Wall clock time and date at job start Mon Mar 30 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21289 * 119.99889 * 2 1 4 4 C 1.46985 * 120.00192 * 180.02562 * 2 1 3 5 5 C 1.40066 * 120.02122 * 180.02562 * 4 2 1 6 6 C 1.36539 * 119.97511 * 179.97438 * 5 4 2 7 7 C 1.39887 * 120.02412 * 359.97438 * 6 5 4 8 8 C 1.47666 * 119.97994 * 179.97438 * 7 6 5 9 9 C 1.39754 * 120.65764 * 309.97647 * 8 7 6 10 10 C 1.38370 * 118.46707 * 180.02562 * 9 8 7 11 11 C 1.39089 * 119.73005 * 359.97438 * 10 9 8 12 12 N 1.31264 * 121.35387 * 0.02562 * 11 10 9 13 13 C 1.33695 * 121.64659 * 359.97438 * 12 11 10 14 14 C 1.40790 * 119.94146 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99879 * 179.97438 * 14 13 12 16 16 C 1.40236 * 120.00138 * 359.97438 * 14 13 12 17 17 N 1.30642 * 119.99772 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47499 * 59.99930 * 18 16 14 20 20 H 1.48499 * 109.47293 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47078 * 299.99977 * 18 16 14 22 22 C 1.39892 * 120.04053 * 0.25032 * 7 6 5 23 23 C 1.36538 * 120.02319 * 359.49020 * 22 7 6 24 24 H 1.09005 * 109.47211 * 269.99883 * 1 2 3 25 25 H 1.09002 * 109.47277 * 29.99795 * 1 2 3 26 26 H 1.09000 * 109.47326 * 149.99507 * 1 2 3 27 27 H 1.07993 * 120.01345 * 359.97438 * 5 4 2 28 28 H 1.07994 * 119.98708 * 180.02562 * 6 5 4 29 29 H 1.07998 * 120.77274 * 0.04490 * 9 8 7 30 30 H 1.07997 * 120.13413 * 180.02562 * 10 9 8 31 31 H 1.07997 * 119.32551 * 180.27306 * 11 10 9 32 32 H 0.96997 * 119.99603 * 180.02562 * 17 16 14 33 33 H 1.07999 * 119.98629 * 179.74855 * 22 7 6 34 34 H 1.07995 * 120.01134 * 180.23242 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 6 2.2419 -1.2729 -0.0006 5 6 3.6426 -1.2734 0.0000 6 6 4.3243 -2.4564 0.0000 7 6 3.6245 -3.6676 0.0000 8 6 4.3628 -4.9464 -0.0006 9 6 5.3877 -5.1771 -0.9223 10 6 6.0492 -6.3918 -0.8827 11 6 5.6850 -7.3451 0.0624 12 7 4.7209 -7.1190 0.9240 13 6 4.0458 -5.9651 0.9345 14 6 3.0177 -5.7610 1.8746 15 1 2.4721 -4.8290 1.8841 16 6 2.7023 -6.7677 2.7984 17 7 3.3627 -7.8949 2.7871 18 14 1.3378 -6.4971 4.0451 19 1 0.0584 -6.2501 3.3330 20 1 1.2034 -7.7029 4.9015 21 1 1.6673 -5.3230 4.8925 22 6 2.2256 -3.6681 -0.0053 23 6 1.5420 -2.4862 0.0000 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 4.1831 -0.3384 0.0004 28 1 5.4043 -2.4570 0.0008 29 1 5.6574 -4.4247 -1.6486 30 1 6.8457 -6.5984 -1.5821 31 1 6.2087 -8.2892 0.0903 32 1 3.1443 -8.5913 3.4259 33 1 1.6861 -4.6037 -0.0094 34 1 0.4620 -2.4868 -0.0003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239632895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:13 Heat of formation + Delta-G solvation = 13.771117 kcal Electronic energy + Delta-G solvation = -18987.318387 eV Core-core repulsion = 16042.687693 eV Total energy + Delta-G solvation = -2944.630694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69190 -38.58393 -37.32388 -33.86490 -32.52705 -31.09786 -30.56620 -29.76482 -28.20919 -25.92010 -23.66291 -22.15685 -21.26102 -20.78056 -19.40793 -17.67314 -16.76153 -15.88570 -15.31322 -15.15983 -14.79539 -14.51766 -14.31495 -13.94758 -13.58466 -13.15300 -12.96263 -12.46721 -12.35737 -12.18561 -12.07307 -11.83064 -11.63558 -11.30619 -11.21926 -11.01405 -10.59781 -10.42138 -10.06861 -9.55566 -9.49574 -8.75582 -8.54966 -8.15455 -7.75890 -7.45640 -6.61450 -4.70646 0.98776 1.96143 2.43470 2.72659 2.97545 2.99237 3.02126 3.10764 3.79136 4.32609 4.34211 4.57019 5.12653 5.18343 5.38302 5.42820 5.56853 5.61681 5.71403 5.88312 5.91953 5.96365 6.04658 6.08726 6.37878 6.44656 6.52813 6.69174 6.78256 6.81880 6.94821 7.10480 7.17981 7.35608 7.49729 7.60162 7.75485 7.85531 8.04975 8.43208 8.71948 9.89980 10.08648 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.006741 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.245159 B = 4152.434363 C = 5602.257480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.399 3.601 3 O -0.479 6.479 4 C -0.215 4.215 5 C -0.054 4.054 6 C -0.150 4.150 7 C 0.072 3.928 8 C -0.254 4.254 9 C -0.026 4.026 10 C -0.321 4.321 11 C 0.137 3.863 12 N -0.481 5.481 13 C 0.269 3.731 14 C -0.417 4.417 15 H 0.095 0.905 16 C 0.067 3.933 17 N -0.703 5.703 18 Si 0.906 3.094 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.130 4.130 23 C -0.071 4.071 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.277 0.723 33 H 0.134 0.866 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 5.854 -2.797 7.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.280 3.720 3 O -0.358 6.358 4 C -0.216 4.216 5 C -0.073 4.073 6 C -0.169 4.169 7 C 0.071 3.929 8 C -0.259 4.259 9 C -0.050 4.050 10 C -0.344 4.344 11 C -0.032 4.032 12 N -0.192 5.192 13 C 0.146 3.854 14 C -0.446 4.446 15 H 0.113 0.887 16 C -0.160 4.160 17 N -0.323 5.323 18 Si 0.729 3.271 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.148 4.148 23 C -0.089 4.089 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.566 5.554 -2.028 7.471 hybrid contribution -0.224 0.502 -0.073 0.554 sum -4.790 6.056 -2.101 8.002 Atomic orbital electron populations 1.22227 0.94581 1.04459 1.04483 1.22421 0.91336 0.87909 0.70330 1.90490 1.72260 1.34634 1.38367 1.20248 0.94476 0.94152 1.12719 1.20926 0.93065 0.98124 0.95139 1.21034 0.99917 0.91639 1.04269 1.19065 0.92623 0.92461 0.88790 1.19368 1.04605 0.96186 1.05715 1.20916 0.92812 0.95688 0.95587 1.21249 1.07898 0.97850 1.07384 1.22658 0.93355 0.96819 0.90379 1.68770 1.07456 1.20838 1.22176 1.18505 0.90981 0.85903 0.89988 1.19863 1.13105 1.01130 1.10470 0.88713 1.26186 0.97156 0.94617 0.98075 1.70069 1.31328 1.03065 1.27807 0.86392 0.81272 0.79149 0.80298 1.18523 1.19976 1.18628 1.21177 0.94070 0.98171 1.01369 1.21061 0.99391 0.91631 0.96807 0.88756 0.89989 0.89532 0.86000 0.86166 0.88359 0.88482 0.86184 0.91132 0.84831 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 9.75 36.00 0.35 -1.72 16 2 C 0.40 5.89 7.22 -30.77 -0.22 5.67 16 3 O -0.48 -8.45 17.08 5.55 0.09 -8.36 16 4 C -0.21 -3.46 5.88 -104.98 -0.62 -4.08 16 5 C -0.05 -0.92 9.54 -39.51 -0.38 -1.30 16 6 C -0.15 -2.74 9.48 -39.58 -0.38 -3.12 16 7 C 0.07 1.44 5.03 -104.81 -0.53 0.92 16 8 C -0.25 -5.80 5.52 -104.09 -0.58 -6.37 16 9 C -0.03 -0.55 9.66 -38.97 -0.38 -0.92 16 10 C -0.32 -6.79 10.10 -39.22 -0.40 -7.19 16 11 C 0.14 3.15 11.17 -17.48 -0.20 2.95 16 12 N -0.48 -12.56 7.85 -10.90 -0.09 -12.65 16 13 C 0.27 6.87 6.56 -84.70 -0.56 6.31 16 14 C -0.42 -10.30 7.96 -37.87 -0.30 -10.60 16 15 H 0.09 2.20 5.25 -52.49 -0.28 1.92 16 16 C 0.07 1.60 5.50 -17.31 -0.10 1.50 16 17 N -0.70 -17.59 11.46 55.56 0.64 -16.96 16 18 Si 0.91 17.49 29.56 -169.99 -5.03 12.46 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 C -0.13 -2.39 7.50 -39.58 -0.30 -2.68 16 23 C -0.07 -1.10 9.30 -39.51 -0.37 -1.46 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.75 6.45 -51.93 -0.34 0.42 16 27 H 0.12 1.95 7.63 -52.49 -0.40 1.55 16 28 H 0.12 2.07 8.05 -52.49 -0.42 1.65 16 29 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 33 H 0.13 2.51 7.25 -52.49 -0.38 2.13 16 34 H 0.12 1.49 6.33 -52.49 -0.33 1.15 16 LS Contribution 297.15 15.07 4.48 4.48 Total: -1.00 -28.51 297.15 -8.22 -36.73 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.39 Total: 6.38 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -4.93 Total: -22.09 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.55 Total: -29.60 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.51 -8.22 -36.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239632895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.502 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds