11 C 1.38690 * 119.46873 * 179.97438 * 10 9 8 12 12 C 1.38295 * 118.68563 * 359.74992 * 11 10 9 13 13 C 1.40689 * 119.18602 * 0.49781 * 12 11 10 14 14 C 1.41377 * 119.76749 * 179.77117 * 13 12 11 15 15 H 1.08004 * 119.99653 * 5.71678 * 14 13 12 16 16 C 1.40016 * 119.99854 * 185.72129 * 14 13 12 17 17 N 1.30738 * 120.00221 * 8.97293 * 16 14 13 18 18 Si 1.86803 * 119.99693 * 188.69805 * 16 14 13 19 19 H 1.48499 * 109.47248 * 266.07384 * 18 16 14 20 20 H 1.48499 * 109.47387 * 26.07754 * 18 16 14 21 21 H 1.48500 * 109.46990 * 146.07250 * 18 16 14 22 22 N 1.32215 * 119.60749 * 190.57066 * 9 8 7 23 23 C 1.39085 * 119.92164 * 0.24485 * 8 7 6 24 24 H 1.09006 * 109.47226 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47081 * 300.00294 * 1 2 3 26 26 H 1.08999 * 109.47141 * 60.00798 * 1 2 3 27 27 H 1.07996 * 119.95741 * 0.02562 * 5 4 2 28 28 H 1.08006 * 119.84647 * 179.97438 * 6 5 4 29 29 H 1.07993 * 119.88947 * 179.97438 * 7 6 5 30 30 H 1.08003 * 120.26196 * 0.02562 * 10 9 8 31 31 H 1.07990 * 120.65790 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.40853 * 180.24194 * 12 11 10 33 33 H 0.97006 * 120.00275 * 179.72596 * 17 16 14 34 34 H 1.07994 * 120.15584 * 179.74613 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5456 -2.4880 0.0006 6 6 2.2361 -3.6822 0.0016 7 6 3.6181 -3.6889 0.0022 8 6 4.3260 -2.4869 0.0022 9 6 5.8092 -2.4986 0.0033 10 6 6.4911 -3.6997 -0.2192 11 6 7.8779 -3.7073 -0.2180 12 6 8.5481 -2.5173 -0.0004 13 6 7.8061 -1.3429 0.2226 14 6 8.4786 -0.1205 0.4512 15 1 9.5539 -0.0711 0.3631 16 6 7.7506 1.0259 0.7919 17 7 6.4766 0.9326 1.0704 18 14 8.6014 2.6877 0.8561 19 1 9.0479 2.9619 2.2456 20 1 9.7786 2.6765 -0.0490 21 1 7.6539 3.7459 0.4227 22 7 6.4711 -1.3737 0.2142 23 6 3.6393 -1.2773 0.0068 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.4657 -2.4893 -0.0003 28 1 1.6942 -4.6165 0.0021 29 1 4.1517 -4.6278 0.0034 30 1 5.9418 -4.6136 -0.3914 31 1 8.4238 -4.6234 -0.3882 32 1 9.6277 -2.4905 0.0024 33 1 5.9731 1.7262 1.3104 34 1 4.1836 -0.3446 0.0110 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239632761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:39 Heat of formation + Delta-G solvation = -1.256001 kcal Electronic energy + Delta-G solvation = -19005.945107 eV Core-core repulsion = 16060.662788 eV Total energy + Delta-G solvation = -2945.282319 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02773 -40.11520 -38.82054 -35.62550 -33.77927 -32.69744 -32.02795 -31.07816 -29.82994 -27.51119 -24.97780 -24.32757 -22.97701 -22.18898 -20.44938 -19.27688 -18.20739 -17.11304 -16.78150 -16.63839 -16.25004 -15.99345 -15.95624 -15.54905 -14.83377 -14.71971 -14.48110 -14.31904 -13.87876 -13.44441 -13.03129 -12.99882 -12.89847 -12.77801 -12.74784 -12.55876 -12.25364 -11.99237 -11.70697 -11.27279 -10.72354 -10.53846 -9.99532 -9.87394 -9.52747 -9.02354 -8.39582 -6.54543 -0.30480 0.15046 0.98730 1.19476 1.33467 1.44757 1.49698 1.61399 2.16864 2.72624 3.03557 3.15452 3.67570 3.93254 3.99525 4.10323 4.21856 4.31925 4.37936 4.57081 4.65846 4.68079 4.71699 4.84544 4.91073 4.98635 5.11904 5.15113 5.17003 5.36380 5.43410 5.57028 5.59225 5.75824 5.84209 6.02548 6.15497 6.23277 6.61995 6.70537 6.90322 8.10942 8.37859 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.007219 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.513244 B = 3877.764767 C = 5649.266792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.386 3.614 3 O -0.515 6.515 4 C -0.203 4.203 5 C -0.058 4.058 6 C -0.128 4.128 7 C -0.075 4.075 8 C -0.069 4.069 9 C 0.148 3.852 10 C -0.298 4.298 11 C -0.055 4.055 12 C -0.296 4.296 13 C 0.223 3.777 14 C -0.471 4.471 15 H 0.091 0.909 16 C 0.025 3.975 17 N -0.754 5.754 18 Si 0.983 3.017 19 H -0.258 1.258 20 H -0.251 1.251 21 H -0.275 1.275 22 N -0.510 5.510 23 C -0.056 4.056 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.275 0.725 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.122 -7.634 -1.545 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.268 3.732 3 O -0.395 6.395 4 C -0.204 4.204 5 C -0.076 4.076 6 C -0.145 4.145 7 C -0.094 4.094 8 C -0.070 4.070 9 C 0.004 3.996 10 C -0.320 4.320 11 C -0.079 4.079 12 C -0.319 4.319 13 C 0.097 3.903 14 C -0.503 4.503 15 H 0.109 0.891 16 C -0.196 4.196 17 N -0.376 5.376 18 Si 0.803 3.197 19 H -0.183 1.183 20 H -0.174 1.174 21 H -0.200 1.200 22 N -0.223 5.223 23 C -0.075 4.075 24 H 0.137 0.863 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.200 0.800 28 H 0.196 0.804 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.398 -6.181 -1.322 14.814 hybrid contribution 1.583 0.315 -0.016 1.614 sum -11.815 -5.866 -1.337 13.259 Atomic orbital electron populations 1.22248 0.88882 1.07271 1.05817 1.23438 0.94118 0.86687 0.69005 1.90563 1.73787 1.36093 1.39018 1.20814 0.93178 0.97076 1.09316 1.21986 1.01908 0.89725 0.93940 1.21524 0.92669 0.99896 1.00421 1.21803 0.95606 0.96664 0.95291 1.18950 0.91048 0.94267 1.02694 1.20424 0.93392 0.90693 0.95078 1.21621 0.94848 0.98211 1.17339 1.21259 0.94277 0.97276 0.95125 1.21998 0.99559 0.94380 1.15942 1.19014 0.88329 0.93581 0.89374 1.19937 0.95210 0.93231 1.41877 0.89119 1.26981 0.95229 1.04826 0.92600 1.70152 1.08930 1.31456 1.27028 0.85191 0.78931 0.75688 0.79892 1.18259 1.17443 1.20012 1.68627 1.09016 1.26489 1.18214 1.21679 0.94294 0.98481 0.93072 0.86310 0.87761 0.87605 0.79991 0.80417 0.83490 0.84483 0.84145 0.87083 0.91459 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 10.19 71.24 0.73 -2.45 16 2 C 0.39 12.46 7.23 28.04 0.20 12.66 16 3 O -0.52 -22.65 17.09 -2.95 -0.05 -22.70 16 4 C -0.20 -6.86 5.87 -20.18 -0.12 -6.98 16 5 C -0.06 -1.28 9.44 22.61 0.21 -1.06 16 6 C -0.13 -2.76 10.01 22.19 0.22 -2.54 16 7 C -0.07 -2.29 9.39 22.56 0.21 -2.08 16 8 C -0.07 -2.98 5.86 -20.08 -0.12 -3.10 16 9 C 0.15 7.54 6.71 42.18 0.28 7.82 16 10 C -0.30 -13.09 9.45 22.78 0.22 -12.88 16 11 C -0.06 -2.43 10.15 22.39 0.23 -2.21 16 12 C -0.30 -15.06 9.83 22.88 0.22 -14.83 16 13 C 0.22 13.06 6.52 40.26 0.26 13.32 16 14 C -0.47 -27.11 9.13 23.47 0.21 -26.89 16 15 H 0.09 4.84 7.86 -2.91 -0.02 4.82 16 16 C 0.03 1.40 5.46 85.29 0.47 1.87 16 17 N -0.75 -44.49 11.58 21.83 0.25 -44.24 16 18 Si 0.98 41.48 29.57 68.60 2.03 43.51 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 22 N -0.51 -30.24 7.07 -178.19 -1.26 -31.50 16 23 C -0.06 -2.55 9.11 22.81 0.21 -2.34 16 24 H 0.12 1.10 5.60 -2.38 -0.01 1.09 16 25 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.18 1.98 5.91 -2.91 -0.02 1.96 16 28 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.15 3.81 6.28 -2.91 -0.02 3.79 16 30 H 0.14 4.79 6.30 -2.91 -0.02 4.77 16 31 H 0.14 4.86 8.06 -2.92 -0.02 4.83 16 32 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 33 H 0.28 15.26 8.29 -92.70 -0.77 14.49 16 34 H 0.10 5.79 7.15 -2.91 -0.02 5.77 16 Total: -1.00 -80.07 298.84 5.54 -74.52 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.13 Total: 22.10 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.44 Total: -41.69 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -1.01 Total: -75.74 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -80.07 5.54 -74.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239632761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.269 kcal (2) G-P(sol) polarization free energy of solvation -80.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds